Complet list of 1v91 hssp file
Complete list of 1v91.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1V91
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-11
HEADER TOXIN 19-JAN-04 1V91
COMPND MOL_ID: 1; MOLECULE: DELTA-PALUTOXIN IT2; CHAIN: A; SYNONYM: DELTA-PAL
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: PARACOELOTES LUCTUOSUS; ORGANISM_TAXID
AUTHOR G.FERRAT,F.BOSMANS,J.TYTGAT,C.PIMENTEL,B.CHAGOT,T.NAKAJIMA, H.DARBON,G
DBREF 1V91 A 1 37 UNP P83257 TXDP2_PARLU 1 37
SEQLENGTH 37
NCHAIN 1 chain(s) in 1V91 data set
NALIGN 26
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXDP2_PIRLC 1V91 1.00 1.00 1 37 1 37 37 0 0 37 P83257 Delta-amaurobitoxin-Pl1b OS=Pireneitega luctuosa PE=1 SV=1
2 : TXC2_HOLCU 0.86 0.94 2 37 3 38 36 0 0 38 P60177 Mu-agatoxin-Hc1b OS=Hololena curta PE=1 SV=1
3 : TXMG3_AGEAP 0.86 0.94 2 37 3 38 36 0 0 38 P60178 Mu-agatoxin-Aa1c OS=Agelenopsis aperta PE=1 SV=1
4 : TAG3B_AGEOR 0.84 0.92 1 37 36 72 37 0 0 74 Q5Y4V7 U3-agatoxin-Ao1b OS=Agelena orientalis PE=2 SV=1
5 : TAG3D_AGEOR 0.84 0.92 1 37 36 72 37 0 0 74 Q5Y4V5 U3-agatoxin-Ao1d OS=Agelena orientalis PE=2 SV=1
6 : TXC3_HOLCU 0.83 0.92 2 37 3 38 36 0 0 38 P15968 Mu-agatoxin-Hc1c OS=Hololena curta PE=1 SV=1
7 : TXDP1_PIRLC 1V90 0.78 0.95 1 37 1 37 37 0 0 37 P83256 Delta-amaurobitoxin-Pl1a OS=Pireneitega luctuosa PE=1 SV=1
8 : TXDP4_PIRLC 0.73 0.78 1 37 1 37 37 0 0 37 P83259 Delta-amaurobitoxin-Pl1d OS=Pireneitega luctuosa PE=1 SV=1
9 : TXMG4_AGEAP 0.68 0.81 1 37 1 37 37 0 0 37 P11060 Mu-agatoxin-Aa1d OS=Agelenopsis aperta PE=1 SV=1
10 : TXMG5_AGEAP 0.65 0.81 1 37 1 37 37 0 0 37 P11061 Mu-agatoxin-Aa1e OS=Agelenopsis aperta PE=1 SV=1
11 : TAG3F_AGEOR 0.62 0.78 1 37 36 72 37 0 0 74 Q5Y4V3 Beta/delta-agatoxin-1 OS=Agelena orientalis PE=1 SV=1
12 : TAG3G_AGEOR 0.62 0.81 1 37 36 72 37 0 0 74 Q5Y4V2 Beta/delta-agatoxin-2 OS=Agelena orientalis PE=1 SV=1
13 : TXMG6_AGEAP 0.62 0.78 1 37 1 37 37 0 0 37 P11062 Mu-agatoxin-Aa1f OS=Agelenopsis aperta PE=1 SV=1
14 : TAG3A_AGEOR 0.59 0.70 1 37 34 70 37 0 0 71 Q5Y4V8 Beta/delta-agatoxin-7 OS=Agelena orientalis PE=1 SV=1
15 : TAG3C_AGEOR 0.59 0.78 1 37 35 71 37 0 0 73 Q5Y4V6 Beta/delta-agatoxin-3 OS=Agelena orientalis PE=1 SV=1
16 : TAG3H_AGEOR 0.59 0.78 1 37 36 72 37 0 0 74 Q5Y4V1 U3-agatoxin-Ao1h OS=Agelena orientalis PE=2 SV=1
17 : TAG3I_AGEOR 0.59 0.81 1 37 35 71 37 0 0 73 Q5Y4V0 U3-agatoxin-Ao1i OS=Agelena orientalis PE=2 SV=1
18 : TAG3L_AGEOR 0.59 0.68 1 37 34 69 37 1 1 70 Q5Y4U7 Beta/delta-agatoxin-5 OS=Agelena orientalis PE=1 SV=1
19 : TXMG2_AGEAP 0.59 0.68 1 37 1 37 37 0 0 37 P11058 Mu-agatoxin-Aa1b OS=Agelenopsis aperta PE=1 SV=1
20 : TAG3E_AGEOR 0.57 0.76 1 37 35 71 37 0 0 73 Q5Y4V4 U3-agatoxin-Ao1e OS=Agelena orientalis PE=2 SV=1
21 : TAG3J_AGEOR 0.57 0.76 1 37 35 71 37 0 0 73 Q5Y4U9 U3-agatoxin-Ao1j OS=Agelena orientalis PE=2 SV=1
22 : TAG3K_AGEOR 0.57 0.76 1 37 35 71 37 0 0 73 Q5Y4U8 Beta/delta-agatoxin-4 OS=Agelena orientalis PE=1 SV=1
23 : TAG3M_AGEOR 0.57 0.65 1 37 34 69 37 1 1 70 Q5Y4U6 Beta/delta-agatoxin-6 OS=Agelena orientalis PE=1 SV=1
24 : TXC1_HOLCU 0.54 0.68 1 37 1 36 37 1 1 36 P15967 Mu-agatoxin-Hc1a OS=Hololena curta PE=1 SV=1
25 : TXMG1_AGEAP 1EIT 0.49 0.65 1 37 1 36 37 1 1 36 P11057 Mu-agatoxin-Aa1a OS=Agelenopsis aperta PE=1 SV=1
26 : TXDP3_PIRLC 0.46 0.69 1 35 2 36 35 0 0 36 P83258 Delta-amaurobitoxin-Pl1c OS=Pireneitega luctuosa PE=1 SV=1
## ALIGNMENTS 1 - 26
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 162 24 51 A ED GAAADGDEGDGDEGGGESED
2 2 A a - 0 0 71 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A V B -a 17 0A 15 27 30 VVVVVVLAVVVVVAVVVVAVVVVVVL
4 4 A G - 0 0 34 27 31 GGGGGGGTGGGGGAGGGGTGGGGGPN
5 5 A D S S+ 0 0 83 27 32 DDDDDDEKEEEEEKEEEEKEEEEEEE
6 6 A G S S+ 0 0 35 27 58 GGGGGGGNNNSSSNNSNNNNNNNYNG
7 7 A Q E -B 33 0B 107 27 50 QQQQQQEQQKQQQKQQQGKQQQGGGD
8 8 A R E -B 32 0B 114 27 55 RRRRRKKRQQQQQRQQQRRQQQHRHW
9 9 A b - 0 0 1 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A A S > S- 0 0 41 26 33 AAAAAAAAAAAAAAAAARAAAAR.RA
11 11 A S T 4 S- 0 0 77 27 35 SDDDDDDSDDDDDDDDNDDDDDSRDD
12 12 A W T 4 S- 0 0 177 27 8 WWWWWWWWWWWWWWWWWWWWWWWSWW
13 13 A S T 4 S+ 0 0 85 27 61 SAAAAFSAAASSAAASAYAAAAYAYS
14 14 A G < + 0 0 46 27 37 GGGGGGGGGGGGGGGGGNGGRGNYDG
15 15 A P S S- 0 0 62 25 27 PPPPPPPPPPPPPPPPP.PPPL.EEP
16 16 A Y - 0 0 198 26 80 YYYYYYSYHHYYHWHYHDWHHHDD.S
17 17 A c B -a 3 0A 24 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A a - 0 0 28 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
19 19 A D S S+ 0 0 175 27 59 DSSSSSDDDDKKDESKSDDSSSDDEG
20 20 A G S S+ 0 0 28 27 7 GGGGGGGGGGGGGGGGGGGGGGGGGE
21 21 A Y - 0 0 73 27 24 YYYYYYFFYYYYYLYYYFLYYYYYFM
22 22 A Y E -C 34 0B 146 27 3 YYYYYYYYYYYYYYYYYYYYYYYYYW
23 23 A b E -C 33 0B 49 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
24 24 A S E -C 32 0B 66 27 51 SSSSSSSSTTTTTSTTTSSTTTSNSS
25 25 A d + 0 0 71 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A R - 0 0 192 27 30 RRRRRRRRRRRRRRRQRRRRRRMSRP
27 27 A S S S+ 0 0 122 27 99 SSSSSSSSYYYYYSYYYQSYYYQQQG
28 28 A M S S- 0 0 133 27 74 MMMMMMMYFFFFFYFFFPYFFFPPPF
29 29 A P S S+ 0 0 93 27 9 PPPPPPPPPPPPPPPPPPPPPPPPPG
30 30 A Y S S- 0 0 113 27 96 YYYYYYYGKKKKKGKKKYGKKKNYKK
31 31 A d - 0 0 8 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
32 32 A R E -BC 8 24B 71 27 72 RRRRRRRMIIIIIMIIIIMIIIILIR
33 33 A c E +BC 7 23B 0 27 0 CCCCCCCCCCCCCCCCCCCCCCCCCC
34 34 A R E - C 0 22B 138 27 42 RRRRRRRRRRVVVRRVRRRVRRRRRK
35 35 A N - 0 0 64 27 61 NSSSSSNPNNNNNPKNKNPNKKNNNK
36 36 A N 0 0 77 26 36 NDDDDDNNNNDDNNDDDNSDDDNNN
37 37 A S 0 0 151 26 47 SSSSSSSSNNNNNSSNSNSNSSNNN
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 29 21 0 4 0 0 0 0 0 0 21 0 25 24 0 0 1.492 49 0.48
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
3 3 A 81 7 0 0 0 0 0 0 11 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0.604 20 0.70
4 4 A 0 0 0 0 0 0 0 81 4 4 0 7 0 0 0 0 0 0 4 0 27 0 0 0.726 24 0.69
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 63 0 26 27 0 0 0.885 29 0.67
6 6 A 0 0 0 0 0 0 4 33 0 0 15 0 0 0 0 0 0 0 48 0 27 0 0 1.123 37 0.42
7 7 A 0 0 0 0 0 0 0 15 0 0 0 0 0 0 0 11 67 4 0 4 27 0 0 1.041 34 0.50
8 8 A 0 0 0 0 0 4 0 0 0 0 0 0 0 7 41 7 41 0 0 0 27 0 0 1.239 41 0.45
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 1 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 88 0 0 0 0 0 12 0 0 0 0 0 26 0 0 0.358 11 0.67
11 11 A 0 0 0 0 0 0 0 0 0 0 15 0 0 0 4 0 0 0 4 78 27 0 0 0.722 24 0.64
12 12 A 0 0 0 0 0 96 0 0 0 0 4 0 0 0 0 0 0 0 0 0 27 0 0 0.158 5 0.92
13 13 A 0 0 0 0 4 0 11 0 59 0 26 0 0 0 0 0 0 0 0 0 27 0 0 1.026 34 0.38
14 14 A 0 0 0 0 0 0 4 81 0 0 0 0 0 0 4 0 0 0 7 4 27 2 0 0.726 24 0.62
15 15 A 0 4 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 8 0 0 25 1 0 0.443 14 0.72
16 16 A 0 0 0 0 0 8 42 0 0 0 8 0 0 31 0 0 0 0 0 12 26 0 0 1.370 45 0.20
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 4 0 0 37 0 0 0 0 11 0 7 0 41 27 0 0 1.293 43 0.41
20 20 A 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 0 4 0 0 27 0 0 0.158 5 0.92
21 21 A 0 7 0 4 15 0 74 0 0 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0.820 27 0.76
22 22 A 0 0 0 0 0 4 96 0 0 0 0 0 0 0 0 0 0 0 0 0 27 0 0 0.158 5 0.97
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 56 41 0 0 0 0 0 0 4 0 27 0 0 0.814 27 0.48
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
26 26 A 0 0 0 4 0 0 0 0 0 4 4 0 0 0 85 0 4 0 0 0 27 0 0 0.625 20 0.70
27 27 A 0 0 0 0 0 0 41 4 0 0 41 0 0 0 0 0 15 0 0 0 27 0 0 1.137 37 0.01
28 28 A 0 0 0 30 44 0 11 0 0 15 0 0 0 0 0 0 0 0 0 0 27 0 0 1.248 41 0.25
29 29 A 0 0 0 0 0 0 0 4 0 96 0 0 0 0 0 0 0 0 0 0 27 0 0 0.158 5 0.91
30 30 A 0 0 0 0 0 0 37 11 0 0 0 0 0 0 0 48 0 0 4 0 27 0 0 1.086 36 0.04
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
32 32 A 0 4 52 11 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 0 27 0 0 1.073 35 0.27
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 27 0 0 0.000 0 1.00
34 34 A 19 0 0 0 0 0 0 0 0 0 0 0 0 0 78 4 0 0 0 0 27 0 0 0.630 21 0.57
35 35 A 0 0 0 0 0 0 0 0 0 11 19 0 0 0 0 19 0 0 52 0 27 0 0 1.209 40 0.38
36 36 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 46 50 26 0 0 0.829 27 0.64
37 37 A 0 0 0 0 0 0 0 0 0 0 58 0 0 0 0 0 0 0 42 0 26 0 0 0.681 22 0.53
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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