Complet list of 1wkt hssp file
Complete list of 1wkt.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1WKT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-12
HEADER TOXIN 08-MAY-96 1WKT
COMPND MOL_ID: 1; MOLECULE: YEAST KILLER TOXIN; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: WILLIOPSIS SATURNUS VAR. MRAKII; ORGAN
AUTHOR W.ANTUCH,P.GUNTERT,K.WUTHRICH
DBREF 1WKT A 1 88 UNP P10410 TOXK_WILMR 1 88
SEQLENGTH 87
NCHAIN 1 chain(s) in 1WKT data set
NALIGN 2
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TOXK_CYBMR 1WKT 1.00 1.00 1 87 38 124 87 0 0 125 P10410 Killer toxin HM-1 OS=Cyberlindnera mrakii GN=HMK PE=1 SV=2
2 : TOXK_CYBSA 0.86 0.95 2 87 39 123 86 1 1 124 Q00948 Killer toxin OS=Cyberlindnera saturnus GN=HSK PE=3 SV=1
## ALIGNMENTS 1 - 2
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 95 2 0 G
2 2 A D - 0 0 148 3 0 DD
3 3 A G + 0 0 41 3 0 GG
4 4 A Y - 0 0 44 3 0 YY
5 5 A L E +A 39 0A 10 3 0 LL
6 6 A I E -A 38 0A 4 3 26 IV
7 7 A M E -AB 37 19A 15 3 0 MM
8 8 A a E -A 36 0A 1 3 0 CC
9 9 A K S S+ 0 0 77 3 0 KK
10 10 A N S S- 0 0 38 3 0 NN
11 11 A b S S+ 0 0 62 3 0 CC
12 12 A D >> - 0 0 61 3 0 DD
13 13 A P T 34 S+ 0 0 56 3 0 PP
14 14 A N T 34 S+ 0 0 143 3 0 NN
15 15 A T T <4 S+ 0 0 108 3 79 TS
16 16 A G S < S- 0 0 13 3 0 GG
17 17 A S - 0 0 87 3 0 SS
18 18 A a - 0 0 13 3 0 CC
19 19 A D B -B 7 0A 50 3 0 DD
20 20 A W + 0 0 163 3 0 WW
21 21 A K S S- 0 0 160 3 0 KK
22 22 A Q + 0 0 150 3 0 QQ
23 23 A N > + 0 0 4 3 0 NN
24 24 A W T 3 S- 0 0 106 3 0 WW
25 25 A N T 3 S+ 0 0 106 3 0 NN
26 26 A T S < S- 0 0 51 3 0 TT
27 27 A c + 0 0 61 3 0 CC
28 28 A V E -D 84 0B 26 3 0 VV
29 29 A G E +D 83 0B 45 3 0 GG
30 30 A I + 0 0 31 3 0 II
31 31 A G + 0 0 24 3 0 GG
32 32 A A S S- 0 0 75 3 73 AS
33 33 A N S S+ 0 0 127 3 0 NN
34 34 A V + 0 0 25 3 0 VV
35 35 A H + 0 0 70 3 0 HH
36 36 A W E -AC 8 74A 60 3 0 WW
37 37 A M E -AC 7 73A 9 3 0 MM
38 38 A V E -AC 6 72A 12 3 0 VV
39 39 A T E -AC 5 71A 3 3 0 TT
40 40 A G - 0 0 1 2 0 G.
41 41 A G > + 0 0 20 3 0 GG
42 42 A S T 3 S+ 0 0 51 3 86 SE
43 43 A T T > S- 0 0 79 3 79 TS
44 44 A D T < S+ 0 0 127 3 53 DN
45 45 A G T 3 S+ 0 0 61 3 0 GG
46 46 A K S < S- 0 0 143 3 73 KQ
47 47 A Q - 0 0 112 3 0 QQ
48 48 A G E +E 67 0B 4 3 0 GG
49 49 A d E -E 66 0B 14 3 0 CC
50 50 A A E -EF 65 86B 0 3 0 AA
51 51 A T E -EF 64 85B 22 3 86 TI
52 52 A I E -EF 63 84B 12 3 0 II
53 53 A W E -EF 62 83B 51 3 0 WW
54 54 A E S S+ 0 0 73 3 0 EE
55 55 A G S > S- 0 0 11 3 0 GG
56 56 A S T 3 S+ 0 0 69 3 0 SS
57 57 A G T 3 S- 0 0 37 3 0 GG
58 58 A c S < S+ 0 0 36 3 0 CC
59 59 A V + 0 0 91 3 86 VT
60 60 A G S S- 0 0 57 3 0 GG
61 61 A R - 0 0 166 3 0 RR
62 62 A S E -E 53 0B 49 3 0 SS
63 63 A T E -E 52 0B 29 3 0 TT
64 64 A T E -E 51 0B 92 3 0 TT
65 65 A M E -E 50 0B 82 3 0 MM
66 66 A d E +E 49 0B 71 3 0 CC
67 67 A e E -E 48 0B 21 3 0 CC
68 68 A P - 0 0 76 3 0 PP
69 69 A A S S+ 0 0 15 3 53 AG
70 70 A N S S+ 0 0 89 3 53 ND
71 71 A T E -C 39 0A 46 3 0 TT
72 72 A b E -C 38 0A 40 3 0 CC
73 73 A e E -C 37 0A 18 3 0 CC
74 74 A N E -C 36 0A 65 3 0 NN
75 75 A I + 0 0 15 3 0 II
76 76 A N + 0 0 123 3 0 NN
77 77 A T - 0 0 41 3 0 TT
78 78 A G S S+ 0 0 74 3 0 GG
79 79 A F S S- 0 0 36 3 0 FF
80 80 A Y - 0 0 121 3 0 YY
81 81 A I + 0 0 25 3 0 II
82 82 A R + 0 0 109 3 0 RR
83 83 A S E +DF 29 53B 0 3 0 SS
84 84 A Y E -DF 28 52B 4 3 0 YY
85 85 A R E - F 0 51B 90 3 0 RR
86 86 A R E F 0 50B 66 3 0 RR
87 87 A V 0 0 64 3 0 VV
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
5 5 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
6 6 A 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.73
7 7 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.20
16 16 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 3 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 3 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 3 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
28 28 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
30 30 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 67 0 33 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.27
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
34 34 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 3 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
37 37 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
38 38 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 1 0 0.000 0 1.00
40 40 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 33 0 0 3 0 0 0.637 21 0.13
43 43 A 0 0 0 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.20
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 67 3 0 0 0.637 21 0.47
45 45 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 33 0 0 0 3 0 0 0.637 21 0.27
47 47 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 3 0 0 0.000 0 1.00
48 48 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
49 49 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
51 51 A 0 0 33 0 0 0 0 0 0 0 0 67 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.13
52 52 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
53 53 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
54 54 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 3 0 0 0.000 0 1.00
55 55 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
56 56 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
57 57 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
59 59 A 67 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.13
60 60 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
61 61 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
62 62 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
63 63 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
64 64 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
65 65 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
66 66 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
67 67 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
68 68 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
69 69 A 0 0 0 0 0 0 0 33 67 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.637 21 0.47
70 70 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 33 3 0 0 0.637 21 0.47
71 71 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
72 72 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
73 73 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
74 74 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
75 75 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
76 76 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
77 77 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
78 78 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
79 79 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
80 80 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
81 81 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
82 82 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
83 83 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
84 84 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
85 85 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
86 86 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
87 87 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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