Complet list of 1tvt hssp file
Complete list of 1tvt.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TVT
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER TRANSCRIPTION REGULATION 07-JUL-94 1TVT
COMPND MOL_ID: 1; MOLECULE: TRANSACTIVATOR PROTEIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: EQUINE INFECTIOUS ANEMIA VIRUS; ORGANI
AUTHOR P.ROESCH,D.WILLBOLD
DBREF 1TVT A 1 75 UNP Q9WM01 Q9WM01_9RETR 1 75
SEQLENGTH 75
NCHAIN 1 chain(s) in 1TVT data set
NALIGN 34
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : O89467_9RETR1TVT 0.99 0.99 1 75 4 78 75 0 0 78 O89467 Protein Tat OS=Equine infectious anemia virus GN=tat PE=1 SV=1
2 : Q89509_9RETR 0.99 0.99 1 75 9 83 75 0 0 83 Q89509 Protein Tat (Fragment) OS=Equine infectious anemia virus PE=2 SV=1
3 : O89471_9RETR 0.97 0.97 1 75 4 78 75 0 0 78 O89471 Protein Tat OS=Equine infectious anemia virus GN=tat PE=3 SV=1
4 : Q66743_9RETR 0.97 0.99 1 75 1 75 75 0 0 75 Q66743 Protein Tat OS=Equine infectious anemia virus PE=3 SV=1
5 : TAT_EIAVC 2PK2 0.97 0.99 1 75 1 75 75 0 0 75 P32544 Protein Tat OS=Equine infectious anemia virus (isolate CL22) GN=tat PE=1 SV=2
6 : TAT_EIAVY 2W2H 0.97 0.99 1 75 1 75 75 0 0 75 P20920 Protein Tat OS=Equine infectious anemia virus (strain Wyoming) GN=tat PE=1 SV=3
7 : Q66744_9RETR 0.95 0.97 1 75 1 75 75 0 0 75 Q66744 Protein Tat OS=Equine infectious anemia virus GN=tat PE=3 SV=2
8 : E9KU65_9RETR 0.82 0.91 1 75 4 79 76 1 1 79 E9KU65 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
9 : E9KUB9_9RETR 0.82 0.92 1 75 4 79 76 1 1 79 E9KUB9 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
10 : E9KUC5_9RETR 0.82 0.89 1 75 4 79 76 1 1 79 E9KUC5 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
11 : Q991T2_9RETR 0.82 0.91 1 75 5 80 76 1 1 80 Q991T2 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
12 : Q991T4_9RETR 0.82 0.91 1 75 10 85 76 1 1 85 Q991T4 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
13 : E2E2G2_9RETR 0.80 0.91 1 75 4 79 76 1 1 79 E2E2G2 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
14 : E2E2H9_9RETR 0.80 0.91 1 75 4 79 76 1 1 79 E2E2H9 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
15 : E2E2K9_9RETR 0.80 0.89 1 75 4 79 76 1 1 79 E2E2K9 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
16 : E9KU95_9RETR 0.80 0.91 1 75 4 79 76 1 1 79 E9KU95 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
17 : E9KUD1_9RETR 0.80 0.91 1 75 4 79 76 1 1 79 E9KUD1 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
18 : E2E2G8_9RETR 0.79 0.89 1 75 4 79 76 1 1 79 E2E2G8 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
19 : E2E2H4_9RETR 0.79 0.89 1 75 4 79 76 1 1 79 E2E2H4 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
20 : E2E2I5_9RETR 0.79 0.89 1 74 4 78 75 1 1 79 E2E2I5 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
21 : E2E2M1_9RETR 0.79 0.88 1 75 4 79 76 1 1 79 E2E2M1 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
22 : E9KU89_9RETR 0.79 0.89 1 75 4 79 76 1 1 79 E9KU89 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
23 : E9KUA1_9RETR 0.79 0.89 1 75 4 79 76 1 1 79 E9KUA1 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
24 : E9KUE9_9RETR 0.79 0.89 1 75 4 79 76 1 1 79 E9KUE9 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
25 : K7WBM8_9RETR 0.79 0.88 1 75 4 79 76 1 1 79 K7WBM8 Protein Tat OS=Equine infectious anemia virus GN=tat PE=3 SV=1
26 : Q991T3_9RETR 0.79 0.89 1 75 9 84 76 1 1 84 Q991T3 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
27 : Q991T7_9RETR 0.79 0.89 1 75 9 84 76 1 1 84 Q991T7 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
28 : E2E2F6_9RETR 0.78 0.88 1 75 4 79 76 1 1 79 E2E2F6 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
29 : E2E2J7_9RETR 0.78 0.89 1 75 4 79 76 1 1 79 E2E2J7 Protein Tat OS=Equine infectious anemia virus GN=s1 PE=3 SV=1
30 : Q991T5_9RETR 0.78 0.88 1 75 9 84 76 1 1 84 Q991T5 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
31 : Q991T1_9RETR 0.76 0.87 1 75 9 84 76 1 1 84 Q991T1 Protein Tat (Fragment) OS=Equine infectious anemia virus GN=tat PE=2 SV=1
32 : Q66750_9RETR 0.50 0.62 1 74 9 81 74 1 1 255 Q66750 DEL TM protein OS=Equine infectious anemia virus PE=4 SV=1
33 : Q66745_9RETR 0.49 0.62 1 74 1 73 74 1 1 246 Q66745 Tat protein (Fragment) OS=Equine infectious anemia virus GN=tat PE=4 SV=2
34 : Q991T6_9RETR 0.42 0.53 1 74 1 73 74 1 1 75 Q991T6 Putative uncharacterized protein ttm (Fragment) OS=Equine infectious anemia virus GN=ttm PE=2 SV=1
## ALIGNMENTS 1 - 34
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A L 0 0 200 35 6 LLLMMMMLLLLLLLLLLLLLLLLLLLLLLLLLMM
2 2 A E - 0 0 109 35 8 AAAAAAAAAAAAVAAAAAAAAAAAAAAAAAAAAA
3 3 A D S S+ 0 0 24 35 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
4 4 A R S S+ 0 0 36 35 39 RRRRRRRRHRRRHHRHHHHHRHHHRHHHHRHRRH
5 5 A R S > S+ 0 0 110 35 2 RRRRRRRRRRRRRRRRRRRRRKRRRRRRRRRRRR
6 6 A I T 3 S+ 0 0 57 35 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 7 A P T 3 S- 0 0 67 35 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
8 8 A G S < S+ 0 0 68 35 78 GGGGGGGRRRRRRRRRRRRRRRRRRRRRRRRGGR
9 9 A T > - 0 0 5 35 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
10 10 A A T 4 S- 0 0 49 35 7 AAAAAAAAAAAAAAAAAAAAAAVAAAAVAAAAAA
11 11 A E T 4 S- 0 0 49 35 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
12 12 A E T 4 S+ 0 0 48 35 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
13 13 A N S < S- 0 0 107 35 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
14 14 A L S S- 0 0 112 35 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
15 15 A Q - 0 0 92 35 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
16 16 A K S S- 0 0 50 35 16 KKKKKKKKKKKKKKTKKKKKTKKKTKKKKTKKKK
17 17 A S S S+ 0 0 37 35 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
18 18 A S + 0 0 57 35 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
19 19 A G S S- 0 0 76 35 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
20 20 A G S S+ 0 0 88 35 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
21 21 A V + 0 0 98 35 7 VVVVVVVVVVVVVVVVVVVVAVVVVVVVVAVVVV
22 22 A P - 0 0 56 35 16 PPPPPPPPPPPPPPPPPTTTPPPPPPPTTPPPPP
23 23 A G > - 0 0 24 35 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
24 24 A Q H >> S+ 0 0 102 35 36 QQQQQQQHHHHHHHHHHHHHHHHHQHHHHHHQQH
25 25 A N H 34 S+ 0 0 85 35 5 NNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNN
26 26 A T H 34 S- 0 0 51 35 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
27 27 A G H << S+ 0 0 4 35 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
28 28 A G S < S- 0 0 30 35 78 GGGGGGGRRRRRRRRRRRRRRRRRRRRRRRRGGR
29 29 A Q S S+ 0 0 171 35 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
30 30 A E S S- 0 0 81 35 60 EEVEEEEEEEEEEEEEEEEEEEEEEEEEEEEIII
31 31 A A + 0 0 31 35 88 AAAAAAASSSSSSSSSSSSSSSSSPSSSSSSLLL
32 32 A R + 0 0 96 35 60 RRRRRRGPPPPPPPPPPPPPPPPPPPPPPPPRRR
33 33 A P S S- 0 0 31 35 35 PPPPPPPppppppppppppppppppppppppAAG
34 34 A N S > S+ 0 0 105 32 55 NNNNNNNssssssssssssssssssssssss...
35 35 A Y T 3 S- 0 0 30 35 39 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYLLL
36 36 A H T >>>S- 0 0 7 35 54 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHWWL
37 37 A a T <45 - 0 0 56 35 61 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCKKT
38 38 A Q T 345S+ 0 0 60 35 54 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVM
39 39 A L T <45S+ 0 0 37 35 38 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTTM
40 40 A a T <5S+ 0 0 67 35 26 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSS
41 41 A F < + 0 0 3 35 69 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFGGG
42 42 A L S S+ 0 0 99 35 56 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSAAA
43 43 A R S S- 0 0 154 35 59 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRGGG
44 44 A S S S+ 0 0 11 35 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
45 45 A L - 0 0 2 35 62 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSSS
46 46 A G S S- 0 0 18 35 9 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGA
47 47 A I S S- 0 0 18 35 52 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIISSS
48 48 A D + 0 0 27 35 49 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDRRR
49 49 A Y + 0 0 1 35 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
50 50 A L - 0 0 31 35 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
51 51 A D - 0 0 2 35 45 DDDDDDDDDDDDDDDDDDDDDDDDDADDDDDKKR
52 52 A A S S+ 0 0 22 35 73 AAAAAAPSSSSSSSSSSSSSSSSSPSSSSSSKKK
53 53 A S S S+ 0 0 61 35 44 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSKKR
54 54 A L S S+ 0 0 98 35 19 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFY
55 55 A R - 0 0 66 34 66 RRRRRRRKKKKKKKKKKKKKKKKKRKKKKKKHXY
56 56 A K S S- 0 0 106 35 38 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKHRH
57 57 A K S S+ 0 0 142 35 7 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKR
58 58 A N >> + 0 0 48 35 36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNHHH
59 59 A K T 34 S+ 0 0 18 35 49 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKAAA
60 60 A Q T 34 S+ 0 0 133 35 52 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSS
61 61 A R T <4 S+ 0 0 158 35 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
62 62 A L S X S- 0 0 109 35 80 LLLLLLLQQEQQQQQQQQQQQQQQKQQQQQQEEG
63 63 A K T 4 S+ 0 0 149 35 39 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKDDD
64 64 A A T >> S+ 0 0 58 35 48 AAAAAAAAAAAAAAAAAAAAAAAAQAVAAAVTTV
65 65 A I T 34 S+ 0 0 50 35 67 IIIIIIIIIIIIIIIIIIIIIIIILIIIIIIWWW
66 66 A Q T 3< S+ 0 0 92 35 75 QQQQQQQKRMKKKRKKKRKRKKRRQRKRKKRDDA
67 67 A Q T <4 S+ 0 0 100 35 54 QQQQQQQEEEEEEEEEEEEEEGEEREEEEEEQQR
68 68 A G < - 0 0 24 35 18 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAAG
69 69 A R S S+ 0 0 209 35 43 RRRRRRRRRRRRRRRRRRRRRRRRERRRRRRQQP
70 70 A Q S S- 0 0 53 35 75 QQQQQQQPQPPPPPPPSPPPPPPPQPSPPPPHHV
71 71 A P S S- 0 0 10 35 62 PPPPPPPPPPPPPPPPPPPPPPPLPPPPPPPNNY
72 72 A Q S > S- 0 0 73 35 61 QQQQQQQQQQQQQQQQQQQQQQQQKQQQQKQIIA
73 73 A Y T 3 - 0 0 80 35 27 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHY
74 74 A L T 3 0 0 86 35 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLPLLL
75 75 A L < 0 0 165 31 0 LLLLLLLLLLLLLLLLLLL LLLLLLLLLLL
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 83 0 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.458 15 0.93
2 2 A 3 0 0 0 0 0 0 0 94 0 0 0 0 0 0 0 0 3 0 0 35 0 0 0.259 8 0.92
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 35 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 49 51 0 0 0 0 0 35 0 0 0.693 23 0.61
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 3 0 0 0 0 35 0 0 0.130 4 0.98
6 6 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 29 0 0 0 0 0 0 71 0 0 0 0 0 35 0 0 0.598 19 0.21
9 9 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
10 10 A 6 0 0 0 0 0 0 0 94 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.219 7 0.93
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 35 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 35 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 35 0 0 0.000 0 1.00
14 14 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 35 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 89 0 0 0 0 35 0 0 0.355 11 0.83
17 17 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
19 19 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
21 21 A 94 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.219 7 0.92
22 22 A 0 0 0 0 0 0 0 0 0 86 0 14 0 0 0 0 0 0 0 0 35 0 0 0.410 13 0.84
23 23 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 69 0 0 31 0 0 0 35 0 0 0.622 20 0.64
25 25 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 97 0 35 0 0 0.130 4 0.94
26 26 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 29 0 0 0 0 0 0 71 0 0 0 0 0 35 0 0 0.598 19 0.21
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 35 0 0 0.000 0 1.00
30 30 A 3 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89 0 0 35 0 0 0.420 14 0.40
31 31 A 0 9 0 0 0 0 0 0 23 3 66 0 0 0 0 0 0 0 0 0 35 0 0 0.925 30 0.11
32 32 A 0 0 0 0 0 0 0 3 0 69 0 0 0 0 29 0 0 0 0 0 35 0 0 0.718 23 0.40
33 33 A 0 0 0 0 0 0 0 3 6 91 0 0 0 0 0 0 0 0 0 0 35 3 24 0.347 11 0.64
34 34 A 0 0 0 0 0 0 0 0 0 0 75 0 0 0 0 0 0 0 25 0 32 0 0 0.562 18 0.44
35 35 A 0 9 0 0 0 0 91 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.293 9 0.60
36 36 A 0 3 0 0 0 6 0 0 0 0 0 0 0 91 0 0 0 0 0 0 35 0 0 0.347 11 0.46
37 37 A 0 0 0 0 0 0 0 0 0 0 0 3 91 0 0 6 0 0 0 0 35 0 0 0.347 11 0.39
38 38 A 6 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 91 0 0 0 35 0 0 0.347 11 0.46
39 39 A 0 91 0 3 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 35 0 0 0.347 11 0.62
40 40 A 0 0 0 0 0 0 0 0 0 0 9 0 91 0 0 0 0 0 0 0 35 0 0 0.293 9 0.74
41 41 A 0 0 0 0 91 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.293 9 0.31
42 42 A 0 89 0 0 0 0 0 0 9 0 3 0 0 0 0 0 0 0 0 0 35 0 0 0.420 14 0.43
43 43 A 0 0 0 0 0 0 0 9 0 0 0 0 0 0 91 0 0 0 0 0 35 0 0 0.293 9 0.40
44 44 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
45 45 A 0 91 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 35 0 0 0.293 9 0.37
46 46 A 0 0 0 0 0 0 0 97 3 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.130 4 0.91
47 47 A 0 0 91 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 0 0 35 0 0 0.293 9 0.47
48 48 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 91 35 0 0 0.293 9 0.50
49 49 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
50 50 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.000 0 1.00
51 51 A 0 0 0 0 0 0 0 0 3 0 0 0 0 0 3 6 0 0 0 89 35 0 0 0.474 15 0.54
52 52 A 0 0 0 0 0 0 0 0 20 6 66 0 0 0 0 9 0 0 0 0 35 0 0 0.972 32 0.27
53 53 A 0 0 0 0 0 0 0 0 0 0 91 0 0 0 3 6 0 0 0 0 35 0 0 0.347 11 0.56
54 54 A 0 91 0 0 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.347 11 0.80
55 55 A 0 0 0 0 0 0 3 0 0 0 0 0 0 3 26 68 0 0 0 0 34 0 0 0.824 27 0.34
56 56 A 0 0 0 0 0 0 0 0 0 0 0 0 0 6 3 91 0 0 0 0 35 0 0 0.347 11 0.61
57 57 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 97 0 0 0 0 35 0 0 0.130 4 0.92
58 58 A 0 0 0 0 0 0 0 0 0 0 3 0 0 9 0 0 0 0 89 0 35 0 0 0.420 14 0.64
59 59 A 0 0 0 0 0 0 0 0 9 0 0 0 0 0 0 91 0 0 0 0 35 0 0 0.293 9 0.50
60 60 A 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 0 91 0 0 0 35 0 0 0.293 9 0.47
61 61 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 35 0 0 0.000 0 1.00
62 62 A 0 23 0 0 0 0 0 3 0 0 0 0 0 0 0 3 63 9 0 0 35 0 0 1.043 34 0.20
63 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 0 0 9 35 0 0 0.293 9 0.60
64 64 A 9 0 0 0 0 0 0 0 83 0 0 6 0 0 0 0 3 0 0 0 35 0 0 0.632 21 0.51
65 65 A 0 3 89 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.420 14 0.32
66 66 A 0 0 0 3 0 0 0 0 3 0 0 0 0 0 26 37 26 0 0 6 35 0 0 1.433 47 0.25
67 67 A 0 0 0 0 0 0 0 3 0 0 0 0 0 0 6 0 29 63 0 0 35 0 0 0.915 30 0.46
68 68 A 0 0 0 0 0 0 0 94 6 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.219 7 0.82
69 69 A 0 0 0 0 0 0 0 0 0 3 0 0 0 0 89 0 6 3 0 0 35 0 0 0.474 15 0.56
70 70 A 3 0 0 0 0 0 0 0 0 57 6 0 0 6 0 0 29 0 0 0 35 0 0 1.106 36 0.25
71 71 A 0 3 0 0 0 0 3 0 0 89 0 0 0 0 0 0 0 0 6 0 35 0 0 0.474 15 0.38
72 72 A 0 0 6 0 0 0 0 0 3 0 0 0 0 0 0 6 86 0 0 0 35 0 0 0.561 18 0.39
73 73 A 0 0 0 0 0 0 94 0 0 0 0 0 0 6 0 0 0 0 0 0 35 0 0 0.219 7 0.73
74 74 A 0 97 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 35 0 0 0.130 4 0.94
75 75 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
8 34 37 1 pVs
9 34 37 1 pVs
10 34 37 1 pVs
11 34 38 1 pVs
12 34 43 1 pVs
13 34 37 1 pVs
14 34 37 1 pVs
15 34 37 1 pVs
16 34 37 1 pVs
17 34 37 1 pVs
18 34 37 1 pVs
19 34 37 1 pVs
20 34 37 1 pVs
21 34 37 1 pVs
22 34 37 1 pVs
23 34 37 1 pVs
24 34 37 1 pVs
25 34 37 1 pVs
26 34 42 1 pVs
27 34 42 1 pVs
28 34 37 1 pVs
29 34 37 1 pVs
30 34 42 1 pVs
31 34 42 1 pVs
//