Complet list of 1uqv hssp file
Complete list of 1uqv.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1UQV
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER SIGNALING PROTEIN 20-OCT-03 1UQV
COMPND MOL_ID: 1; MOLECULE: STE50 PROTEIN; CHAIN: A; FRAGMENT: SAM DOMAIN, RE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; ORGANISM_COM
AUTHOR S.J.GRIMSHAW,H.R.MOTT,K.M.STOTT,P.R.NIELSEN,K.A.EVETTS, L.J.HOPKINS,D.
DBREF 1UQV A 24 26 PDB 1UQV 1UQV 24 26
DBREF 1UQV A 27 108 UNP P25344 ST50_YEAST 27 108
SEQLENGTH 85
NCHAIN 1 chain(s) in 1UQV data set
NALIGN 32
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A6ZTF8_YEAS7 1.00 1.00 4 85 27 108 82 0 0 346 A6ZTF8 Protein kinase regulator OS=Saccharomyces cerevisiae (strain YJM789) GN=STE50 PE=4 SV=1
2 : B3LU50_YEAS1 1.00 1.00 4 85 27 108 82 0 0 346 B3LU50 Protein STE50 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_05376 PE=4 SV=1
3 : B5VES6_YEAS6 1.00 1.00 4 85 27 108 82 0 0 346 B5VES6 YCL032Wp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_30340 PE=4 SV=1
4 : C7GSY9_YEAS2 1.00 1.00 4 85 27 108 82 0 0 346 C7GSY9 Ste50p OS=Saccharomyces cerevisiae (strain JAY291) GN=STE50 PE=4 SV=1
5 : C8Z457_YEAS8 1.00 1.00 4 85 27 108 82 0 0 346 C8Z457 Ste50p OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=EC1118_1C17_0386g PE=4 SV=1
6 : E7KA06_YEASA 1.00 1.00 4 85 27 108 82 0 0 346 E7KA06 Ste50p OS=Saccharomyces cerevisiae (strain AWRI796) GN=AWRI796_0459 PE=4 SV=1
7 : E7LRV4_YEASV 1.00 1.00 4 85 27 108 82 0 0 176 E7LRV4 Ste50p OS=Saccharomyces cerevisiae (strain VIN 13) GN=VIN13_0452 PE=4 SV=1
8 : E7QC12_YEASZ 1.00 1.00 4 85 27 108 82 0 0 157 E7QC12 Ste50p OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=VL3_0454 PE=4 SV=1
9 : G2W9Z3_YEASK 1.00 1.00 4 85 27 108 82 0 0 346 G2W9Z3 K7_Ste50p OS=Saccharomyces cerevisiae (strain Kyokai no. 7 / NBRC 101557) GN=K7_STE50 PE=4 SV=1
10 : H0GD28_9SACH 1.00 1.00 4 85 27 108 82 0 0 346 H0GD28 Ste50p OS=Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 GN=VIN7_0497 PE=4 SV=1
11 : N1P660_YEASC 1.00 1.00 4 85 27 108 82 0 0 346 N1P660 Ste50p OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) GN=CENPK1137D_4467 PE=4 SV=1
12 : STE50_YEAST 1UQV 1.00 1.00 4 85 27 108 82 0 0 346 P25344 Protein STE50 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE50 PE=1 SV=1
13 : W7Q712_YEASX 1.00 1.00 4 85 27 108 82 0 0 346 W7Q712 Ste50p OS=Saccharomyces cerevisiae R008 GN=Ste50 PE=4 SV=1
14 : W7R4N0_YEASX 1.00 1.00 4 85 27 108 82 0 0 346 W7R4N0 Ste50p OS=Saccharomyces cerevisiae P283 GN=Ste50 PE=4 SV=1
15 : E7NFB1_YEASO 0.99 0.99 4 85 27 108 82 0 0 346 E7NFB1 Ste50p OS=Saccharomyces cerevisiae (strain FostersO) GN=FOSTERSO_0439 PE=4 SV=1
16 : E7Q1C1_YEASB 0.99 0.99 4 85 27 108 82 0 0 346 E7Q1C1 Ste50p OS=Saccharomyces cerevisiae (strain FostersB) GN=FOSTERSB_0442 PE=4 SV=1
17 : H0GRT3_9SACH 0.84 0.96 4 85 27 108 82 0 0 344 H0GRT3 Ste50p OS=Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 GN=VIN7_5824 PE=4 SV=1
18 : J4TXQ0_SACK1 0.84 0.96 4 85 27 108 82 0 0 344 J4TXQ0 STE50-like protein OS=Saccharomyces kudriavzevii (strain ATCC MYA-4449 / AS 2.2408 / CBS 8840 / NBRC 1802 / NCYC 2889) GN=YCL032W PE=4 SV=1
19 : J8PQW9_SACAR 0.82 0.94 4 85 27 108 82 0 0 346 J8PQW9 Ste50p OS=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) GN=SU7_0339 PE=4 SV=1
20 : G8BQ67_TETPH 0.51 0.79 10 76 20 87 68 1 1 328 G8BQ67 Uncharacterized protein OS=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) GN=TPHA0B04790 PE=4 SV=1
21 : S6EX59_ZYGB2 0.49 0.78 2 79 24 101 78 0 0 324 S6EX59 ZYBA0S14-01882g1_1 OS=Zygosaccharomyces bailii (strain CLIB 213 / ATCC 58445 / CBS 680 / CCRC 21525 / NBRC 1098 / NCYC 1416 / NRRL Y-2227) GN=BN860_01882g PE=4 SV=1
22 : W0VJ87_ZYGBA 0.49 0.78 2 79 16 93 78 0 0 316 W0VJ87 Related to STE50-Pheromone response pathway protein OS=Zygosaccharomyces bailii ISA1307 GN=ZBAI_01593 PE=4 SV=1
23 : H2ATI6_KAZAF 0.48 0.79 2 82 7 87 81 0 0 282 H2ATI6 Uncharacterized protein OS=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) GN=KAFR0D00390 PE=4 SV=1
24 : B2G430_ZYGRO 0.47 0.81 2 79 13 90 78 0 0 314 B2G430 Protein STE50 OS=Zygosaccharomyces rouxii GN=Zr_STE50 PE=4 SV=1
25 : C5DZ24_ZYGRC 0.47 0.81 2 79 13 90 78 0 0 314 C5DZ24 ZYRO0F17644p OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=ZYRO0F17644g PE=4 SV=1
26 : G0VAU1_NAUCC 0.46 0.82 1 76 31 106 76 0 0 382 G0VAU1 Uncharacterized protein OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=NCAS0B08840 PE=4 SV=1
27 : G8ZQR2_TORDC 0.45 0.85 2 79 17 94 78 0 0 315 G8ZQR2 Uncharacterized protein OS=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) GN=TDEL0C06600 PE=4 SV=1
28 : W0VRR2_ZYGBA 0.45 0.81 2 79 16 93 78 0 0 316 W0VRR2 Related to STE50-Pheromone response pathway protein OS=Zygosaccharomyces bailii ISA1307 GN=ZBAI_05089 PE=4 SV=1
29 : J7RW15_KAZNA 0.43 0.72 4 85 39 130 92 1 10 371 J7RW15 Uncharacterized protein OS=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC 22969 / KCTC 17520 / NBRC 10181 / NCYC 3082) GN=KNAG0C00480 PE=4 SV=1
30 : Q6FX88_CANGA 0.43 0.73 2 82 11 91 81 0 0 322 Q6FX88 Strain CBS138 chromosome B complete sequence OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0B00858g PE=4 SV=1
31 : G0W313_NAUDC 0.41 0.76 2 80 60 139 80 1 1 438 G0W313 Uncharacterized protein OS=Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) GN=NDAI0A00430 PE=4 SV=1
32 : A7TFA3_VANPO 0.39 0.75 1 80 7 86 80 0 0 335 A7TFA3 Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_2000p96 PE=4 SV=1
## ALIGNMENTS 1 - 32
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 24 A G 0 0 122 3 40 S S
2 25 A S + 0 0 63 12 46 SSSSSTAS GTS
3 26 A H + 0 0 172 12 69 PPQPPPPP TTM
4 27 A M S S- 0 0 130 32 46 MMMMMMMMMMMMMMMMMMI FFIFFLVFILLV
5 28 A N S S+ 0 0 121 32 84 NNNNNNNNNNNNNNNNNNN IINVVKIINLDV
6 29 A N - 0 0 62 32 47 NNNNNNNNNNNNNNNNNNN NNNGGQTNDKED
7 30 A E - 0 0 122 32 34 EEEEEEEEEEEEEEEEEEE EEGEEEDEGDQV
8 31 A D >> - 0 0 97 32 36 DDDDDDDDDDDDDDDDDDD EEDEENDEDNSN
9 32 A F T 34 S+ 0 0 95 32 14 FFFFFFFFFFFFFFFFYYY YYYYYYFYWFFC
10 33 A S T 34 S+ 0 0 96 33 79 SSSSSSSSSSSSSSSSSSSSIIATTETTKDMN
11 34 A Q T <4 S+ 0 0 133 33 74 QQQQQQQQQQQQQQQQQQQKSSNRRHNSEKES
12 35 A W < + 0 0 33 33 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
13 36 A S > - 0 0 60 33 27 SSSSSSSSSSSSSSSSSSSSSSTSSSTSSTST
14 37 A V H > S+ 0 0 55 33 25 VVVVVVVVVVVVVVVVVVVAVVVVVVIVVTVT
15 38 A D H > S+ 0 0 100 33 34 DDDDDDDDDDDDDDDDDDDEEEDEEQNEEDNQ
16 39 A D H > S+ 0 0 64 33 18 DDDDDDDDDDDDDDDDDDDDDDEDDEEDNEDE
17 40 A V H X S+ 0 0 13 33 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
18 41 A I H X S+ 0 0 6 33 26 IIIIIIIIIIIIIIIIIIIAVVVVVVVVVVVV
19 42 A T H X S+ 0 0 52 33 74 TTTTTTTTTTTTTTTTSSTSKKSKKTAKSQKA
20 43 A W H X S+ 0 0 84 33 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
21 44 A C H >X S+ 0 0 3 33 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22 45 A I H >X S+ 0 0 0 33 71 IIIIIIIIIIIIIIIIIIIVAAKIISTVQGFM
23 46 A S H 3< S+ 0 0 73 33 78 SSSSSSSSSSSSSSSSPPSSFFSFFMSFTTKS
24 47 A T H << S+ 0 0 59 33 62 TTTTTTTTTTTTTTTTTTTTSSTSSESSSVSS
25 48 A L H << S- 0 0 26 33 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
26 49 A E S < S+ 0 0 131 33 41 EEEEEEEEEEEEEEEEEEEDEEKEESEENGSG
27 50 A V S S- 0 0 57 33 41 VVVVVVVVVVVVVVVVVVLIIILLLLIILKLI
28 51 A E > - 0 0 132 33 69 EEEEEEEEEEEEEEEEEEEDPPPQQATPPDNP
29 52 A E T 3 S+ 0 0 108 33 26 EEEEEEEEEEEEEEEEEEKNEEDDDEEEDEDQ
30 53 A T T 3 + 0 0 102 33 78 TTTTTTTTTTTTTTTTSSTEDDDEESEDDQID
31 54 A D S X S- 0 0 71 33 31 DDDDDDDDDDDDDDDDDDDSDDNDDDDNDEnS
32 55 A P T >> S+ 0 0 67 33 62 PPPPPPPPPPPPPPPPVVPEAASPPSLAVPpT
33 56 A L H 3> S+ 0 0 17 33 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
34 57 A C H <> S+ 0 0 39 33 58 CCCCCCCCCCCCCCCCCCFYVVCVVCVVCFIC
35 58 A Q H <> S+ 0 0 106 33 70 QQQQQQQQQQQQQQQQRRQNNNLDDQENRTKN
36 59 A R H X S+ 0 0 114 33 68 RRRRRRRRRRRRRRRRNNKNQQSQQQKQQRNN
37 60 A L H < S+ 0 0 21 33 8 LLLLLLLLLLLLLLLLLLLLLLLLLLILLILL
38 61 A R H < S+ 0 0 167 31 55 RRRRRRRRRRRRRRXXRRRIRRVRRKRHARVH
39 62 A E H < S+ 0 0 127 33 58 EEEEEEEEEEEEEEEEEEDESSEKKISSEDDQ
40 63 A N S < S- 0 0 69 33 18 NNNNNNNNNNNNNNNNNNNQNNNNNNNNNNHH
41 64 A D + 0 0 125 33 53 DDDDDDDDDDDDDDDDDDDEAADAASEAENDN
42 65 A I - 0 0 42 33 2 IIIIIIIIIIIIIIIIIIIIIIVIIIIIIIII
43 66 A V > - 0 0 48 33 93 VVVVVVVVVVVVVVVVVVVSNNSNNSTNTDST
44 67 A G G > S+ 0 0 1 33 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
45 68 A D G 3 S+ 0 0 101 33 30 DDDDDDDDDDDDDDDDDDDDEESEEDEEDSDD
46 69 A L G X> S+ 0 0 73 33 16 LLLLLLLLLLLLLLLLLLLLLLILLVLLLVVL
47 70 A L H X> S+ 0 0 20 33 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
48 71 A P H 34 S+ 0 0 24 33 68 PPPPPPPPPPPPPPPPPPPKGGKGGSPGPQDE
49 72 A E H <4 S+ 0 0 131 33 3 EEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEE
50 73 A L H S+ 0 0 82 33 7 LLLLLLLLLLLLLLLLLLLLLLLLLMFLLLIL
53 76 A Q H > S+ 0 0 141 33 44 QQQQQQQQQQQQQQQQQQQQDDDEENEDDQNE
54 77 A D H X S+ 0 0 70 33 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
55 78 A C H >< S+ 0 0 3 33 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
56 79 A Q H >< S+ 0 0 35 33 56 QQQQQQQQQQQQQQQQQQQKRRKKKKKKKKKK
57 80 A D H 3< S+ 0 0 108 33 21 DDDDDDDDDDDDDDDDEEEDEEDEEEEEEEDE
58 81 A L T << S+ 0 0 13 33 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
59 82 A C S < S- 0 0 19 33 8 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCC
60 83 A D S S- 0 0 157 33 40 DDDDDDDDDDDDDDDDEEEgEEDEESGEtDDG
61 84 A G S S+ 0 0 51 33 48 GGGGGGGGGGGGGGGGDDDaGGSDDNGGgNHN
62 85 A D >> - 0 0 60 33 20 DDDDDDDDDDDDDDDDDDDNDDNDDDDNTDDD
63 86 A L H 3> S+ 0 0 102 33 28 LLLLLLLLLLLLLLLLLLLLLLLLLLLLVLNR
64 87 A N H 3> S+ 0 0 105 33 70 NNNNNNNNNNNNNNNNNNNKSSKSSKSSQKKG
65 88 A K H <> S+ 0 0 38 33 77 KKKKKKKKKKKKKKKKKKKLLLLLLRKLKEKL
66 89 A A H X S+ 0 0 2 33 6 AAAAAAAAAAAAAAAAAAAAAAAAAASAAAAA
67 90 A I H X S+ 0 0 74 33 4 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIL
68 91 A K H X S+ 0 0 101 33 27 KKKKKKKKKKKKKKKKKKKKRRKRRKRRRKKR
69 92 A F H X S+ 0 0 15 33 8 FFFFFFFFFFFFFFFFFFFFFFLFFLLFFLLF
70 93 A K H X S+ 0 0 51 33 7 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQK
71 94 A I H >X S+ 0 0 70 33 27 IIIIIIIIIIIIIIIIIIILVVIVVIVVLLLV
72 95 A L H 3X S+ 0 0 50 33 45 LLLLLLLLLLLLLLLLLLLQLLSLLALLMWAL
73 96 A I H 3X S+ 0 0 12 33 44 IIIIIIIIIIIIIIIIIIILLLICCLLLILFL
74 97 A N H