Complet list of 1tsk hssp file
Complete list of 1tsk.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TSK
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER NEUROTOXIN 05-FEB-97 1TSK
COMPND MOL_ID: 1; MOLECULE: TS KAPA; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: TITYUS SERRULATUS; ORGANISM_COMMON: BR
AUTHOR E.BLANC,H.DARBON
DBREF 1TSK A 1 35 UNP P56219 SCKK_TITSE 1 35
SEQLENGTH 35
NCHAIN 1 chain(s) in 1TSK data set
NALIGN 12
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : KAX42_TITSE 1TSK 1.00 1.00 1 35 23 57 35 0 0 57 P56219 Potassium channel toxin alpha-KTx 4.2 OS=Tityus serrulatus PE=1 SV=2
2 : KAX43_TITDI 0.54 0.69 1 35 1 35 35 0 0 37 P59925 Potassium channel toxin alpha-KTx 4.3 OS=Tityus discrepans PE=1 SV=1
3 : KAX44_TITOB 0.54 0.69 1 35 1 35 35 0 0 37 P60210 Potassium channel toxin alpha-KTx 4.4 OS=Tityus obscurus PE=1 SV=1
4 : KAX41_TITSE 1HP2 0.51 0.69 1 35 1 35 35 0 0 37 P46114 Potassium channel toxin alpha-KTx 4.1 OS=Tityus serrulatus PE=1 SV=1
5 : KAX46_TITST 0.51 0.71 1 35 1 35 35 0 0 37 P0CB56 Potassium channel toxin alpha-KTx 4.6 OS=Tityus stigmurus PE=1 SV=1
6 : KA165_LEIQH 0.50 0.68 2 35 2 35 34 0 0 36 P45660 Potassium channel toxin alpha-KTx 16.5 OS=Leiurus quinquestriatus hebraeus PE=1 SV=1
7 : KAX45_TITCO 0.49 0.69 1 35 23 57 35 0 0 59 Q5G8B6 Potassium channel toxin alpha-KTx 4.5 OS=Tityus costatus PE=1 SV=1
8 : KAX6D_HETSP 1V56 0.48 0.58 5 35 1 31 31 0 0 34 P84094 Potassium channel toxin alpha-KTx 6.13 OS=Heterometrus spinifer PE=1 SV=1
9 : KAX6F_HEMLE 0.48 0.61 5 35 1 31 31 0 0 35 P85528 Potassium channel toxin alpha-KTx 6.15 OS=Hemiscorpius lepturus PE=1 SV=1
10 : KA125_LYCMC 0.47 0.69 4 35 27 58 32 0 0 60 P0CH12 Potassium channel toxin alpha-KTx 12.5 OS=Lychas mucronatus PE=2 SV=1
11 : KA157_ANDAM 0.46 0.63 1 35 24 57 35 1 1 59 Q5K0E0 Potassium channel toxin alpha-KTx 15.7 OS=Androctonus amoreuxi GN=tx1 PE=1 SV=1
12 : KA159_LYCMC 0.46 0.71 1 35 24 58 35 0 0 60 D9U2A8 Potassium channel toxin alpha-KTx 15.9 OS=Lychas mucronatus PE=2 SV=1
## ALIGNMENTS 1 - 12
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A V 0 0 127 9 0 VVVVV V VV
2 2 A V E -A 34 0A 85 10 86 VFFFFLF QS
3 3 A I E -A 33 0A 49 10 38 IIIIIII TT
4 4 A G + 0 0 75 11 43 GNNNNDN DNN
5 5 A Q - 0 0 78 13 78 QVVAAVVIIIKK
6 6 A R - 0 0 198 13 24 RKKKKRKRKKKK
7 7 A a + 0 0 28 13 0 CCCCCCCCCCCC
8 8 A Y S S+ 0 0 185 12 99 YTRRRYRSTS.S
9 9 A R S S- 0 0 159 13 83 RGGGGDGGLSKN
10 10 A S S S+ 0 0 81 13 23 SSSSSSSSSSGT
11 11 A P + 0 0 42 13 70 PKKPPRPRKSGS
12 12 A D S S+ 0 0 62 13 53 DQEEEQEDDSSQ
13 13 A b S > S+ 0 0 5 13 0 CCCCCCCCCCCC
14 14 A Y H > S+ 0 0 101 13 62 YLLLLWLYYYAY
15 15 A S H > S+ 0 0 100 13 73 SPPPPIPSSESK
16 16 A A H > S+ 0 0 11 13 72 AAAKKAKPPPVT
17 17 A c H X>S+ 0 0 0 13 0 CCCCCCCCCCCC
18 18 A K H <5S+ 0 0 105 13 49 KKKKKKKMKRAE
19 19 A K H <5S+ 0 0 157 13 61 KAAEQKEKKGKK
20 20 A L H <5S- 0 0 104 13 82 LAAAAVAQEVEV
21 21 A V T <5S- 0 0 116 13 53 VVVIITITTTIV
22 22 A G S -B 32 0A 50 13 65 TMMMMQMIIMIM
30 30 A N T 3 S- 0 0 116 13 0 NNNNNNNNNNNN
31 31 A G T 3 S+ 0 0 40 13 52 GGGGGKGKRGGG
32 32 A R E < S- B 0 29A 133 13 56 RKKKKQKSNRRK
33 33 A b E -AB 3 28A 1 13 0 CCCCCCCCCCCC
34 34 A D E AB 2 27A 50 13 71 DKKKKRKKKTVI
35 35 A c 0 0 50 13 0 CCCCCCCCCCCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0.000 0 1.00
2 2 A 20 10 0 0 50 0 0 0 0 0 10 0 0 0 0 0 10 0 0 0 10 0 0 1.359 45 0.13
3 3 A 0 0 80 0 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 0 10 0 0 0.500 16 0.61
4 4 A 0 0 0 0 0 0 0 18 0 0 0 0 0 0 0 0 0 0 64 18 11 0 0 0.908 30 0.57
5 5 A 31 0 23 0 0 0 0 0 15 0 0 0 0 0 0 15 15 0 0 0 13 0 0 1.565 52 0.21
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 69 0 0 0 0 13 0 0 0.617 20 0.75
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 1 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 25 0 0 0 25 17 0 0 33 0 0 0 0 0 12 0 0 1.358 45 0.00
9 9 A 0 8 0 0 0 0 0 46 0 0 8 0 0 0 15 8 0 0 8 8 13 0 0 1.631 54 0.17
10 10 A 0 0 0 0 0 0 0 8 0 0 85 8 0 0 0 0 0 0 0 0 13 0 0 0.536 17 0.77
11 11 A 0 0 0 0 0 0 0 8 0 38 15 0 0 0 15 23 0 0 0 0 13 0 0 1.479 49 0.30
12 12 A 0 0 0 0 0 0 0 0 0 0 15 0 0 0 0 0 23 31 0 31 13 0 0 1.352 45 0.46
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
14 14 A 0 38 0 0 0 8 46 0 8 0 0 0 0 0 0 0 0 0 0 0 13 0 0 1.119 37 0.38
15 15 A 0 0 8 0 0 0 0 0 0 38 38 0 0 0 0 8 0 8 0 0 13 0 0 1.327 44 0.27
16 16 A 8 0 0 0 0 0 0 0 38 23 0 8 0 0 0 23 0 0 0 0 13 0 0 1.439 48 0.27
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
18 18 A 0 0 0 8 0 0 0 0 8 0 0 0 0 0 8 69 0 8 0 0 13 0 0 1.044 34 0.50
19 19 A 0 0 0 0 0 0 0 8 15 0 0 0 0 0 0 54 8 15 0 0 13 0 0 1.304 43 0.39
20 20 A 23 15 0 0 0 0 0 0 38 0 0 0 0 0 0 0 8 15 0 0 13 0 0 1.479 49 0.18
21 21 A 38 0 31 0 0 0 0 0 0 0 0 31 0 0 0 0 0 0 0 0 13 0 0 1.093 36 0.47
22 22 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
23 23 A 15 0 0 0 0 0 0 0 0 0 8 0 15 0 8 54 0 0 0 0 13 0 0 1.304 43 0.15
24 24 A 0 0 0 0 0 0 0 0 69 15 8 8 0 0 0 0 0 0 0 0 13 0 0 0.937 31 0.59
25 25 A 0 0 0 0 0 0 0 0 54 0 0 15 0 8 8 0 8 0 8 0 13 0 0 1.411 47 0.26
26 26 A 0 0 0 0 0 0 0 85 15 0 0 0 0 0 0 0 0 0 0 0 13 0 0 0.429 14 0.82
27 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 13 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
29 29 A 0 0 23 54 0 0 0 0 0 0 0 15 0 0 0 0 8 0 0 0 13 0 0 1.157 38 0.35
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 13 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 77 0 0 0 0 0 0 8 15 0 0 0 0 13 0 0 0.687 22 0.47
32 32 A 0 0 0 0 0 0 0 0 0 0 8 0 0 0 31 46 8 0 8 0 13 0 0 1.311 43 0.44
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
34 34 A 8 0 8 0 0 0 0 0 0 0 0 8 0 0 8 54 0 0 0 15 13 0 0 1.411 47 0.28
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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