Complet list of 1v1d hssp file
Complete list of 1v1d.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1V1D
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-11
HEADER HORMONE 14-APR-04 1V1D
COMPND MOL_ID: 1; MOLECULE: PANCREATIC HORMONE; CHAIN: A; FRAGMENT: PANCREATI
SOURCE MOL_ID: 1; SYNTHETIC: YES; ORGANISM_SCIENTIFIC: BOS TAURUS; ORGANISM_C
AUTHOR A.NICOLL,R.K.ALLEMANN
DBREF 1V1D A 1 31 UNP P01302 PAHO_BOVIN 30 60
SEQLENGTH 31
NCHAIN 1 chain(s) in 1V1D data set
NALIGN 73
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : E1B9Q7_BOVIN 0.90 0.94 1 31 30 60 31 0 0 95 E1B9Q7 Pancreatic prohormone OS=Bos taurus GN=PPY PE=3 SV=1
2 : E1BPE4_BOVIN 0.90 0.94 1 31 30 60 31 0 0 131 E1BPE4 Pancreatic prohormone OS=Bos taurus GN=PPY PE=3 SV=2
3 : PAHO_BOVIN 1LJV 0.90 0.94 1 31 30 60 31 0 0 131 P01302 Pancreatic prohormone OS=Bos taurus GN=PPY PE=1 SV=2
4 : D2HCU4_AILME 0.87 0.90 1 31 30 60 31 0 0 95 D2HCU4 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_008438 PE=3 SV=1
5 : F6RLN6_CALJA 0.87 0.90 1 31 30 60 31 0 0 95 F6RLN6 Uncharacterized protein OS=Callithrix jacchus GN=PPY PE=3 SV=1
6 : F7EEN9_MACMU 0.87 0.90 1 31 30 60 31 0 0 95 F7EEN9 Pancreatic hormone OS=Macaca mulatta GN=PPY PE=3 SV=1
7 : G1MJ21_AILME 0.87 0.90 1 31 30 60 31 0 0 122 G1MJ21 Uncharacterized protein OS=Ailuropoda melanoleuca GN=PPY PE=3 SV=1
8 : G1PYE6_MYOLU 0.87 0.94 1 31 30 60 31 0 0 96 G1PYE6 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
9 : G3RAQ1_GORGO 0.87 0.90 1 31 30 60 31 0 0 95 G3RAQ1 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101127363 PE=3 SV=1
10 : G7PUY8_MACFA 0.87 0.90 1 31 30 60 31 0 0 95 G7PUY8 Pancreatic polypeptide OS=Macaca fascicularis GN=EGM_07980 PE=3 SV=1
11 : H2NTV7_PONAB 0.87 0.90 1 31 30 60 31 0 0 95 H2NTV7 Uncharacterized protein OS=Pongo abelii GN=PPY PE=3 SV=1
12 : H2QD55_PANTR 0.87 0.90 1 31 30 60 31 0 0 95 H2QD55 Uncharacterized protein OS=Pan troglodytes GN=PPY PE=3 SV=1
13 : I3M9J3_SPETR 0.87 0.90 1 31 30 60 31 0 0 95 I3M9J3 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=PPY PE=3 SV=1
14 : K7EKP2_HUMAN 0.87 0.90 1 31 30 60 31 0 0 105 K7EKP2 Pancreatic hormone OS=Homo sapiens GN=PPY PE=2 SV=1
15 : K7EML0_HUMAN 0.87 0.90 1 31 30 60 31 0 0 79 K7EML0 Pancreatic hormone OS=Homo sapiens GN=PPY PE=2 SV=1
16 : L5KRU3_PTEAL 0.87 0.90 1 31 30 60 31 0 0 656 L5KRU3 MAGUK p55 subfamily member 2 OS=Pteropus alecto GN=PAL_GLEAN10004224 PE=3 SV=1
17 : M3YDX0_MUSPF 0.87 0.90 1 31 30 60 31 0 0 95 M3YDX0 Uncharacterized protein OS=Mustela putorius furo GN=PPY PE=3 SV=1
18 : PAHO_FELCA 0.87 0.90 1 31 1 31 31 0 0 66 P06884 Pancreatic prohormone (Fragment) OS=Felis catus GN=PPY PE=1 SV=1
19 : PAHO_HUMAN 1TZ5 0.87 0.90 1 31 30 60 31 0 0 95 P01298 Pancreatic prohormone OS=Homo sapiens GN=PPY PE=1 SV=1
20 : PAHO_MACMU 0.87 0.90 1 31 1 31 31 0 0 36 P33684 Pancreatic hormone OS=Macaca mulatta GN=PPY PE=1 SV=1
21 : PAHO_SHEEP 0.87 0.94 1 31 20 50 31 0 0 78 P01301 Pancreatic prohormone (Fragment) OS=Ovis aries GN=PPY PE=1 SV=2
22 : PAHO_TAPPI 0.87 0.90 1 31 1 31 31 0 0 36 P39659 Pancreatic hormone OS=Tapirus pinchaque GN=PPY PE=1 SV=1
23 : F1S1J2_PIG 0.84 0.90 1 31 30 60 31 0 0 94 F1S1J2 Pancreatic prohormone precursor (Fragment) OS=Sus scrofa GN=PPY PE=3 SV=1
24 : F7DWB2_HORSE 0.84 0.90 1 31 30 60 31 0 0 95 F7DWB2 Uncharacterized protein OS=Equus caballus GN=PPY PE=3 SV=1
25 : H0WYB4_OTOGA 0.84 0.90 1 31 30 60 31 0 0 95 H0WYB4 Uncharacterized protein OS=Otolemur garnettii GN=PPY PE=3 SV=1
26 : L7N129_MYOLU 0.84 0.94 1 31 30 60 31 0 0 99 L7N129 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
27 : PAHO_CANFA 0.84 0.90 1 31 30 60 31 0 0 93 P01299 Pancreatic prohormone OS=Canis familiaris GN=PPY PE=1 SV=3
28 : PAHO_CHICH 0.84 0.90 1 31 1 31 31 0 0 36 P41519 Pancreatic hormone OS=Chinchilla chinchilla GN=PPY PE=1 SV=1
29 : PAHO_EQUPR 0.84 0.90 1 31 1 31 31 0 0 36 P68010 Pancreatic hormone OS=Equus przewalskii GN=PPY PE=1 SV=1
30 : PAHO_EQUZE 0.84 0.90 1 31 1 31 31 0 0 36 P68009 Pancreatic hormone OS=Equus zebra GN=PPY PE=1 SV=1
31 : PAHO_PIG 0.84 0.90 1 31 1 31 31 0 0 65 P01300 Pancreatic prohormone precursor (Fragment) OS=Sus scrofa GN=PPY PE=1 SV=2
32 : S9XLC1_9CETA 0.84 0.90 1 31 30 60 31 0 0 95 S9XLC1 Pancreatic prohormone-like protein OS=Camelus ferus GN=CB1_000148010 PE=3 SV=1
33 : PAHO_ERIEU 0.83 0.90 2 31 2 31 30 0 0 36 P41335 Pancreatic hormone OS=Erinaceus europaeus GN=PPY PE=1 SV=1
34 : F7E3P2_MACMU 0.81 0.90 1 31 30 60 31 0 0 217 F7E3P2 Uncharacterized protein OS=Macaca mulatta PE=3 SV=1
35 : G1QGA1_MYOLU 0.81 0.90 1 31 30 60 31 0 0 96 G1QGA1 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
36 : G5BN79_HETGA 0.81 0.87 1 31 122 152 31 0 0 193 G5BN79 Pancreatic prohormone OS=Heterocephalus glaber GN=GW7_07833 PE=3 SV=1
37 : L7N1L7_MYOLU 0.81 0.90 1 31 30 60 31 0 0 96 L7N1L7 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
38 : PAHO_CERSI 0.81 0.90 1 31 1 31 31 0 0 36 P37999 Pancreatic hormone OS=Ceratotherium simum GN=PPY PE=1 SV=2
39 : PAHO_MOUSE 0.81 0.81 1 31 30 60 31 0 0 100 P10601 Pancreatic prohormone OS=Mus musculus GN=Ppy PE=2 SV=1
40 : Q3UW05_MOUSE 0.81 0.81 1 31 30 60 31 0 0 100 Q3UW05 Putative uncharacterized protein OS=Mus musculus GN=Ppy PE=3 SV=1
41 : Q496X5_MOUSE 0.81 0.81 1 31 30 60 31 0 0 100 Q496X5 Pancreatic polypeptide OS=Mus musculus GN=Ppy PE=3 SV=1
42 : H0VV00_CAVPO 0.77 0.90 1 31 27 57 31 0 0 126 H0VV00 Uncharacterized protein OS=Cavia porcellus GN=Ppy PE=3 SV=1
43 : PAHO_CAVPO 0.77 0.90 1 31 27 57 31 0 0 126 P13083 Pancreatic prohormone OS=Cavia porcellus GN=PPY PE=1 SV=1
44 : G3UG31_LOXAF 0.76 0.83 3 31 32 60 29 0 0 87 G3UG31 Uncharacterized protein OS=Loxodonta africana GN=PPY PE=3 SV=1
45 : F7GDD7_MONDO 0.74 0.84 1 31 28 58 31 0 0 63 F7GDD7 Uncharacterized protein OS=Monodelphis domestica GN=PPY PE=3 SV=1
46 : G1U7C4_RABIT 0.74 0.84 1 31 50 80 31 0 0 115 G1U7C4 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100357679 PE=3 SV=2
47 : PAHO_DIDVI 0.74 0.84 1 31 1 31 31 0 0 36 P18107 Pancreatic hormone OS=Didelphis virginiana GN=PPY PE=1 SV=1
48 : PAHO_RABIT 0.74 0.84 1 31 1 31 31 0 0 36 P41336 Pancreatic hormone OS=Oryctolagus cuniculus GN=PPY PE=1 SV=1
49 : PAHO_RAT 0.74 0.74 1 31 30 60 31 0 0 98 P06303 Pancreatic prohormone OS=Rattus norvegicus GN=Ppy PE=3 SV=1
50 : G3VF05_SARHA 0.71 0.84 1 31 25 55 31 0 0 63 G3VF05 Uncharacterized protein OS=Sarcophilus harrisii PE=3 SV=1
51 : G3VFC8_SARHA 0.71 0.84 1 31 25 55 31 0 0 92 G3VFC8 Uncharacterized protein OS=Sarcophilus harrisii PE=3 SV=1
52 : K7G2P4_PELSI 0.53 0.77 2 31 30 59 30 0 0 96 K7G2P4 Uncharacterized protein OS=Pelodiscus sinensis GN=PYY PE=3 SV=1
53 : M7BP08_CHEMY 0.53 0.77 2 31 30 59 30 0 0 183 M7BP08 Peptide YY-A OS=Chelonia mydas GN=UY3_09036 PE=3 SV=1
54 : PYY_CHICK 0.53 0.73 2 31 3 32 30 0 0 37 P29203 Peptide YY-like OS=Gallus gallus GN=PYY PE=1 SV=1
55 : PYY_LAMFL 0.53 0.77 2 31 29 58 30 0 0 93 P48098 Peptide YY-like OS=Lampetra fluviatilis GN=pyy PE=2 SV=1
56 : Q58VP9_PETMA 0.53 0.77 2 31 29 58 30 0 0 93 Q58VP9 Peptide YY OS=Petromyzon marinus GN=PYY PE=3 SV=1
57 : Q58VQ1_9PETR 0.53 0.77 2 31 29 58 30 0 0 93 Q58VQ1 Peptide YY OS=Ichthyomyzon gagei GN=PYY PE=3 SV=1
58 : V8P2R0_OPHHA 0.53 0.80 2 31 30 59 30 0 0 137 V8P2R0 Uncharacterized protein (Fragment) OS=Ophiophagus hannah GN=L345_05954 PE=3 SV=1
59 : PAHO_LITCT 0.52 0.74 1 31 1 31 31 0 0 36 P15427 Pancreatic hormone OS=Lithobates catesbeiana GN=ppy PE=1 SV=1
60 : B8R1W8_CARAU 0.50 0.73 2 31 30 59 30 0 0 97 B8R1W8 Prepropeptide YY (Precursor) OS=Carassius auratus GN=pyy PE=3 SV=1
61 : C5IG50_DANRE 0.50 0.77 2 31 28 57 30 0 0 95 C5IG50 Peptide YY-A (Fragment) OS=Danio rerio GN=pyya PE=2 SV=1
62 : F7EJQ6_ORNAN 0.50 0.77 2 31 30 59 30 0 0 70 F7EJQ6 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus GN=PYY PE=3 SV=1
63 : G1KDC9_ANOCA 0.50 0.77 2 31 31 60 30 0 0 101 G1KDC9 Uncharacterized protein OS=Anolis carolinensis GN=PYY PE=3 SV=2
64 : G9J5Z9_SILME 0.50 0.80 2 31 30 59 30 0 0 97 G9J5Z9 Prepropeptide YY OS=Silurus meridionalis PE=3 SV=1
65 : H2MSR6_ORYLA 0.50 0.73 2 31 30 59 30 0 0 97 H2MSR6 Uncharacterized protein OS=Oryzias latipes GN=LOC101155694 PE=3 SV=1
66 : PYYA_DANRE 0.50 0.77 2 31 30 59 30 0 0 97 Q9I8P2 Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1
67 : PYY_PELRI 0.50 0.77 2 31 2 31 30 0 0 36 P29204 Peptide YY-like OS=Pelophylax ridibundus PE=1 SV=1
68 : PYY_RAJRH 0.50 0.77 2 31 2 31 30 0 0 36 P29206 Peptide YY-like OS=Raja rhina PE=1 SV=1
69 : Q0IIS5_XENTR 0.50 0.77 2 31 30 59 30 0 0 99 Q0IIS5 Peptide YY OS=Xenopus tropicalis GN=pyy PE=3 SV=1
70 : R4I355_CTEID 0.50 0.73 2 31 30 59 30 0 0 97 R4I355 Prepropeptide YY OS=Ctenopharyngodon idella GN=PYY PE=3 SV=1
71 : S7PKV2_MYOBR 0.50 0.77 2 31 30 59 30 0 0 153 S7PKV2 Pro-neuropeptide Y OS=Myotis brandtii GN=D623_10031705 PE=3 SV=1
72 : SPYY_PHYBI 0.50 0.80 2 31 2 31 30 0 0 36 P80952 Skin peptide tyrosine-tyrosine OS=Phyllomedusa bicolor PE=1 SV=1
73 : W5KTB9_ASTMX 0.50 0.77 2 31 29 58 30 0 0 96 W5KTB9 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 128 51 3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAASAAAAA AAAAAAA A
2 2 A P + 0 0 92 73 1 PPPPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPPPPPPPPPPPPPPPPPP
3 3 A L + 0 0 90 74 87 LLLLLLLLLLLLLLLLLLLLLLLMLLLLMMLLLLQPQLLLLLLLQPQPLQQPPPPPPPSPPVPLPPPPTP
4 4 A E S S- 0 0 131 74 56 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKKKKKKEKKKKKKKKKKK
5 5 A P - 0 0 30 74 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
6 6 A E - 0 0 174 74 82 EEEVVVVEVVVVVVVVVVVVEVVVVDVVVVVVVLDVDVMMMVVVVVVVMVVEEEDDDEHEEQEEEEEEEE
7 7 A Y - 0 0 117 74 85 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYNNSNNNSHNNPSNNNNNNN
8 8 A P > - 0 0 19 74 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
9 9 A G T >4 S- 0 0 54 74 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGPGGGGGGGG
10 10 A D T 34 S- 0 0 169 74 10 DDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDGDDDDDDDDDDDDDDDDDDDDDDDEDDDDEEDDEDND
11 11 A N T 34 S- 0 0 126 74 45 NNNNNNNNNNNNNNNNNNNNNNDNNNDNNNDDNNNNNNYYYDDNDDDDYDDDDANNNNQDDNDDDDDDDD
12 12 A A << - 0 0 25 74 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
13 13 A T > - 0 0 83 74 55 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSSSSSSSTPATSAPASASP
14 14 A P H > S+ 0 0 95 74 5 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPHPPPPPPPPPPPPPPPPPPPPP
15 15 A E H > S+ 0 0 148 74 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQEEEEEEEEEEEEEEEDEEEEEEEEEEE
16 16 A Q H > S+ 0 0 97 74 34 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQQQQQQQQQQQEEEEEQQQEQEEEEEEEEEEE
17 17 A M H X S+ 0 0 57 74 11 MMMMMMMLMMMMMMMMMMMMMMMMMLMMMMMMMMLMLMMMMMMMMMMMRMMMMIMMMMLLLLMLLLMLML
18 18 A H H X S+ 0 0 140 74 9 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA
19 19 A Q H X S+ 0 0 115 74 52 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQQKEKEQRRKKQRRRKQKKQKKKKKKKK
20 20 A Y H X S+ 0 0 40 74 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
21 21 A A H X S+ 0 0 22 74 95 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAEEEAAAAVAVEAAFFFKKKLYYYFFYYYLYLY
22 22 A H H X S+ 0 0 119 74 51 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAATAASSSAAAASTTASTTTTSTT
23 23 A Q H X S+ 0 0 108 74 62 EEEEDDEEDDDDEDDEEEDDEEEEEEEEEEEEEEEEEEQQQEEEEDEDQEEAAAAAADDAASAAAAAAAA
24 24 A L H X S+ 0 0 42 74 6 LLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLMLLLLLMMLLLLLLLLLLLVVVLLLLLLLLLLLLL
25 25 A R H X S+ 0 0 174 74 8 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHRRRRRRRRRRRRRRRRRRRRRRRRYRRRRRRRRRRR
26 26 A R H X S+ 0 0 167 74 49 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRRRRRHHHHHHHQHHHHHHHHHHH
27 27 A Y H >X S+ 0 0 68 74 3 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYSYYYYYYYYYYYYYYYYYYYYYYYYYY
28 28 A I H 3< S+ 0 0 101 74 1 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILIIIIIIII
29 29 A N H 3< S+ 0 0 136 74 4 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNN
30 30 A M H << 0 0 102 74 31 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMTTTMMMRMRMTRRLLLLLLLFLLLLLLLLLLL
31 31 A L < 0 0 135 74 34 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVVIIIVIIIVVIIIVIVI
## ALIGNMENTS 71 - 73
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A A 0 0 128 51 3
2 2 A P + 0 0 92 73 1 PPP
3 3 A L + 0 0 90 74 87 SPP
4 4 A E S S- 0 0 131 74 56 KKK
5 5 A P - 0 0 30 74 0 PPP
6 6 A E - 0 0 174 74 82 EEE
7 7 A Y - 0 0 117 74 85 KSN
8 8 A P > - 0 0 19 74 0 PPP
9 9 A G T >4 S- 0 0 54 74 6 GGG
10 10 A D T 34 S- 0 0 169 74 10 DED
11 11 A N T 34 S- 0 0 126 74 45 NDD
12 12 A A << - 0 0 25 74 0 AAA
13 13 A T > - 0 0 83 74 55 SSS
14 14 A P H > S+ 0 0 95 74 5 APP
15 15 A E H > S+ 0 0 148 74 4 EEE
16 16 A Q H > S+ 0 0 97 74 34 EEE
17 17 A M H X S+ 0 0 57 74 11 LML
18 18 A H H X S+ 0 0 140 74 9 ANA
19 19 A Q H X S+ 0 0 115 74 52 RKK
20 20 A Y H X S+ 0 0 40 74 0 YYY
21 21 A A H X S+ 0 0 22 74 95 YLY
22 22 A H H X S+ 0 0 119 74 51 STT
23 23 A Q H X S+ 0 0 108 74 62 AAA
24 24 A L H X S+ 0 0 42 74 6 LLL
25 25 A R H X S+ 0 0 174 74 8 RRR
26 26 A R H X S+ 0 0 167 74 49 HHH
27 27 A Y H >X S+ 0 0 68 74 3 YYY
28 28 A I H 3< S+ 0 0 101 74 1 III
29 29 A N H 3< S+ 0 0 136 74 4 NNN
30 30 A M H << 0 0 102 74 31 LLL
31 31 A L < 0 0 135 74 34 IVI
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 51 0 0 0.097 3 0.97
2 2 A 0 0 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 0 73 0 0 0.072 2 0.98
3 3 A 1 55 0 4 0 0 0 0 0 27 3 1 0 0 0 0 8 0 0 0 74 0 0 1.228 41 0.13
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 28 0 72 0 0 74 0 0 0.596 19 0.44
5 5 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
6 6 A 51 1 0 5 0 0 0 0 0 0 0 0 0 1 0 0 1 31 0 8 74 0 0 1.241 41 0.17
7 7 A 0 0 0 0 0 0 70 0 0 1 5 0 0 1 0 1 0 0 20 0 74 0 0 0.904 30 0.15
8 8 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 97 0 1 0 0 0 0 1 0 0 0 0 0 74 0 0 0.143 4 0.93
10 10 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 8 1 89 74 0 0 0.422 14 0.89
11 11 A 0 0 0 0 0 0 5 0 1 0 0 0 0 0 0 0 1 0 57 35 74 0 0 0.963 32 0.54
12 12 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 5 4 18 73 0 0 0 0 0 0 0 0 74 0 0 0.823 27 0.44
14 14 A 0 0 0 0 0 0 0 0 1 97 0 0 0 1 0 0 0 0 0 0 74 0 0 0.143 4 0.94
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 96 0 1 74 0 0 0.195 6 0.96
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 28 0 0 74 0 0 0.596 19 0.66
17 17 A 0 20 1 77 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 74 0 0 0.641 21 0.89
18 18 A 0 0 0 0 0 0 0 0 96 0 0 1 0 1 0 0 0 0 1 0 74 0 0 0.214 7 0.91
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 8 23 65 3 0 0 74 0 0 0.978 32 0.47
20 20 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.000 0 1.00
21 21 A 3 5 0 0 7 0 14 0 62 0 0 0 0 0 0 4 0 5 0 0 74 0 0 1.291 43 0.04
22 22 A 0 0 0 0 0 0 0 0 70 0 9 19 0 1 0 0 0 0 0 0 74 0 0 0.844 28 0.48
23 23 A 0 0 0 0 0 0 0 0 26 0 1 0 0 0 0 0 7 47 0 19 74 0 0 1.258 42 0.37
24 24 A 4 91 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.378 12 0.94
25 25 A 0 0 0 0 0 0 1 0 0 0 0 0 0 1 97 0 0 0 0 0 74 0 0 0.143 4 0.92
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 28 69 1 1 0 0 0 74 0 0 0.730 24 0.50
27 27 A 0 0 0 0 0 0 99 0 0 0 1 0 0 0 0 0 0 0 0 0 74 0 0 0.072 2 0.96
28 28 A 0 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.072 2 0.98
29 29 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 99 0 74 0 0 0.072 2 0.96
30 30 A 0 28 0 59 1 0 0 0 0 0 0 5 0 0 5 0 0 0 0 0 74 0 0 1.040 34 0.68
31 31 A 12 70 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 74 0 0 0.810 27 0.65
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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