Complet list of 1wwd hssp file
Complete list of 1wwd.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1WWD
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-12
HEADER VIRAL PROTEIN/RNA 05-JAN-05 1WWD
COMPND MOL_ID: 1; MOLECULE: NUCLEOPROTEIN P10; CHAIN: A; SYNONYM: NUCLEOCAPSI
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MOLONEY MURINE LEUKEMIA VIRUS; ORGANIS
AUTHOR A.DEY,D.YORK,A.SMALLS-MANTEY,M.F.SUMMERS
DBREF 1WWD A 1 56 UNP P03332 GAG_MLVMO 479 534
DBREF 1WWD B 493 498 PDB 1WWD 1WWD 493 498
SEQLENGTH 56
NCHAIN 1 chain(s) in 1WWD data set
NALIGN 143
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : GAG_MLVMS 1BM4 1.00 1.00 1 56 479 534 56 0 0 538 P03332 Gag polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag PE=1 SV=4
2 : POL_MLVMS 4MH8 1.00 1.00 1 56 479 534 56 0 0 1738 P03355 Gag-Pol polyprotein OS=Moloney murine leukemia virus (isolate Shinnick) GN=gag-pol PE=1 SV=4
3 : GAG80_MLVMN 0.98 1.00 1 56 567 622 56 0 0 626 Q8UN02 Glycosylated Gag polyprotein OS=Moloney murine leukemia virus (strain neuropathogenic variant ts1-92b) GN=gag PE=3 SV=1
4 : Q8UN00_MLVMO 0.98 1.00 1 56 479 534 56 0 0 1738 Q8UN00 Pr180 Gag-Pro-Pol polyprotein OS=Moloney murine leukemia virus GN=gag-pro-pol PE=4 SV=1
5 : Q8UN01_MLVMO 0.98 1.00 1 56 479 534 56 0 0 538 Q8UN01 Pr65 Gag polyprotein OS=Moloney murine leukemia virus GN=gag PE=4 SV=1
6 : GAG_MLVCB 0.96 1.00 1 56 477 532 56 0 0 536 P27460 Gag polyprotein OS=Cas-Br-E murine leukemia virus GN=gag PE=3 SV=3
7 : Q1KYL5_9GAMR 0.96 1.00 1 56 478 533 56 0 0 537 Q1KYL5 Gag polyprotein pr65 OS=Murine leukemia virus PE=4 SV=1
8 : Q1KYL6_9GAMR 0.96 1.00 1 56 478 533 56 0 0 1734 Q1KYL6 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
9 : Q9YKA0_9GAMR 0.96 0.98 1 56 475 530 56 0 0 534 Q9YKA0 Gag polypeptide OS=Murine leukemia virus PE=4 SV=1
10 : A7UJ19_9GAMR 0.95 1.00 1 56 477 532 56 0 0 1736 A7UJ19 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
11 : A7UJ20_9GAMR 0.95 1.00 1 56 477 532 56 0 0 1736 A7UJ20 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
12 : A7UJ21_9GAMR 0.95 1.00 1 56 477 532 56 0 0 1736 A7UJ21 Gag-pro-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
13 : E9LY60_9GAMR 0.95 1.00 1 56 477 532 56 0 0 1733 E9LY60 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
14 : E9LY61_9GAMR 0.95 1.00 1 56 477 532 56 0 0 536 E9LY61 Putative gag protein OS=XMRV PE=4 SV=1
15 : E9LY63_9GAMR 0.95 1.00 1 56 477 532 56 0 0 1733 E9LY63 Putative gag-pro-pol polyprotein OS=XMRV PE=4 SV=1
16 : E9LY64_9GAMR 0.95 1.00 1 56 477 532 56 0 0 536 E9LY64 Putative gag protein OS=XMRV PE=4 SV=1
17 : GAG_MLVAV 2Y4Z 0.95 1.00 1 56 478 533 56 0 0 537 P03336 Gag polyprotein OS=AKV murine leukemia virus GN=gag PE=1 SV=3
18 : GAG_MLVHO 0.95 1.00 1 56 481 536 56 0 0 540 P21435 Gag polyprotein OS=Hortulanus murine leukemia virus GN=gag PE=3 SV=3
19 : O41249_MLVRA 0.95 1.00 1 56 479 534 56 0 0 538 O41249 Gag polyprotein OS=Rauscher murine leukemia virus PE=4 SV=1
20 : Q1KYM1_MOUSE 0.95 1.00 1 56 478 533 56 0 0 537 Q1KYM1 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
21 : Q1KYM2_MOUSE 0.95 1.00 1 56 478 533 56 0 0 1734 Q1KYM2 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
22 : Q60588_MOUSE 0.95 1.00 1 56 478 533 56 0 0 537 Q60588 Gag protein OS=Mus musculus GN=gag PE=4 SV=2
23 : Q60FS7_9GAMR 0.95 0.98 1 56 475 530 56 0 0 534 Q60FS7 GAG polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
24 : Q6YIY0_MOUSE 0.95 1.00 1 56 477 532 56 0 0 536 Q6YIY0 Gag protein OS=Mus musculus PE=2 SV=1
25 : Q7ZJT6_9GAMR 0.95 0.98 1 56 477 532 56 0 0 1736 Q7ZJT6 Gag-pro-pol polyprotein (Precursor) OS=Amphotropic murine leukemia virus PE=4 SV=1
26 : Q7ZJT8_9GAMR 0.95 0.98 1 56 477 532 56 0 0 536 Q7ZJT8 Gag polyprotein OS=Amphotropic murine leukemia virus PE=4 SV=1
27 : Q83361_9GAMR 0.95 1.00 1 56 478 533 56 0 0 537 Q83361 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
28 : Q83362_9GAMR 0.95 1.00 1 56 478 533 56 0 0 1736 Q83362 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
29 : Q83397_9GAMR 0.95 1.00 1 56 478 533 56 0 0 537 Q83397 Putative gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
30 : Q8BFR9_MOUSE 0.95 1.00 1 56 478 533 56 0 0 537 Q8BFR9 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
31 : Q8C1W7_MOUSE 0.95 1.00 1 56 478 533 56 0 0 537 Q8C1W7 Putative uncharacterized protein OS=Mus musculus GN=Mela PE=2 SV=1
32 : Q900B1_9GAMR 0.95 1.00 1 56 478 533 56 0 0 537 Q900B1 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=1
33 : Q9E7M1_9GAMR3SM2 0.95 1.00 1 56 477 532 56 0 0 1733 Q9E7M1 Putative gag-pro-pol polyprotein OS=DG-75 Murine leukemia virus PE=1 SV=1
34 : Q9J8E2_9GAMR 0.95 1.00 1 56 478 533 56 0 0 1734 Q9J8E2 Putative gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
35 : Q9Q9A6_9GAMR 0.95 1.00 1 56 478 533 56 0 0 537 Q9Q9A6 Putative gag polyprotein OS=Murine leukemia virus PE=4 SV=1
36 : Q9WHV6_9GAMR3BP9 0.95 1.00 1 56 478 533 56 0 0 537 Q9WHV6 Gag protein OS=Murine leukemia virus PE=4 SV=1
37 : A7LM24_9GAMR 0.93 1.00 1 56 478 533 56 0 0 1618 A7LM24 Putative gag-pro-pol polyprotein (Fragment) OS=Xenotropic murine leukemia virus PE=4 SV=1
38 : D0UFA3_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1733 D0UFA3 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
39 : D0UFA4_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 D0UFA4 Gag protein OS=XMRV GN=gag PE=4 SV=1
40 : D0UFA6_9GAMR3P1G 0.93 0.98 1 56 477 532 56 0 0 1733 D0UFA6 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
41 : D5H3E2_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1733 D5H3E2 Gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus 22Rv1/CWR-R1 GN=gag-pro-pol PE=4 SV=1
42 : E7DW15_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW15 Gag protein OS=XMRV PE=4 SV=1
43 : E7DW17_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW17 Gag protein OS=XMRV PE=4 SV=1
44 : E7DW18_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW18 Gag protein OS=XMRV PE=4 SV=1
45 : E7DW21_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW21 Gag protein OS=XMRV PE=4 SV=1
46 : E7DW23_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW23 Gag protein OS=XMRV PE=4 SV=1
47 : E7DW25_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 E7DW25 Gag protein OS=XMRV PE=4 SV=1
48 : F2YZK2_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1737 F2YZK2 Putative gag-pol polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
49 : F2YZK3_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 F2YZK3 Putative gag polyprotein OS=XMRV-like mouse endogenous retrovirus mERV-XL PE=4 SV=1
50 : F6IZV5_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1737 F6IZV5 Putative gag-pro-pol polyprotein OS=PreXMRV-2 GN=gag-pro-pol PE=4 SV=1
51 : F6IZV6_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 F6IZV6 Putative gag polyprotein OS=PreXMRV-2 GN=gag PE=4 SV=1
52 : F8TLS7_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1733 F8TLS7 Putative gag-pro-pol polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag-pro-pol PE=4 SV=1
53 : F8TLS8_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 F8TLS8 Putative gag polyprotein OS=Xenotropic MuLV-related virus RKO GN=gag PE=4 SV=1
54 : F8UU41_9GAMR 0.93 0.98 1 56 477 532 56 0 0 1733 F8UU41 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
55 : F8UU42_9GAMR 0.93 0.98 1 56 477 532 56 0 0 536 F8UU42 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
56 : G4V4Z1_MOUSE 0.93 0.98 1 56 477 532 56 0 0 1737 G4V4Z1 Gag-pro-pol polyprotein OS=Mus musculus GN=gag-pro-pol PE=4 SV=1
57 : G4V4Z2_MOUSE 0.93 0.98 1 56 477 532 56 0 0 536 G4V4Z2 Gag protein OS=Mus musculus GN=gag PE=4 SV=1
58 : GAG_MLVBM 0.93 1.00 1 56 478 533 56 0 0 537 P29167 Gag polyprotein OS=Murine leukemia virus (strain BM5 eco) GN=gag PE=3 SV=3
59 : GAG_MLVDE 0.93 1.00 1 56 477 532 56 0 0 536 P29168 Gag polyprotein OS=Murine leukemia virus (strain DEF27) GN=gag PE=3 SV=3
60 : GAG_MLVDU 0.93 0.98 1 56 470 525 56 0 0 529 P23090 Gag polyprotein OS=Duplan murine leukemia virus GN=gag PE=3 SV=3
61 : GAG_XMRV3 0.93 0.98 1 56 477 532 56 0 0 536 Q2F7J2 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag PE=3 SV=1
62 : GAG_XMRV4 0.93 0.98 1 56 477 532 56 0 0 536 Q2F7I9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag PE=3 SV=1
63 : GAG_XMRV6 0.93 0.98 1 56 477 532 56 0 0 536 Q27ID9 Gag polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag PE=3 SV=1
64 : POL_XMRV3 3V1R 0.93 0.98 1 56 477 532 56 0 0 1733 Q2F7J3 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1
65 : POL_XMRV4 0.93 0.98 1 56 477 532 56 0 0 1733 Q2F7J0 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP42) GN=gag-pol PE=3 SV=1
66 : POL_XMRV6 4E89 0.93 0.98 1 56 477 532 56 0 0 1733 A1Z651 Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP62) GN=gag-pol PE=1 SV=1
67 : Q1KYL8_MOUSE 0.93 0.98 1 56 478 533 56 0 0 537 Q1KYL8 Gag polyprotein pr65 OS=Mus musculus PE=4 SV=1
68 : Q1KYL9_MOUSE 0.93 0.98 1 56 478 533 56 0 0 1734 Q1KYL9 Gag-pro-pol polyprotein OS=Mus musculus PE=4 SV=1
69 : Q4W673_9GAMR 0.93 1.00 1 56 478 533 56 0 0 537 Q4W673 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
70 : Q4W675_9GAMR 0.93 1.00 1 56 478 533 56 0 0 537 Q4W675 Gag polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
71 : Q67457_MLVFR 0.93 1.00 1 56 479 534 56 0 0 538 Q67457 Pr65 OS=Friend murine leukemia virus GN=gag PE=4 SV=2
72 : Q7SVK7_9GAMR 0.93 1.00 1 56 478 533 56 0 0 1734 Q7SVK7 Gag-pol polyprotein OS=Murine leukemia virus GN=gag-pol PE=4 SV=1
73 : Q85655_9GAMR 0.93 0.98 1 56 1 56 56 0 0 56 Q85655 Gag p10 protein (Fragment) OS=Murine leukemia virus PE=4 SV=1
74 : Q86963_9RETR 0.93 0.98 1 56 477 532 56 0 0 536 Q86963 Gag OS=Murine AIDS virus-related provirus GN=gag PE=4 SV=1
75 : T2ASM2_9GAMR 0.93 0.98 1 56 477 532 56 0 0 597 T2ASM2 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
76 : T2AUD0_9GAMR 0.93 0.98 1 56 477 532 56 0 0 597 T2AUD0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
77 : T2AUG5_9GAMR 0.93 0.98 1 56 477 532 56 0 0 597 T2AUG5 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
78 : T2AUH0_9GAMR 0.93 0.98 1 56 477 532 56 0 0 597 T2AUH0 Gag-pro-pol polyprotein (Precursor) OS=PreXMRV-1/PreXMRV-2 recombinant PE=4 SV=1
79 : E5RDS6_9GAMR 0.91 1.00 1 56 478 533 56 0 0 1734 E5RDS6 Putative gag-pro-pol polyprotein OS=Murine leukemia virus N417 GN=gag-pro-pol PE=4 SV=1
80 : E5RDS7_9GAMR 0.91 1.00 1 56 478 533 56 0 0 537 E5RDS7 Putative gag protein OS=Murine leukemia virus N417 GN=gag PE=4 SV=1
81 : F2QL73_9GAMR 0.91 0.98 1 56 468 523 56 0 0 1724 F2QL73 Gag-pro-pol polyprotein (Fragment) OS=XMRV GN=gag-pro-pol PE=4 SV=1
82 : F2QL74_9GAMR 0.91 0.98 1 56 468 523 56 0 0 527 F2QL74 Gag polyprotein (Fragment) OS=XMRV GN=gag PE=4 SV=1
83 : F8LFQ8_9GAMR 0.91 0.98 1 56 477 532 56 0 0 1733 F8LFQ8 Putative gag-pro-pol polyprotein OS=XMRV GN=gag-pro-pol PE=4 SV=1
84 : F8LFQ9_9GAMR 0.91 0.98 1 56 477 532 56 0 0 536 F8LFQ9 Putative gag polyprotein OS=XMRV GN=gag PE=4 SV=1
85 : F8UU35_9GAMR 0.91 1.00 1 56 478 533 56 0 0 1734 F8UU35 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
86 : F8UU38_9GAMR 0.91 1.00 1 56 478 533 56 0 0 1734 F8UU38 Putative gag-pro-pol polyprotein OS=Xenotropic murine leukemia virus GN=gag-pro-pol PE=4 SV=1
87 : F8UU39_9GAMR 0.91 1.00 1 56 478 533 56 0 0 537 F8UU39 Putative gag polyprotein OS=Xenotropic murine leukemia virus GN=gag PE=4 SV=1
88 : GAG_MLVFF 0.91 1.00 1 56 479 534 56 0 0 538 P26806 Gag polyprotein OS=Friend murine leukemia virus (isolate FB29) GN=gag PE=1 SV=3
89 : GAG_MLVFP 0.91 1.00 1 56 479 534 56 0 0 538 P26805 Gag polyprotein OS=Friend murine leukemia virus (isolate PVC-211) GN=gag PE=3 SV=3
90 : GAG_MLVRD 0.91 1.00 1 56 478 533 56 0 0 537 P11269 Gag polyprotein OS=Radiation murine leukemia virus GN=gag PE=1 SV=3
91 : O12373_9GAMR 0.91 1.00 1 56 479 534 56 0 0 538 O12373 Polyprotein OS=Murine leukemia virus GN=gag PE=4 SV=1
92 : P70355_MOUSE 0.91 0.96 1 56 478 533 56 0 0 1734 P70355 Gag-Pol polyprotein OS=Mus musculus GN=Mela PE=2 SV=1
93 : Q83383_9GAMR 0.91 1.00 1 56 478 533 56 0 0 537 Q83383 Gag protein OS=Murine leukemia virus GN=gag PE=4 SV=2
94 : Q85734_9GAMR 0.91 1.00 1 56 479 534 56 0 0 538 Q85734 Gag protein OS=Murine type C retrovirus GN=gag PE=4 SV=1
95 : GAG_MLVF5 0.89 1.00 1 56 480 535 56 0 0 539 P26807 Gag polyprotein OS=Friend murine leukemia virus (isolate 57) GN=gag PE=3 SV=3
96 : O39735_MLVFR 0.89 0.98 1 56 479 534 56 0 0 1738 O39735 Gag-pol polyprotein (Precursor protein) (Precursor) OS=Friend murine leukemia virus PE=4 SV=1
97 : O39736_MLVFR 0.89 0.98 1 56 479 534 56 0 0 538 O39736 Gag polyprotein (Precursor) OS=Friend murine leukemia virus GN=gag PE=4 SV=2
98 : Q83371_MLVMO 0.89 0.95 1 56 169 224 56 0 0 560 Q83371 Reverse transcriptase (Fragment) OS=Moloney murine leukemia virus GN=pol PE=4 SV=1
99 : O56222_MSVMO 0.88 0.95 1 56 479 534 56 0 0 538 O56222 Pr65 OS=Moloney murine sarcoma virus GN=gag PE=4 SV=2
100 : Q5PYI2_9GAMR 0.88 1.00 1 56 474 529 56 0 0 533 Q5PYI2 Gag polyprotein OS=Murine leukemia virus PE=4 SV=1
101 : Q5PYI3_9GAMR 0.88 1.00 1 56 474 529 56 0 0 1736 Q5PYI3 Gag-pol polyprotein OS=Murine leukemia virus PE=4 SV=1
102 : GAG_MSVMO 0.86 0.95 1 56 479 534 56 0 0 538 P03334 Gag polyprotein OS=Moloney murine sarcoma virus GN=gag PE=1 SV=3
103 : G3IAD2_CRIGR 0.66 0.88 1 56 102 157 56 0 0 163 G3IAD2 Gag polyprotein OS=Cricetulus griseus GN=I79_020552 PE=4 SV=1
104 : Q7ZL05_9GAMR 0.62 0.80 1 56 461 516 56 0 0 521 Q7ZL05 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
105 : Q7ZL07_9GAMR 0.62 0.80 1 56 461 516 56 0 0 521 Q7ZL07 Gag protein OS=Recombinant M-MuLV/RaLV retrovirus PE=4 SV=1
106 : GAG_BAEVM 0.53 0.80 1 55 478 532 55 0 0 537 P03341 Gag polyprotein OS=Baboon endogenous virus (strain M7) GN=gag PE=3 SV=4
107 : I6RYC7_9GAMR 0.49 0.67 1 45 138 182 45 0 0 194 I6RYC7 Gag (Fragment) OS=Megaderma lyra retrovirus PE=2 SV=1
108 : Q83378_9GAMR 0.48 0.76 1 54 461 514 54 0 0 517 Q83378 Gag protein OS=Rat leukemia virus GN=gag PE=4 SV=1
109 : A7KMF4_9GAMR 0.47 0.82 1 55 491 545 55 0 0 1740 A7KMF4 Gag-Pol polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
110 : A7KMF5_9GAMR 0.47 0.82 1 55 491 545 55 0 0 550 A7KMF5 Gag polyprotein (Precursor) OS=RD114 retrovirus PE=4 SV=1
111 : A7LKA6_9GAMR 0.47 0.82 1 55 491 545 55 0 0 1739 A7LKA6 Gag-pol polyprotein OS=RD114 retrovirus GN=gag PE=4 SV=1
112 : D0E0H1_ORCOR 0.47 0.68 4 56 471 523 53 0 0 527 D0E0H1 Gag protein OS=Orcinus orca GN=gag PE=4 SV=1
113 : E0D6V1_9GAMR 0.47 0.82 1 55 491 545 55 0 0 1740 E0D6V1 Gag-Pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
114 : I4DHB5_9GAMR 0.47 0.82 1 55 491 545 55 0 0 1740 I4DHB5 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
115 : I4DHB7_9GAMR 0.47 0.82 1 55 491 545 55 0 0 1740 I4DHB7 Gag-pol polyprotein OS=RD114 retrovirus GN=gag-pol PE=4 SV=1
116 : I7GZT4_FELCA 0.47 0.82 1 55 488 542 55 0 0 1737 I7GZT4 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
117 : M3WZM6_FELCA 0.46 0.75 9 54 468 515 48 1 2 522 M3WZM6 Uncharacterized protein OS=Felis catus PE=4 SV=1
118 : I7GU46_FELCA 0.45 0.76 1 55 499 553 55 0 0 1749 I7GU46 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
119 : I7GU47_FELCA 0.45 0.76 1 55 499 553 55 0 0 558 I7GU47 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
120 : I7HGJ5_FELCA 0.45 0.76 1 55 499 553 55 0 0 1748 I7HGJ5 Gag-Pol polyprotein OS=Felis catus GN=gag-pol PE=4 SV=1
121 : M3WRH5_FELCA 0.45 0.65 6 52 460 508 49 1 2 1176 M3WRH5 Uncharacterized protein OS=Felis catus PE=4 SV=1
122 : M3WYE3_FELCA 0.45 0.71 3 51 441 489 49 0 0 1326 M3WYE3 Uncharacterized protein OS=Felis catus PE=4 SV=1
123 : M3X0L9_FELCA 0.45 0.76 1 55 455 509 55 0 0 514 M3X0L9 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
124 : G3XDD7_FLV 0.44 0.76 7 56 534 580 50 1 3 1790 G3XDD7 Gag-pol polyprotein OS=Feline leukemia virus PE=4 SV=1
125 : GAG_FLV 0.44 0.76 7 56 530 576 50 1 3 580 P10262 Gag polyprotein OS=Feline leukemia virus GN=gag PE=3 SV=1
126 : I7HEG0_FLV 0.44 0.76 7 56 545 591 50 1 3 595 I7HEG0 Gag protein OS=Feline leukemia virus GN=gag PE=4 SV=1
127 : O89811_FLV 0.44 0.76 7 56 530 576 50 1 3 1786 O89811 Gag-pol polyprotein gPr80 OS=Feline leukemia virus PE=4 SV=1
128 : Q85521_FLV 0.44 0.76 7 56 530 576 50 1 3 1784 Q85521 Gag-pol polyprotein gPr80 (Precursor) OS=Feline leukemia virus PE=4 SV=1
129 : I3LMY6_PIG 0.43 0.68 4 46 449 495 47 1 4 495 I3LMY6 Uncharacterized protein OS=Sus scrofa PE=4 SV=1
130 : M3XFY4_FELCA 0.43 0.63 6 54 458 508 51 1 2 1324 M3XFY4 Uncharacterized protein OS=Felis catus PE=4 SV=1
131 : W5QCH1_SHEEP 0.43 0.69 2 43 305 346 42 0 0 353 W5QCH1 Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
132 : K0H563_FLV 0.42 0.76 7 56 530 576 50 1 3 1786 K0H563 Pr80 gag polyprotein (Fragment) OS=Feline leukemia virus PE=4 SV=1
133 : K0H6P0_FLV 0.42 0.76 7 56 530 576 50 1 3 1786 K0H6P0 Pr80 gag-pol protein (Fragment) OS=Feline leukemia virus PE=4 SV=1
134 : K0IZA4_FLV 0.42 0.76 7 56 534 580 50 1 3 584 K0IZA4 Gag polyprotein OS=Feline leukemia virus GN=gag PE=4 SV=1
135 : I3LS57_PIG 0.41 0.63 4 52 402 442 49 1 8 443 I3LS57 Uncharacterized protein (Fragment) OS=Sus scrofa PE=4 SV=1
136 : M3WYN2_FELCA 0.41 0.65 3 54 436 489 54 1 2 498 M3WYN2 Uncharacterized protein OS=Felis catus PE=4 SV=1
137 : M3WTI6_FELCA 0.40 0.65 13 56 392 439 48 1 4 443 M3WTI6 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
138 : M3X273_FELCA 0.40 0.68 3 52 455 503 50 1 1 515 M3X273 Uncharacterized protein OS=Felis catus PE=4 SV=1
139 : M3XBU2_FELCA 0.40 0.68 3 55 305 356 53 1 1 1227 M3XBU2 Uncharacterized protein (Fragment) OS=Felis catus PE=4 SV=1
140 : M3WSH5_FELCA 0.38 0.68 3 52 390 438 50 1 1 450 M3WSH5 Uncharacterized protein OS=Felis catus PE=4 SV=1
141 : M3X1L4_FELCA 0.38 0.60 6 56 437 488 52 1 1 1247 M3X1L4 Uncharacterized protein OS=Felis catus PE=4 SV=1
142 : M3XEC1_FELCA 0.38 0.68 3 52 421 469 50 1 1 1298 M3XEC1 Uncharacterized protein OS=Felis catus PE=4 SV=1
143 : M3XF72_FELCA 0.38 0.68 3 52 456 504 50 1 1 516 M3XF72 Uncharacterized protein OS=Felis catus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 163 120 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2 2 A T - 0 0 118 121 54 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA
3 3 A V + 0 0 147 128 18 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
4 4 A V + 0 0 124 131 40 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
5 5 A S - 0 0 114 131 77 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTIIIIIIIIIIIIIIIIIIIITTTIIIIIISSSS
6 6 A G + 0 0 64 134 56 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7 7 A Q + 0 0 168 142 66 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
8 8 A K - 0 0 175 142 32 KKRRRKRRKKKKRRRRRRRRRRKRKKRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
9 9 A Q + 0 0 189 143 70 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
10 10 A D + 0 0 103 143 46 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
11 11 A R - 0 0 243 143 64 RRRRRRRRRRRRRRRRRRRRRRRRGGRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
12 12 A Q + 0 0 196 143 72 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
13 13 A G S S- 0 0 72 144 68 GGGGGGGGVGGGGGGGGGGGGGVGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
14 14 A G + 0 0 67 144 53 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRRGG
15 15 A E - 0 0 107 144 71 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
16 16 A R S S- 0 0 217 144 66 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
17 17 A R S S+ 0 0 218 144 42 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
18 18 A R S > S- 0 0 138 144 33 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
19 19 A S T 3 S- 0 0 73 144 59 SSSSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
20 20 A Q T 3 S+ 0 0 135 144 66 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
21 21 A L < - 0 0 57 144 14 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
22 22 A D > - 0 0 79 144 34 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
23 23 A R T 3 S+ 0 0 207 144 24 RRRRRKRRRKKKKKKKKKRKKKHKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKKKKKK
24 24 A D T 3 S+ 0 0 82 144 1 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
25 25 A Q B < S-A 32 0A 32 144 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
26 26 A C - 0 0 0 144 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
27 27 A A S S+ 0 0 55 144 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
28 28 A Y S S+ 0 0 100 144 2 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
29 29 A C S S- 0 0 38 144 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
30 30 A K + 0 0 117 144 5 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
31 31 A E > - 0 0 117 144 1 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
32 32 A K B 3 S+A 25 0A 158 144 39 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
33 33 A G T 3 S+ 0 0 54 144 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
34 34 A H S < S- 0 0 41 144 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
35 35 A W > - 0 0 116 144 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
36 36 A A G > S+ 0 0 25 144 58 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
37 37 A K G 3 S+ 0 0 168 144 36 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
38 38 A D G < S+ 0 0 125 144 10 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
39 39 A C X - 0 0 9 144 4 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 40 A P T 3 S+ 0 0 112 144 4 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
41 41 A K T 3 S+ 0 0 149 130 12 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
42 42 A K < - 0 0 98 135 37 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
43 43 A P - 0 0 97 135 31 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
44 44 A R - 0 0 241 142 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
45 45 A G - 0 0 53 142 53 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
46 46 A P - 0 0 130 141 56 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
47 47 A R S S+ 0 0 243 140 34 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
48 48 A G - 0 0 47 140 67 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
49 49 A P + 0 0 93 141 55 PPPPPPPPPSSSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
50 50 A R + 0 0 192 141 62 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
51 51 A P S S- 0 0 132 141 49 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
52 52 A Q - 0 0 136 140 73 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
53 53 A T - 0 0 116 134 81 TTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
54 54 A S - 0 0 83 134 64 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
55 55 A L 0 0 175 130 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
56 56 A L 0 0 208 117 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A A 0 0 163 120 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA AAAA AAA A
2 2 A T - 0 0 118 121 54 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVVANVAAA AAAA AAA A T
3 3 A V + 0 0 147 128 18 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVV VVVV VVV LV P I LLL
4 4 A V + 0 0 124 131 40 VVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVQQVGQVVVIVVVV VVV AV V A VK AAA
5 5 A S - 0 0 114 131 77 STTIIIIITTIIIITTTSSTSSTTSSSISSSSTGGTNGTTTGTTTT TTT DT G G GA DDD
6 6 A G + 0 0 64 134 56 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGSSGGQQEGQEEEDEEEE EEEPDE PPP PT GDD
7 7 A Q + 0 0 168 142 66 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGGKRENNNRNNNN NNNPSNDDNDDPPPDDDPE TAA
8 8 A K - 0 0 175 142 32 RRRRRRRRRRRRRRRRRRRRRRRRRRRERRRRRKKRPKRRRNRRRR GGGPRGRRRRRRPRRRRRK RRR
9 9 A Q + 0 0 189 143 70 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRAPRTTTRTTTTETTTEGTEEEEEREKEEERM KKK
10 10 A D + 0 0 103 143 46 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNGGGPGGGGQGGGGGGGGGGGEEEEEGGSEEEGT GGG
11 11 A R - 0 0 243 143 64 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRREEKGEKKKEKKKKTKKKIKKSNSSSQTKSSSQK KKK
12 12 A Q + 0 0 196 143 72 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRSIRSSSGSSSSQSSSQGSKKKKKGQGKKKGV GEG
13 13 A G S S- 0 0 72 144 68 GGGGGGGGGGGGGGGGGGGGGGGGGGGEEGGERVVGRVGGGRGGGGTGGGTTGLLLLLTTLLLLTLGTTT
14 14 A G + 0 0 67 144 53 GGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGDGGEDGEEETEEEEAEEEITEGGGGGRTDGGGRASTTT
15 15 A E - 0 0 107 144 71 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDVVTEVTTTATTTTRTTTRKTDDDDDPRLDDDPASKKK
16 16 A R S S- 0 0 217 144 66 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRERKKKDKKKKPKKKPGKQQQQQGPRQQQGVHGGG
17 17 A R S S+ 0 0 218 144 42 RRRRRRRRRRKKKKRRRRRKRMRRRRRKRKKRRKKRRKRRRRRRRRPRRRPGRRRRRRKPKRRRKVPGGG
18 18 A R S > S- 0 0 138 144 33 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRGGGRRGRRRRRRRRRRRRRKRKKKKKMRRKKKRQGKKK
19 19 A S T 3 S- 0 0 73 144 59 PPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPSPPPPRPPPPRPPPPGPPPRQPIIIIISRNIIISKPQQQ
20 20 A Q T 3 S+ 0 0 135 144 66 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHKKKPKKKKPKKKKHKKKHRKPPPPPPHSPPPPPKRRR
21 21 A L < - 0 0 57 144 14 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLIIILIIIILVVVLLVLLLLLLLILLLLLLLLL
22 22 A D > - 0 0 79 144 34 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEDDDDDDDEEEDEEEEDGGGDQGGGGGGEDSGGGEDEQQQ
23 23 A R T 3 S+ 0 0 207 144 24 HKEKKKKKKKKKKKKKKHHKHKKKHHHKCKKCRKKKKKKKKKKKKKKKKKKKKKKKKKHKHKKKHKRKKK
24 24 A D T 3 S+ 0 0 82 144 1 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDD
25 25 A Q B < S-A 32 0A 32 144 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
26 26 A C - 0 0 0 144 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
27 27 A A S S+ 0 0 55 144 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA
28 28 A Y S S+ 0 0 100 144 2 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHYYY
29 29 A C S S- 0 0 38 144 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCYCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
30 30 A K + 0 0 117 144 5 KKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKEKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKHKKK
31 31 A E > - 0 0 117 144 1 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQEEE
32 32 A K B 3 S+A 25 0A 158 144 39 KKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKQKRRRKRRRRKRRRRKRRRKIRKKKKKKKKRKRKKEIII
33 33 A G T 3 S+ 0 0 54 144 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSGGG
34 34 A H S < S- 0 0 41 144 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
35 35 A W > - 0 0 116 144 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
36 36 A A G > S+ 0 0 25 144 58 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIAAIIIAIIIIAIIIIAIVVVVVKIKVVVKAKAAA
37 37 A K G 3 S+ 0 0 168 144 36 KKKKKKKKRRKKKKRRRRRKRKRRRRRKKRRKRRRKRRKKKRKKKKRKKKQRKRRRRRNGNRRRNRTRRR
38 38 A D G < S+ 0 0 125 144 10 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDEDDDEDDDDDDDEEEDDDEEEDDD
39 39 A C X - 0 0 9 144 4 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 40 A P T 3 S+ 0 0 112 144 4 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPPPPPPPPPpPPPpPPPPPPPppPPPPPppPPP
41 41 A K T 3 S+ 0 0 149 130 12 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKPKKKKKKKKKkKKKkKK.....kkS....kn...
42 42 A K < - 0 0 98 135 37 KKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKRKKKRPKRRRKRRRRQRRRQRR.....KQH....RSKKK
43 43 A P - 0 0 97 135 31 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPPPKPPPPKPPPPPPPPPPP.....TPP....PQRRR
44 44 A R - 0 0 241 142 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSSSRKSRRRNRRRRRGGGRAGKKKKKKR KKK.RQAAA
45 45 A G - 0 0 53 142 53 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGDGGDDDGDDDDPNNNPGNRRRRRAP RRR.HGGGG
46 46 A P - 0 0 130 141 56 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPALLQ SSSSGSSSSSSSSSSSPPPPPPS PPP.NPGGG
47 47 A R S S+ 0 0 243 140 34 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQRRK EKKKRKKKKQKKKQRKRRRRR Q RKR.QKKKK
48 48 A G - 0 0 47 140 67 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGPRRK DKKKPKKKKGKKKGGKKKKKK G KKK.KKGGG
49 49 A P + 0 0 93 141 55 PPPPPPPPPPPPPPPPPPPPPPPPPLLPPPPPPPPP PSSSTSSSSQPPPQSPKKKKK Q KKKNPPSSS
50 50 A R + 0 0 192 141 62 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRWRRA ATTTRTTTTWAAAWDAPPPPP W PPPRWRKRK
51 51 A P S S- 0 0 132 141 49 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP HPPPNPPPPQSSSQPSAAAAA Q AAAPQPTGT
52 52 A Q - 0 0 136 140 73 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQV RVVVKVVVVPVVVP VNNDNN P NNNEPQDSD
53 53 A T - 0 0 116 134 81 ATTTTTTTTTTTTTTTTAATATTTAAATTTTTRTTL PLLLILLLLKLLL LSSSSS K SSS KG D
54 54 A S - 0 0 83 134 64 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST PTTTLTTTTTAAA ATTTTT T TTT TC P
55 55 A L 0 0 175 130 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLTLLLL LLL LLLLLL LLL L L
56 56 A L 0 0 208 117 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL L LLLLL LLL L
## ALIGNMENTS 141 - 143
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A A 0 0 163 120 2
2 2 A T - 0 0 118 121 54
3 3 A V + 0 0 147 128 18 LL
4 4 A V + 0 0 124 131 40 AA
5 5 A S - 0 0 114 131 77 DD
6 6 A G + 0 0 64 134 56 PDD
7 7 A Q + 0 0 168 142 66 PTA
8 8 A K - 0 0 175 142 32 PRR
9 9 A Q + 0 0 189 143 70 EKK
10 10 A D + 0 0 103 143 46 GGG
11 11 A R - 0 0 243 143 64 TKK
12 12 A Q + 0 0 196 143 72 QGG
13 13 A G S S- 0 0 72 144 68 TTT
14 14 A G + 0 0 67 144 53 TTT
15 15 A E - 0 0 107 144 71 RKK
16 16 A R S S- 0 0 217 144 66 PGG
17 17 A R S S+ 0 0 218 144 42 PGG
18 18 A R S > S- 0 0 138 144 33 RKK
19 19 A S T 3 S- 0 0 73 144 59 RQQ
20 20 A Q T 3 S+ 0 0 135 144 66 HRR
21 21 A L < - 0 0 57 144 14 LLL
22 22 A D > - 0 0 79 144 34 DQQ
23 23 A R T 3 S+ 0 0 207 144 24 KKK
24 24 A D T 3 S+ 0 0 82 144 1 DDD
25 25 A Q B < S-A 32 0A 32 144 0 QQQ
26 26 A C - 0 0 0 144 0 CCC
27 27 A A S S+ 0 0 55 144 3 AAA
28 28 A Y S S+ 0 0 100 144 2 YYY
29 29 A C S S- 0 0 38 144 0 CCC
30 30 A K + 0 0 117 144 5 KKK
31 31 A E > - 0 0 117 144 1 EEE
32 32 A K B 3 S+A 25 0A 158 144 39 KII
33 33 A G T 3 S+ 0 0 54 144 1 GGG
34 34 A H S < S- 0 0 41 144 0 HHH
35 35 A W > - 0 0 116 144 0 WWW
36 36 A A G > S+ 0 0 25 144 58 PAA
37 37 A K G 3 S+ 0 0 168 144 36 KRR
38 38 A D G < S+ 0 0 125 144 10 KDD
39 39 A C X - 0 0 9 144 4 KCC
40 40 A P T 3 S+ 0 0 112 144 4 qPP
41 41 A K T 3 S+ 0 0 149 130 12 r..
42 42 A K < - 0 0 98 135 37 PKK
43 43 A P - 0 0 97 135 31 SWR
44 44 A R - 0 0 241 142 56 QAA
45 45 A G - 0 0 53 142 53 GGG
46 46 A P - 0 0 130 141 56 QWR
47 47 A R S S+ 0 0 243 140 34 WKK
48 48 A G - 0 0 47 140 67 QGG
49 49 A P + 0 0 93 141 55 PSS
50 50 A R + 0 0 192 141 62 KKK
51 51 A P S S- 0 0 132 141 49 ITT
52 52 A Q - 0 0 136 140 73 ADD
53 53 A T - 0 0 116 134 81 P
54 54 A S - 0 0 83 134 64 I
55 55 A L 0 0 175 130 4 L
56 56 A L 0 0 208 117 1 F
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 1 99 0 0 0 0 0 0 0 0 0 0 0 120 0 0 0.048 1 0.97
2 2 A 2 0 0 0 0 0 0 0 12 0 0 85 0 0 0 0 0 0 1 0 121 0 0 0.518 17 0.45
3 3 A 93 5 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 128 0 0 0.303 10 0.82
4 4 A 89 0 2 0 0 0 0 1 5 0 0 0 0 0 0 1 2 0 0 0 131 0 0 0.482 16 0.59
5 5 A 0 0 27 0 0 0 0 5 1 0 40 21 0 0 0 0 0 0 1 5 131 0 0 1.419 47 0.22
6 6 A 0 0 0 0 0 0 0 78 0 4 1 1 0 0 0 0 2 9 0 4 134 0 0 0.875 29 0.44
7 7 A 0 0 0 0 0 0 0 1 2 4 1 1 0 0 1 1 73 1 8 5 142 0 0 1.110 37 0.33
8 8 A 0 0 0 0 0 0 0 3 0 3 0 0 0 0 82 11 0 1 1 0 142 0 0 0.668 22 0.67
9 9 A 0 0 0 1 0 0 0 1 1 1 0 8 0 0 4 4 73 8 0 0 143 0 0 1.042 34 0.30
10 10 A 0 0 0 0 0 0 0 19 0 1 1 1 0 0 0 0 1 6 1 72 143 0 0 0.886 29 0.54
11 11 A 0 0 1 0 0 0 0 2 0 0 5 2 0 0 71 14 1 3 1 0 143 0 0 1.055 35 0.36
12 12 A 1 0 1 0 0 0 0 6 0 0 8 0 0 0 2 6 76 1 0 0 143 0 0 0.940 31 0.27
13 13 A 3 7 0 0 0 0 0 77 0 0 0 8 0 0 2 0 0 2 0 0 144 0 0 0.871 29 0.32
14 14 A 0 0 1 0 0 0 0 77 1 0 1 6 0 0 3 0 0 8 0 2 144 0 0 0.907 30 0.47
15 15 A 2 1 0 0 0 0 0 0 1 1 1 8 0 0 3 4 0 72 0 6 144 0 0 1.116 37 0.29
16 16 A 1 0 0 0 0 0 0 6 0 3 0 0 0 1 76 8 6 1 0 1 144 0 0 0.966 32 0.34
17 17 A 1 0 0 1 0 0 0 4 0 3 0 0 0 0 81 10 0 0 0 0 144 0 0 0.713 23 0.58
18 18 A 0 0 0 1 0 0 0 3 0 0 0 0 0 0 85 10 1 0 0 0 144 0 0 0.547 18 0.66
19 19 A 0 0 6 0 0 0 0 1 0 78 7 0 0 0 3 1 4 0 1 0 144 0 0 0.894 29 0.41
20 20 A 0 0 0 0 0 0 0 0 0 9 1 0 0 3 4 11 72 0 0 0 144 0 0 0.985 32 0.33
21 21 A 3 91 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144 0 0 0.363 12 0.85
22 22 A 0 0 0 0 0 0 0 8 0 0 1 0 0 0 0 0 4 8 0 78 144 0 0 0.771 25 0.66
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 1 8 8 81 0 1 0 0 144 0 0 0.691 23 0.75
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 99 144 0 0 0.041 1 0.98
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 144 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 144 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 98 0 0 2 0 0 0 0 0 0 0 0 144 0 0 0.101 3 0.96
28 28 A 0 0 0 0 0 0 99 0 0 0 0 0 0 1 0 0 0 0 0 0 144 0 0 0.041 1 0.98
29 29 A 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 0 0 0 144 0 0 0.041 1 0.99
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 98 0 1 0 0 144 0 0 0.115 3 0.95
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 99 0 0 144 0 0 0.041 1 0.98
32 32 A 0 0 4 0 0 0 0 0 0 0 0 0 0 0 12 82 1 1 0 0 144 0 0 0.642 21 0.60
33 33 A 0 0 0 0 0 0 0 99 0 0 1 0 0 0 0 0 0 0 0 0 144 0 0 0.041 1 0.98
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 144 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 144 0 0 0.000 0 1.00
36 36 A 6 0 10 0 0 0 0 0 81 1 0 0 0 0 0 3 0 0 0 0 144 0 0 0.690 23 0.41
37 37 A 0 0 0 0 0 0 0 1 0 0 0 1 0 0 26 70 1 0 2 0 144 0 0 0.782 26 0.64
38 38 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 6 0 93 144 0 0 0.275 9 0.90
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 1 0 0 0 0 144 0 0 0.041 1 0.96
40 40 A 0 0 0 0 0 0 0 0 0 99 0 1 0 0 0 0 1 0 0 0 144 14 7 0.083 2 0.95
41 41 A 0 0 0 0 0 0 0 0 0 1 1 0 0 0 2 96 0 0 1 0 130 0 0 0.214 7 0.87
42 42 A 0 0 0 0 0 0 0 0 0 1 1 0 0 1 12 83 2 0 0 0 135 0 0 0.627 20 0.62
43 43 A 0 0 0 0 0 1 0 0 0 92 1 1 0 0 3 1 1 0 0 0 135 0 0 0.416 13 0.68
44 44 A 0 0 0 0 0 0 0 3 4 0 3 0 0 0 81 7 1 0 1 0 142 0 0 0.787 26 0.44
45 45 A 0 0 0 0 0 0 0 82 1 2 0 0 0 1 6 0 0 0 3 6 142 0 0 0.754 25 0.46
46 46 A 0 1 0 0 0 1 0 3 1 80 11 0 0 0 1 0 1 0 1 0 141 0 0 0.787 26 0.44
47 47 A 0 0 0 0 0 1 0 0 0 0 0 0 0 0 81 14 4 1 0 0 140 0 0 0.628 20 0.65
48 48 A 0 0 0 0 0 0 0 80 0 1 0 0 0 0 1 16 1 0 0 1 140 0 0 0.661 22 0.33
49 49 A 0 1 0 0 0 0 0 0 0 78 11 1 0 0 0 6 2 0 1 0 141 0 0 0.816 27 0.44
50 50 A 0 0 0 0 0 4 0 0 4 6 0 5 0 0 77 4 0 0 0 1 141 0 0 0.917 30 0.38
51 51 A 0 0 1 0 0 0 0 1 6 83 3 3 0 1 0 0 3 0 1 0 141 0 0 0.761 25 0.50
52 52 A 9 0 0 0 0 0 0 0 1 3 1 0 0 0 1 1 76 1 5 4 140 0 0 0.993 33 0.26
53 53 A 0 9 1 0 0 0 0 1 6 1 6 72 0 0 1 2 0 0 0 1 134 0 0 1.081 36 0.18
54 54 A 0 1 1 0 0 0 0 0 3 1 79 14 1 0 0 0 0 0 0 0 134 0 0 0.740 24 0.36
55 55 A 0 99 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 130 0 0 0.045 1 0.96
56 56 A 0 99 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 117 0 0 0.049 1 0.99
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
117 33 500 2 pKKk
121 36 495 2 pKKk
129 38 486 4 pNCPEk
130 36 493 2 pKKk
136 39 474 2 pKKk
137 29 420 4 pLWLGn
141 36 472 1 qRr
//