Complet list of 1x3p hssp file
Complete list of 1x3p.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1X3P
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-12
HEADER UNKNOWN FUNCTION 10-MAY-05 1X3P
COMPND MOL_ID: 1; MOLECULE: CPSRP43; CHAIN: A; FRAGMENT: CHROMO-3 DOMAIN; ENG
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; ORGANISM_COMMON:
AUTHOR P.S.T.LEENA,T.K.S.KUMAR,V.SIVARAJA,R.HENRY,C.YU
DBREF 1X3P A 1 54 UNP O22265 O22265_ARATH 323 376
SEQLENGTH 54
NCHAIN 1 chain(s) in 1X3P data set
NALIGN 54
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : SR43C_ARATH 3DEO 1.00 1.00 1 54 320 373 54 0 0 373 O22265 Signal recognition particle 43 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=CAO PE=1 SV=2
2 : R0GDV2_9BRAS 0.92 0.96 1 50 320 369 50 0 0 386 R0GDV2 Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021283mg PE=4 SV=1
3 : D7LGN1_ARALL 0.87 0.94 1 54 309 362 54 0 0 366 D7LGN1 Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_904220 PE=4 SV=1
4 : V4LU51_THESL 0.75 0.88 1 51 305 354 51 1 1 364 V4LU51 Uncharacterized protein OS=Thellungiella salsuginea GN=EUTSA_v10000208mg PE=4 SV=1
5 : M4DC93_BRARP 0.68 0.88 1 50 317 365 50 1 1 380 M4DC93 Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=BRA014106 PE=4 SV=1
6 : B9H1N6_POPTR 0.58 0.80 1 50 248 296 50 1 1 311 B9H1N6 Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18750g PE=4 SV=2
7 : B9HR05_POPTR 0.58 0.80 1 50 316 364 50 1 1 380 B9HR05 Chaos family protein OS=Populus trichocarpa GN=POPTR_0009s14260g PE=4 SV=2
8 : V4SA78_9ROSI 0.57 0.82 1 51 307 356 51 1 1 389 V4SA78 Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028628mg PE=4 SV=1
9 : B9RF69_RICCO 0.56 0.80 1 50 308 356 50 1 1 396 B9RF69 Ankyrin repeat domain protein, putative OS=Ricinus communis GN=RCOM_1431980 PE=4 SV=1
10 : A5C8N4_VITVI 0.53 0.82 1 49 313 360 49 1 1 373 A5C8N4 Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027983 PE=4 SV=1
11 : F6I0T6_VITVI 0.53 0.82 1 49 313 360 49 1 1 373 F6I0T6 Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g03560 PE=4 SV=1
12 : M5VMP6_PRUPE 0.53 0.79 1 53 270 321 53 1 1 333 M5VMP6 Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008415mg PE=4 SV=1
13 : J3LJM8_ORYBR 0.51 0.73 1 48 319 367 49 1 1 419 J3LJM8 Uncharacterized protein OS=Oryza brachyantha GN=OB03G12540 PE=4 SV=1
14 : W1NL70_AMBTC 0.49 0.80 1 51 324 374 51 0 0 378 W1NL70 Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00001p00270240 PE=4 SV=1
15 : A2XC41_ORYSI 0.48 0.75 1 51 321 372 52 1 1 388 A2XC41 Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_09862 PE=4 SV=1
16 : I1P787_ORYGL 0.48 0.75 1 51 321 372 52 1 1 388 I1P787 Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1
17 : K4BBP7_SOLLC 0.48 0.72 3 52 317 365 50 1 1 368 K4BBP7 Uncharacterized protein OS=Solanum lycopersicum GN=Solyc02g087400.1 PE=4 SV=1
18 : SR43C_ORYSJ 0.48 0.73 1 51 321 372 52 1 1 388 Q8LSQ2 Probable signal recognition particle 43 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0131900 PE=2 SV=1
19 : W5E8F3_WHEAT 0.48 0.70 1 51 32 85 54 1 3 99 W5E8F3 Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
20 : W5EG98_WHEAT 0.48 0.70 1 51 15 68 54 1 3 82 W5EG98 Uncharacterized protein (Fragment) OS=Triticum aestivum PE=4 SV=1
21 : C0P9X8_MAIZE 0.46 0.70 1 51 321 376 56 1 5 382 C0P9X8 Uncharacterized protein OS=Zea mays PE=2 SV=1
22 : K4AKQ4_SETIT 0.46 0.67 1 51 320 373 54 1 3 385 K4AKQ4 Uncharacterized protein OS=Setaria italica GN=Si039479m.g PE=4 SV=1
23 : M0ZLC9_SOLTU 0.46 0.72 3 52 321 369 50 1 1 372 M0ZLC9 Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001299 PE=4 SV=1
24 : V7ADE1_PHAVU 0.44 0.76 1 54 356 408 54 1 1 424 V7ADE1 Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G025300g PE=4 SV=1
25 : C5WZV5_SORBI 0.43 0.66 1 51 374 429 56 1 5 435 C5WZV5 Putative uncharacterized protein Sb01g048210 OS=Sorghum bicolor GN=Sb01g048210 PE=4 SV=1
26 : H3FJ54_PRIPA 0.43 0.60 4 46 46 88 47 4 8 247 H3FJ54 Uncharacterized protein OS=Pristionchus pacificus GN=WBGene00111859 PE=4 SV=1
27 : U1MAI5_ASCSU 0.43 0.69 4 48 31 79 49 3 4 226 U1MAI5 Uncharacterized protein OS=Ascaris suum GN=ASU_09968 PE=4 SV=1
28 : F1L8W9_ASCSU 0.41 0.61 2 49 40 90 51 2 3 198 F1L8W9 Chromobox protein 3 OS=Ascaris suum PE=2 SV=1
29 : S8C2S1_9LAMI 0.41 0.69 1 50 252 300 51 3 3 300 S8C2S1 Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_13846 PE=4 SV=1
30 : U1MB66_ASCSU 0.41 0.61 2 49 104 154 51 2 3 332 U1MB66 Chromobox protein-like protein 1 OS=Ascaris suum GN=ASU_09939 PE=4 SV=1
31 : B6H992_PENCW 0.40 0.48 3 50 347 390 50 3 8 1488 B6H992 Pc16g04810 protein OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=Pc16g04810 PE=4 SV=1
32 : I1HA39_BRADI 0.40 0.68 1 49 327 379 53 1 4 399 I1HA39 Uncharacterized protein OS=Brachypodium distachyon GN=BRADI1G76290 PE=4 SV=1
33 : K9GD59_PEND2 0.40 0.46 3 50 347 390 50 3 8 1494 K9GD59 Uncharacterized protein OS=Penicillium digitatum (strain PHI26 / CECT 20796) GN=PDIG_41890 PE=4 SV=1
34 : K9H8W6_PEND1 0.40 0.46 3 50 347 390 50 3 8 1494 K9H8W6 Uncharacterized protein OS=Penicillium digitatum (strain Pd1 / CECT 20795) GN=PDIP_06170 PE=4 SV=1
35 : C9JWS9_HUMAN 0.38 0.60 2 50 22 71 52 3 5 110 C9JWS9 Chromobox protein homolog 1 (Fragment) OS=Homo sapiens GN=CBX1 PE=2 SV=1
36 : H2M3Z8_ORYLA 0.38 0.58 3 54 12 65 55 3 4 676 H2M3Z8 Uncharacterized protein OS=Oryzias latipes GN=LOC101161124 PE=4 SV=1
37 : H2M401_ORYLA 0.38 0.58 3 54 12 65 55 3 4 382 H2M401 Uncharacterized protein OS=Oryzias latipes GN=LOC101161124 PE=4 SV=1
38 : W2RIE9_9EURO 0.38 0.44 3 50 382 424 50 3 9 1550 W2RIE9 Uncharacterized protein OS=Cyphellophora europaea CBS 101466 GN=HMPREF1541_08533 PE=4 SV=1
39 : C1BS29_LEPSM 0.37 0.65 4 54 17 69 54 3 4 235 C1BS29 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
40 : C1BS57_LEPSM 0.37 0.65 4 54 17 69 54 3 4 203 C1BS57 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
41 : C1BSD2_LEPSM 0.37 0.65 4 54 17 69 54 3 4 201 C1BSD2 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
42 : C1BSN5_LEPSM 0.37 0.65 4 54 17 69 54 3 4 203 C1BSN5 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
43 : C1BST1_LEPSM 0.37 0.65 4 54 17 69 54 3 4 202 C1BST1 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
44 : C1BU09_LEPSM 0.37 0.65 4 54 17 69 54 3 4 203 C1BU09 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
45 : C1BUS7_LEPSM 0.37 0.65 4 54 17 69 54 3 4 202 C1BUS7 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
46 : C1BV83_LEPSM 0.37 0.65 4 54 17 69 54 3 4 199 C1BV83 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
47 : C1BVT7_LEPSM 0.37 0.65 4 54 17 69 54 3 4 201 C1BVT7 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
48 : D3PGE2_LEPSM 0.37 0.65 4 54 17 69 54 3 4 203 D3PGE2 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
49 : D3PGY0_LEPSM 0.37 0.65 4 54 17 69 54 3 4 202 D3PGY0 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
50 : D3PIA8_LEPSM 0.37 0.65 4 54 17 69 54 3 4 202 D3PIA8 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
51 : D3PID3_LEPSM 0.37 0.65 4 54 17 69 54 3 4 202 D3PID3 Chromobox protein homolog 1 OS=Lepeophtheirus salmonis GN=CBX1 PE=2 SV=1
52 : S3CIM7_OPHP1 0.37 0.57 2 51 648 701 54 3 4 701 S3CIM7 Heterochromatin protein 1 OS=Ophiostoma piceae (strain UAMH 11346) GN=F503_03047 PE=4 SV=1
53 : I3K5T8_ORENI 0.36 0.58 3 54 12 65 55 3 4 679 I3K5T8 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100690243 PE=4 SV=1
54 : W2T3Z0_NECAM 0.36 0.62 2 54 19 73 56 3 4 143 W2T3Z0 Chromo shadow domain protein OS=Necator americanus GN=NECAME_11546 PE=4 SV=1
## ALIGNMENTS 1 - 54
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 115 26 12 AAAAAAAAAAAAAAAA AGGAA AA A G
2 2 A V - 0 0 79 31 0 VVVVVVVVVVVVVVVV VVVVV VV VVV V V V V
3 3 A A S S+ 0 0 46 40 37 AAAAAAAAAAAAAAAAAAAAAAAAA VAVVAVVVAAV VAV
4 4 A E S S+ 0 0 131 55 13 EEEEEEEEEQQEEEEEEEEEEEEEEEEEEEEEEEEAAEEEEEEEEEEEEEEEAE
5 5 A S + 0 0 32 55 80 SSRRKGGGGGGGAAAACAAAAACAAKQRSRRARRKEERKKKKKKKKKKKKKSEA
6 6 A V + 0 0 7 55 16 VVVVVVVVVVVVVVVVIVVVVVIVVIIVIVVVVVVAAVVVVVVVVVVVVVVIAV
7 7 A I + 0 0 110 55 39 IIIMMMVLMMMVVVVVLVLVLVLLVQILSLIVIILIIILLLLLLLLLLLLLVII
8 8 A G + 0 0 6 55 51 GGGGGGGGGGGGDGDDENDDDDEADKDGDGGDGGDLLGDDDDDDDDDDDDDELN
9 9 A K B -A 20 0A 35 55 33 KKKKKKKKKKKKKRKKKKRRKKKKKKKEREVRVVRKKKKKKKKKKKKKKKKHKK
10 10 A R S S+ 0 0 141 55 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
11 11 A V S S- 0 0 47 55 85 VMVMMPLMVTTVQKEEEEQQQPEVQVVFEFDPDDVRRDVVVVVVVVVVVVVSRK
12 12 A G - 0 0 22 55 51 GGAGGGGGRGGGAAAAGAAAAAGAVTSNTNGAGGVVVGGGGGGGGGGGGGGNVA
13 13 A D S S+ 0 0 93 55 74 DDDDDDDDEDDDAEAADAAAAAEDAVPPPPEADDKRREKKKKKKKKKKKKKPRK
14 14 A D S S- 0 0 133 54 58 DDDDDDDDDDDEDEEENEDDTAGETDCKEKDGDD.KKDNNNNNNNNNNNNNIKD
15 15 A G S S+ 0 0 73 54 23 GGGGGGGGGGGGGKGGGGGGAEGGAGGKGKGAGG.GGGGGGGGGGGGGGGGTGG
16 16 A K + 0 0 151 55 59 KKKKNKKKKNNTEEEEKEDDTGKTTKRKKKTGTTGKKPKKKKKKKKKKKKKARK
17 17 A T + 0 0 30 55 86 TTTTTNNRNMMMGGGGGGGGAGDPAERCICTEMMKLLEVVVVVVVVVVVVVALV
18 18 A I + 0 0 100 55 56 IIIEEEEEEEEEKWKKEKDDEEEEEEIKEKEDEEVEEYEEEEEEEEEEEEEVEE
19 19 A E - 0 0 76 55 69 EEEYYYYFYYYYwEwwYwgggeYFgFHEYEYgYYEYYFYYYYYYYYYYYYYEYY
20 20 A Y B +A 9 0A 47 20 0 YYY.........yYyy.yyyyy..y.YY.Y.y..Y................Y..
21 21 A L - 0 0 39 54 6 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL.LLLLLLLLLLLLLRLL
22 22 A V - 0 0 4 55 23 VVVVVVVVVVVVVVVVVVVVVVVVVVVLVLVVVVLVVVLLLLLLLLLLLLLVVL
23 23 A K - 0 0 51 55 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKKKKKKKK
24 24 A W - 0 0 48 55 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
25 25 A T S S+ 0 0 96 55 77 TTTTTTTTTTTTVAVVTVVVVVTAVVKQVQKVKKKKKRKKKKKKKKKKKKKQKQ
26 26 A D S S+ 0 0 134 55 46 DDDDDDDDDDDDDDDDDDDDDDDDDqegDgrDrrgggsgggggggggggggggg
27 27 A M S S- 0 0 122 54 87 MMMMMIIIIIIIIIIIIITTIIILIvvd.dyIyydmmyddddddddddddgsml
28 28 A S S S+ 0 0 91 55 47 SASAADDDDDDDEDEEEEEEEEEDEgSEtEDEDDEKKDEEEEEEEEEEEEESKE
29 29 A D S S+ 0 0 105 55 45 DDDDDEEEEEEEEVEEEEEEEEEEEkEDeDSESSDHHMDDDDDDDDDDDDDDHE
30 30 A A - 0 0 38 55 65 AAAAAAAAAAAAAPAAAAAAAAAPAPSNPNCACCNSSANNNNNNNNNNNNNNSS
31 31 A T S S- 0 0 67 55 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32 32 A W - 0 0 89 55 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
33 33 A E S > S+ 0 0 0 55 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
34 34 A P T 3 S+ 0 0 0 55 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
35 35 A Q T 3 S+ 0 0 48 55 67 QQQQEEEEEEEEAQAAEAAAAAEEARPEPEEAEEEEEAKKKKKKKKRKKKKKEE
36 36 A D < + 0 0 22 55 23 DDDEEEEEEEEEEEEEEEEEEEEEEDADEDDEDDEEETEEEEEEEEEEEEEREE
37 37 A N + 0 0 45 55 21 NNNNNNNNNNNNNNNNNNNNNNNNNNnNNNLNLLNnnLNNNNNNNNNNNNNnnN
38 38 A V S S+ 0 0 121 51 32 VVVVVVVVVVVVVVVVVVVVVVVVVLvLVL.V..Lll.LLLLLLLLLLLLLklV
39 39 A D S S- 0 0 67 51 8 DDDDDDDDDDDDDDDDDDDDDDDDDDNDDD.D..DDD.DDDDDDDDDDDDDGDA
40 40 A S S S+ 0 0 66 51 78 SSSSIPLPPPPPAPAAPAAATDPPASCCPC.D..CDD.CCCCCCYCRCCCCCDC
41 41 A T S S+ 0 0 86 51 64 TTTSSDDDDDDDEEEELEEEEELDETkaHa.E..pRR.eeeeeeeeeeeeedRh
42 42 A L S > S+ 0 0 51 50 2 LLLLLLLLLLLLLLLLLLLLLLLLL.llLl.L..lLL.llllllllllllliLl
43 43 A V H > S+ 0 0 11 54 20 VVVVVIIIIIIILVLLILVVVVIVV.IIIIVVVVIIIVIIIIIIIIIIIIILII
44 44 A L H 4 S+ 0 0 72 54 81 LQLLQKKKKKKKQAQQEQQQQQEKQ.RETESQSSALLTEEEEEEEEEEEEELLA
45 45 A L H >4 S+ 0 0 95 55 70 LLLLLEEEEAAEEEEEDEEEKEDAENEEKEEEEEEGGETTTTTTTTTTTTTEGE
46 46 A Y H 3< S+ 0 0 67 55 11 YYYYYFFFFFFFFFFFFFFFFFFFFFYFFFIFIIFFFIFFFFFFFFFFFFFYFF
47 47 A Q T 3< S+ 0 0 10 54 37 QLQEEEEEEEEEEEEEEEEEEEEEE EHLHAEAALEEAEEEEEEEEEEEEEEEE
48 48 A Q S < S+ 0 0 125 54 58 QQQQQEEDDEEEQRQQKQRRQLKEL RQEQQRQQQQQQKKKKKKKKKKKKKKQR
49 49 A Q S S+ 0 0 25 52 73 QQEEEGGSGNNA HRRGRQQQRGTR RNRRRRRSKKKNNNNNNNNNNNNNQKK
50 50 A Q - 0 0 23 47 57 QQQAEQQQQ Q DQQQQQQQQQNQ Q E EEQEEERRRRRRRRRRRRRQER
51 51 A P - 0 0 94 36 73 P QQ S N PSSQSPPSSQKS RR RRRRRRRRRRRRRQRG
52 52 A M S S+ 0 0 95 24 77 M Q V K KQ EE MMMMMMMMMMMMM EK
53 53 A N 0 0 128 22 77 N Q S A RR KKKKKKKKKKKKK RV
54 54 A E 0 0 206 21 67 E Q Q EE KKKKKKKKKKKKK EE
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 12 88 0 0 0 0 0 0 0 0 0 0 0 26 0 0 0.358 11 0.88
2 2 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.000 0 1.00
3 3 A 22 0 0 0 0 0 0 0 77 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0.533 17 0.62
4 4 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 4 91 0 0 55 0 0 0.366 12 0.87
5 5 A 0 0 0 0 0 0 0 13 24 0 9 0 4 0 15 29 2 5 0 0 55 0 0 1.813 60 0.19
6 6 A 84 0 11 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.550 18 0.83
7 7 A 22 40 24 11 0 0 0 0 0 0 2 0 0 0 0 0 2 0 0 0 55 0 0 1.427 47 0.61
8 8 A 0 5 0 0 0 0 0 36 2 0 0 0 0 0 0 2 0 5 4 45 55 0 0 1.310 43 0.49
9 9 A 5 0 0 0 0 0 0 0 0 0 0 0 0 2 11 78 0 4 0 0 55 0 0 0.786 26 0.66
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 55 0 0 0.000 0 1.00
11 11 A 40 2 0 7 4 0 0 0 0 5 2 4 0 0 5 4 9 11 0 7 55 0 0 2.032 67 0.15
12 12 A 9 0 0 0 0 0 0 55 24 0 2 4 0 0 2 0 0 0 5 0 55 0 0 1.314 43 0.49
13 13 A 2 0 0 0 0 0 0 0 18 9 0 0 0 0 5 27 0 9 0 29 55 1 0 1.691 56 0.25
14 14 A 0 0 2 0 0 0 0 4 2 0 0 4 2 0 0 9 0 13 26 39 54 0 0 1.668 55 0.41
15 15 A 0 0 0 0 0 0 0 85 6 0 0 2 0 0 0 6 0 2 0 0 54 0 0 0.605 20 0.76
16 16 A 0 0 0 0 0 0 0 5 2 2 0 13 0 0 4 56 0 9 5 4 55 0 0 1.508 50 0.40
17 17 A 25 5 2 9 0 0 0 16 5 2 0 13 4 0 4 2 0 5 5 2 55 0 0 2.292 76 0.13
18 18 A 4 0 9 0 0 2 2 0 0 0 0 0 0 0 0 11 0 67 0 5 55 0 0 1.151 38 0.44
19 19 A 0 0 0 0 7 7 56 9 0 0 0 0 0 2 0 0 0 18 0 0 55 35 10 1.305 43 0.30
20 20 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
21 21 A 0 98 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 54 0 0 0.092 3 0.93
22 22 A 69 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.618 20 0.76
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 2 0 55 0 0 0.091 3 0.97
24 24 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.000 0 1.00
25 25 A 22 0 0 0 0 0 0 0 4 0 0 27 0 0 2 38 7 0 0 0 55 0 0 1.438 48 0.22
26 26 A 0 0 0 0 0 0 0 38 0 0 2 0 0 0 5 0 2 2 0 51 55 1 27 1.089 36 0.54
27 27 A 4 4 33 17 0 0 7 2 0 0 2 4 0 0 0 0 0 0 0 28 54 0 0 1.727 57 0.13
28 28 A 0 0 0 0 0 0 0 2 5 0 9 2 0 0 0 5 0 53 0 24 55 0 2 1.359 45 0.53
29 29 A 2 0 0 2 0 0 0 0 0 0 5 0 0 5 0 2 0 42 0 42 55 0 0 1.265 42 0.55
30 30 A 0 0 0 0 0 0 0 0 47 7 9 0 5 0 0 0 0 0 31 0 55 0 0 1.284 42 0.34
31 31 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 55 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 55 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 55 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 20 4 0 0 0 0 4 24 11 38 0 0 55 0 0 1.513 50 0.33
36 36 A 0 0 0 0 0 0 0 0 2 0 0 2 0 0 2 0 0 76 0 18 55 0 0 0.734 24 0.77
37 37 A 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 55 4 5 0.261 8 0.78
38 38 A 59 39 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 51 0 0 0.756 25 0.67
39 39 A 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 2 94 51 0 0 0.288 9 0.91
40 40 A 0 2 2 0 0 0 2 0 14 22 12 2 33 0 2 0 0 0 0 10 51 0 0 1.835 61 0.21
41 41 A 0 4 0 0 0 0 0 0 4 2 4 10 0 4 6 2 0 47 0 18 51 1 19 1.717 57 0.36
42 42 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0.098 3 0.97
43 43 A 33 9 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54 0 0 0.905 30 0.80
44 44 A 0 15 0 0 0 0 0 0 6 0 6 4 0 0 2 15 22 31 0 0 54 0 0 1.781 59 0.19
45 45 A 0 11 0 0 0 0 0 5 5 0 0 24 0 0 0 4 0 45 2 4 55 0 0 1.572 52 0.30
46 46 A 0 0 7 0 78 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.663 22 0.88
47 47 A 0 6 0 0 0 0 0 0 7 0 0 0 0 4 0 0 6 78 0 0 54 0 0 0.831 27 0.63
48 48 A 0 4 0 0 0 0 0 0 0 0 0 0 0 0 11 30 39 13 0 4 54 0 0 1.481 49 0.41
49 49 A 0 0 0 0 0 0 0 10 2 0 4 2 0 2 21 10 13 6 31 0 52 0 0 1.929 64 0.26
50 50 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 30 0 47 17 2 2 47 0 0 1.263 42 0.43
51 51 A 0 0 0 0 0 0 0 3 0 14 19 0 0 0 44 3 14 0 3 0 36 0 0 1.526 50 0.26
52 52 A 4 0 0 63 0 0 0 0 0 0 0 0 0 0 0 13 8 13 0 0 24 0 0 1.153 38 0.23
53 53 A 5 0 0 0 0 0 0 0 5 0 5 0 0 0 14 59 5 0 9 0 22 0 0 1.363 45 0.23
54 54 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62 10 29 0 0 21 0 0 0.879 29 0.32
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
13 20 338 1 wEy
15 20 340 1 wEy
16 20 340 1 wEy
18 20 340 1 wEy
19 20 51 3 gKWEy
20 20 34 3 gRWEy
21 20 340 5 gEDSWEy
22 20 339 3 eKWEy
25 20 393 5 gENRWEy
26 23 68 2 qQNv
26 25 72 2 gYKk
27 24 54 2 eYPv
27 35 67 1 nLv
27 39 72 1 kEl
28 26 65 2 gYGd
28 41 82 1 aAl
29 27 278 1 tAe
30 26 129 2 gYGd
30 41 146 1 aAl
31 24 370 2 rLFy
32 20 346 4 gGKWEy
33 24 370 2 rLFy
34 24 370 2 rLFy
35 24 45 2 gFSd
35 39 62 1 pDl
36 24 35 2 gWAm
36 35 48 1 nIl
37 24 35 2 gWAm
37 35 48 1 nIl
38 23 404 2 sLFy
39 23 39 2 gYGd
39 38 56 1 eDl
40 23 39 2 gYGd
40 38 56 1 eDl
41 23 39 2 gYGd
41 38 56 1 eDl
42 23 39 2 gYGd
42 38 56 1 eDl
43 23 39 2 gYGd
43 38 56 1 eDl
44 23 39 2 gYGd
44 38 56 1 eDl
45 23 39 2 gYGd
45 38 56 1 eDl
46 23 39 2 gYGd
46 38 56 1 eDl
47 23 39 2 gYGd
47 38 56 1 eDl
48 23 39 2 gYGd
48 38 56 1 eDl
49 23 39 2 gYGd
49 38 56 1 eDl
50 23 39 2 gYGd
50 38 56 1 eDl
51 23 39 2 gYGg
51 38 56 1 eDl
52 26 673 2 gYPs
52 37 686 1 nLk
52 41 691 1 dKi
53 24 35 2 gWAm
53 35 48 1 nIl
54 25 43 2 gFPl
54 40 60 1 hEl
//