Complet list of 1vtx hssp file
Complete list of 1vtx.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1VTX
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-11
HEADER NEUROTOXIN 13-MAR-97 1VTX
COMPND MOL_ID: 1; MOLECULE: DELTA-ATRACOTOXIN-HV1; CHAIN: A; SYNONYM: VERSUTO
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HADRONYCHE VERSUTA; ORGANISM_TAXID: 69
AUTHOR J.I.FLETCHER,B.E.CHAPMAN,G.F.KING
DBREF 1VTX A 1 42 UNP P13494 TXDT1_HADVE 1 42
SEQLENGTH 42
NCHAIN 1 chain(s) in 1VTX data set
NALIGN 7
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXDT1_HADVE 1VTX 1.00 1.00 1 42 1 42 42 0 0 42 P13494 Delta-hexatoxin-Hv1a OS=Hadronyche versuta PE=1 SV=1
2 : TXDT1_HADSP 0.86 0.95 1 42 1 42 42 0 0 42 P0C1R3 Delta-hexatoxin-Hsp201a OS=Hadronyche sp. (strain 20) PE=1 SV=1
3 : TXDT1_ATRRO 1QDP 0.83 0.95 1 42 1 42 42 0 0 42 P01478 Delta-hexatoxin-Ar1a OS=Atrax robustus PE=1 SV=1
4 : TDM1A_MISBR 0.79 0.98 1 42 1 42 42 0 0 42 P83608 Delta-actinopoditoxin-Mb1a OS=Missulena bradleyi PE=1 SV=1
5 : TXM14_MACGS 0.69 0.86 1 42 27 68 42 0 0 70 Q75WG5 Delta-hexatoxin-Mg1b OS=Macrothele gigas PE=1 SV=1
6 : TDT1B_HADVE 0.67 0.90 1 42 1 42 42 0 0 42 P81885 Delta-hexatoxin-Hv1b OS=Hadronyche versuta PE=1 SV=1
7 : TXMG4_MACGS 2ROO 0.50 0.62 1 40 63 102 40 0 0 105 P83560 Delta-hexatoxin-Mg1a OS=Macrothele gigas PE=1 SV=2
## ALIGNMENTS 1 - 7
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 98 8 0 CCCCCCC
2 2 A A - 0 0 5 8 40 AAAAASG
3 3 A K > - 0 0 147 8 53 KKKKRRS
4 4 A K T 3 S+ 0 0 92 8 28 KKKKKSK
5 5 A R T 3 S+ 0 0 188 8 32 RRRRRDR
6 6 A N < - 0 0 62 8 66 NNNEAGA
7 7 A W B -A 30 0A 170 8 0 WWWWWWW
8 8 A b + 0 0 28 8 0 CCCCCCC
9 9 A G + 0 0 56 8 64 GGGAEGK
10 10 A K S S- 0 0 171 8 32 KKKKKKE
11 11 A T S S+ 0 0 140 8 57 TNNTTTK
12 12 A E - 0 0 106 8 32 EEEEEEK
13 13 A D - 0 0 125 8 15 DDDDNDD
14 14 A c - 0 0 4 8 0 CCCCCCC
15 15 A a S > S- 0 0 50 8 0 CCCCCCC
16 16 A d T 3 S+ 0 0 51 8 0 CCCCCCC
17 17 A P T 3 S+ 0 0 37 8 32 PPPPPPG
18 18 A M E < +B 33 0A 24 8 42 MMMMMMY
19 19 A K E -B 32 0A 109 8 29 KKKKKKN
20 20 A b E -B 31 0A 50 8 0 CCCCCCC
21 21 A V E -B 30 0A 48 8 14 VIIIIIV
22 22 A Y - 0 0 128 8 45 YYYYYKY
23 23 A A - 0 0 43 8 0 AAAAAAA
24 24 A W S S+ 0 0 184 8 0 WWWWWWW
25 25 A Y S S+ 0 0 163 8 0 YYYYYYY
26 26 A N > + 0 0 38 8 23 NNNNNKN
27 27 A E T 3 + 0 0 150 8 43 EQQEGQQ
28 28 A Q T 3 S- 0 0 96 8 23 QQQQQNQ
29 29 A G < - 0 0 3 8 37 GGGSSGS
30 30 A S E -AB 7 21A 19 8 26 SSSSSNS
31 31 A c E + B 0 20A 1 8 0 CCCCCCC
32 32 A Q E - B 0 19A 93 8 32 QQQQDQE
33 33 A S E - B 0 18A 73 8 86 SSTTHNR
34 34 A T > - 0 0 32 8 34 TTTTTTK
35 35 A I G > S+ 0 0 129 8 56 IIIFIIW
36 36 A S G > S+ 0 0 45 8 57 STTSSSK
37 37 A A G X S+ 0 0 1 8 82 AGGGTAY
38 38 A L G X S+ 0 0 88 8 27 LLLMIIL
39 39 A W G < S+ 0 0 198 8 8 WFFFWWF
40 40 A K G < S- 0 0 131 8 49 KKKKTKT
41 41 A K < 0 0 143 7 57 KKKKSN
42 42 A d 0 0 100 7 0 CCCCCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 13 75 0 13 0 0 0 0 0 0 0 0 0 8 0 0 0.736 24 0.60
3 3 A 0 0 0 0 0 0 0 0 0 0 13 0 0 0 25 63 0 0 0 0 8 0 0 0.900 30 0.46
4 4 A 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 88 0 0 0 0 8 0 0 0.377 12 0.72
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 13 8 0 0 0.377 12 0.67
6 6 A 0 0 0 0 0 0 0 13 25 0 0 0 0 0 0 0 0 13 50 0 8 0 0 1.213 40 0.34
7 7 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 63 13 0 0 0 0 0 0 13 0 13 0 0 8 0 0 1.074 35 0.36
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 0 13 0 0 8 0 0 0.377 12 0.68
11 11 A 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0 13 0 0 25 0 8 0 0 0.900 30 0.42
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 88 0 0 8 0 0 0.377 12 0.68
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 88 8 0 0 0.377 12 0.85
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 13 0 88 0 0 0 0 0 0 0 0 0 0 8 0 0 0.377 12 0.68
18 18 A 0 0 0 88 0 0 13 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.377 12 0.57
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 0 0 13 0 8 0 0 0.377 12 0.70
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
21 21 A 38 0 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.662 22 0.85
22 22 A 0 0 0 0 0 0 88 0 0 0 0 0 0 0 0 13 0 0 0 0 8 0 0 0.377 12 0.54
23 23 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 88 0 8 0 0 0.377 12 0.76
27 27 A 0 0 0 0 0 0 0 13 0 0 0 0 0 0 0 0 50 38 0 0 8 0 0 0.974 32 0.56
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 0 13 0 8 0 0 0.377 12 0.76
29 29 A 0 0 0 0 0 0 0 63 0 0 38 0 0 0 0 0 0 0 0 0 8 0 0 0.662 22 0.63
30 30 A 0 0 0 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 13 0 8 0 0 0.377 12 0.74
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 8 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75 13 0 13 8 0 0 0.736 24 0.68
33 33 A 0 0 0 0 0 0 0 0 0 0 38 25 0 13 13 0 0 0 13 0 8 0 0 1.494 49 0.13
34 34 A 0 0 0 0 0 0 0 0 0 0 0 88 0 0 0 13 0 0 0 0 8 0 0 0.377 12 0.65
35 35 A 0 0 75 0 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.736 24 0.44
36 36 A 0 0 0 0 0 0 0 0 0 0 63 25 0 0 0 13 0 0 0 0 8 0 0 0.900 30 0.43
37 37 A 0 0 0 0 0 0 13 38 38 0 0 13 0 0 0 0 0 0 0 0 8 0 0 1.255 41 0.17
38 38 A 0 63 25 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.900 30 0.73
39 39 A 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0.693 23 0.92
40 40 A 0 0 0 0 0 0 0 0 0 0 0 25 0 0 0 75 0 0 0 0 8 0 0 0.562 18 0.50
41 41 A 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 71 0 0 14 0 7 0 0 0.796 26 0.42
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 7 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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