Complet list of 1x5v hssp file
Complete list of 1x5v.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1X5V
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-12
HEADER TOXIN 17-MAY-05 1X5V
COMPND MOL_ID: 1; MOLECULE: PCFK1; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: PSALMOPOEUS CAMBRIDGEI; ORGANISM_COMMO
AUTHOR C.PIMENTEL,S.J.CHOI,B.CHAGOT,C.GUETTE,J.M.CAMADRO,H.DARBON
DBREF 1X5V A 1 33 UNP P0C201 TXFK1_PSACA 52 84
SEQLENGTH 34
NCHAIN 1 chain(s) in 1X5V data set
NALIGN 3
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXFK1_PSACA 1X5V 1.00 1.00 1 33 52 84 33 0 0 86 P0C201 U1-theraphotoxin-Pc1a OS=Psalmopoeus cambridgei PE=1 SV=1
2 : JZT58_CHIGU 0.65 0.71 1 33 59 92 34 1 1 94 B1P1H8 U27-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
3 : TX1_SELPU 2LL1 0.64 0.73 2 33 60 92 33 1 1 94 K7N5K9 U1-TRTX-Sp1a OS=Selenotypus plumipes PE=1 SV=2
## ALIGNMENTS 1 - 3
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 158 3 0 AA
2 2 A a - 0 0 62 4 0 CCC
3 3 A G B -a 18 0A 1 4 0 GGG
4 4 A I > - 0 0 64 4 114 IHH
5 5 A L T 3 S+ 0 0 86 4 0 LLL
6 6 A H T 3 S+ 0 0 129 4 0 HHH
7 7 A D < - 0 0 68 4 0 DDD
8 8 A N E +B 28 0B 129 4 95 NPP
9 9 A b E -B 27 0B 19 4 0 CCC
10 10 A V - 0 0 75 4 89 VPP
11 11 A Y S S+ 0 0 108 4 102 Ynn
12 12 A V > + 0 0 67 4 114 Vrr
13 13 A P G > + 0 0 56 4 0 PPP
14 14 A A G 3 S+ 0 0 102 4 51 AGG
15 15 A Q G < S- 0 0 153 4 51 QHH
16 16 A N < - 0 0 31 4 89 NRR
17 17 A P + 0 0 62 4 76 PTT
18 18 A c B S-a 3 0A 12 4 0 CCC
19 19 A a > - 0 0 32 4 0 CCC
20 20 A R T 3 S+ 0 0 214 4 114 RII
21 21 A G T 3 S+ 0 0 33 4 0 GGG
22 22 A L E < -C 31 0B 27 4 0 LLL
23 23 A Q E -C 30 0B 74 4 0 QQQ
24 24 A b E -C 29 0B 2 4 0 CCC
25 25 A R E > -C 28 0B 140 4 0 RRR
26 26 A Y T 3 S+ 0 0 144 4 0 YYY
27 27 A G E 3 S+B 9 0B 46 4 0 GGG
28 28 A K E < S-BC 8 25B 106 4 44 KSK
29 29 A c E - C 0 24B 0 4 0 CCC
30 30 A L E - C 0 23B 73 4 0 LLL
31 31 A V E - C 0 22B 55 4 0 VVV
32 32 A Q + 0 0 126 4 38 QQR
33 33 A V 0 0 111 4 0 VVV
34 34 A X 0 0 186 0 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
4 4 A 0 0 50 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 4 0 0 0.693 23 -0.15
5 5 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 4 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 0 4 0 0 0.693 23 0.04
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
10 10 A 50 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.11
11 11 A 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 0 4 0 2 0.693 23 -0.02
12 12 A 50 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 4 0 0 0.693 23 -0.15
13 13 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.49
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 50 0 0 0 4 0 0 0.693 23 0.49
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 50 0 4 0 0 0.693 23 0.11
17 17 A 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.23
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
20 20 A 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 4 0 0 0.693 23 -0.15
21 21 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
22 22 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 4 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 4 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 25 0 0 0 0 75 0 0 0 0 4 0 0 0.562 18 0.55
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
30 30 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
31 31 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 25 0 75 0 0 0 4 0 0 0.562 18 0.61
33 33 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
2 12 70 1 nDr
3 11 70 1 nDr
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