Complet list of 1tr6 hssp file
Complete list of 1tr6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TR6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER TOXIN 21-JUN-04 1TR6
COMPND MOL_ID: 1; MOLECULE: OMEGA-CONOTOXIN GVIA; CHAIN: A; FRAGMENT: GVIA, G
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CONUS GEOGRAPHUS; ORGANISM_COMMON: GEO
AUTHOR J.MOULD,T.YASUDA,C.I.SCHROEDER,A.M.BEEDLE,C.J.DOERING,G.W.ZAMPONI, D.J
DBREF 1TR6 A 1 27 UNP P01522 CXO6_CONGE 46 72
SEQLENGTH 27
NCHAIN 1 chain(s) in 1TR6 data set
NALIGN 1
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CO16A_CONGE 1TR6 0.89 0.89 1 27 46 72 27 0 0 73 P01522 Omega-conotoxin GVIA OS=Conus geographus PE=1 SV=2
## ALIGNMENTS 1 - 1
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 93 2 0 C
2 2 A K B -a 15 0A 104 2 0 K
3 3 A S > - 0 0 72 2 0 S
4 4 A X T 3 S+ 0 0 124 1 0 P
5 5 A G T 3 S+ 0 0 31 2 0 G
6 6 A S < - 0 0 39 2 0 S
7 7 A S + 0 0 82 2 0 S
8 8 A b - 0 0 11 2 0 C
9 9 A S - 0 0 47 2 0 S
10 10 A K S S+ 0 0 124 2 93 P
11 11 A T S S+ 0 0 112 2 0 T
12 12 A S + 0 0 31 2 0 S
13 13 A Y + 0 0 182 2 0 Y
14 14 A N + 0 0 82 2 0 N
15 15 A c B -a 2 0A 15 2 0 C
16 16 A a S S+ 0 0 107 2 0 C
17 17 A R S S- 0 0 160 2 0 R
18 18 A S - 0 0 34 2 0 S
19 19 A b E -B 26 0B 20 2 0 C
20 20 A N E >> -B 25 0B 18 2 0 N
21 21 A X T 45S+ 0 0 58 1 0 P
22 22 A Y T 45S+ 0 0 193 2 0 Y
23 23 A T T 45S- 0 0 72 2 0 T
24 24 A K T <5S+ 0 0 99 2 0 K
25 25 A R E