Complet list of 1tpm hssp file
Complete list of 1tpm.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TPM
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER PLASMINOGEN ACTIVATOR 26-MAY-93 1TPM
COMPND MOL_ID: 1; MOLECULE: TISSUE-TYPE PLASMINOGEN ACTIVATOR; CHAIN: A; ENGI
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR A.K.DOWNING,P.C.DRISCOLL,T.S.HARVEY,T.J.DUDGEON,B.O.SMITH, M.BARON,I.D
DBREF 1TPM A 1 50 UNP P00750 TPA_HUMAN 36 85
SEQLENGTH 50
NCHAIN 1 chain(s) in 1TPM data set
NALIGN 68
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B4DN26_HUMAN 1.00 1.00 1 50 36 85 50 0 0 473 B4DN26 Tissue-type plasminogen activator chain A OS=Homo sapiens GN=PLAT PE=2 SV=1
2 : B4DNJ1_HUMAN 1.00 1.00 1 49 36 84 49 0 0 436 B4DNJ1 Tissue-type plasminogen activator chain A OS=Homo sapiens GN=PLAT PE=2 SV=1
3 : B4DRD3_HUMAN 1.00 1.00 10 50 3 43 41 0 0 520 B4DRD3 cDNA FLJ58123, highly similar to Tissue-type plasminogen activator (EC 3.4.21.68) OS=Homo sapiens PE=2 SV=1
4 : B4DV92_HUMAN 1.00 1.00 1 50 36 85 50 0 0 499 B4DV92 cDNA FLJ59440, highly similar to Tissue-type plasminogen activator (EC3.4.21.68) OS=Homo sapiens PE=2 SV=1
5 : B8ZX62_HUMAN 1.00 1.00 1 50 36 85 50 0 0 562 B8ZX62 Tissue plasminogen activator (Precursor) OS=Homo sapiens GN=PLAT PE=2 SV=1
6 : E5RGA1_HUMAN 1.00 1.00 1 50 36 85 50 0 0 178 E5RGA1 Tissue-type plasminogen activator chain A (Fragment) OS=Homo sapiens GN=PLAT PE=2 SV=1
7 : E5RHG4_HUMAN 1.00 1.00 1 50 36 85 50 0 0 157 E5RHG4 Tissue-type plasminogen activator chain A (Fragment) OS=Homo sapiens GN=PLAT PE=2 SV=1
8 : E7ESF4_HUMAN 1.00 1.00 1 50 36 85 50 0 0 499 E7ESF4 Tissue-type plasminogen activator chain A OS=Homo sapiens GN=PLAT PE=2 SV=1
9 : G1RQS0_NOMLE 1.00 1.00 1 50 36 85 50 0 0 562 G1RQS0 Uncharacterized protein OS=Nomascus leucogenys GN=PLAT PE=3 SV=1
10 : G3RMM0_GORGO 1.00 1.00 1 50 36 85 50 0 0 560 G3RMM0 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101140046 PE=3 SV=1
11 : G3S9D6_GORGO 1.00 1.00 1 50 36 85 50 0 0 561 G3S9D6 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101140046 PE=3 SV=1
12 : G7MZ73_MACMU 1.00 1.00 1 50 36 85 50 0 0 562 G7MZ73 Tissue-type plasminogen activator OS=Macaca mulatta GN=PLAT PE=2 SV=1
13 : H2QW33_PANTR 1.00 1.00 1 50 36 85 50 0 0 562 H2QW33 Plasminogen activator, tissue OS=Pan troglodytes GN=PLAT PE=2 SV=1
14 : H9FVV9_MACMU 1.00 1.00 1 50 36 85 50 0 0 562 H9FVV9 Tissue-type plasminogen activator isoform 1 preproprotein OS=Macaca mulatta GN=PLAT PE=2 SV=1
15 : K4DI88_HUMAN 1.00 1.00 1 50 36 85 50 0 0 293 K4DI88 Plasminogen activator, tissue, isoform CRA_a OS=Homo sapiens GN=PLAT PE=4 SV=1
16 : TPA_HUMAN 1PML 1.00 1.00 1 50 36 85 50 0 0 562 P00750 Tissue-type plasminogen activator OS=Homo sapiens GN=PLAT PE=1 SV=1
17 : G7PBR4_MACFA 0.98 1.00 1 50 36 85 50 0 0 562 G7PBR4 Tissue-type plasminogen activator OS=Macaca fascicularis GN=EGM_17275 PE=3 SV=1
18 : H2PQ69_PONAB 0.98 1.00 1 50 85 134 50 0 0 611 H2PQ69 Tissue-type plasminogen activator (Fragment) OS=Pongo abelii GN=PLAT PE=3 SV=2
19 : H2PQ70_PONAB 0.98 1.00 1 50 10 59 50 0 0 536 H2PQ70 Tissue-type plasminogen activator OS=Pongo abelii GN=PLAT PE=3 SV=2
20 : TPA_PONAB 0.98 1.00 1 50 36 85 50 0 0 562 Q5R8J0 Tissue-type plasminogen activator OS=Pongo abelii GN=PLAT PE=2 SV=1
21 : F7HV58_CALJA 0.93 1.00 10 50 2 42 41 0 0 520 F7HV58 Uncharacterized protein OS=Callithrix jacchus GN=PLAT PE=3 SV=1
22 : F6TUX3_CALJA 0.90 1.00 1 50 36 85 50 0 0 563 F6TUX3 Tissue-type plasminogen activator isoform 1 preproprotein OS=Callithrix jacchus GN=PLAT PE=2 SV=1
23 : F7HV90_CALJA 0.90 1.00 1 50 36 85 50 0 0 500 F7HV90 Uncharacterized protein OS=Callithrix jacchus GN=PLAT PE=3 SV=1
24 : F7HV91_CALJA 0.90 1.00 1 50 36 85 50 0 0 474 F7HV91 Uncharacterized protein OS=Callithrix jacchus GN=PLAT PE=3 SV=1
25 : F7HV92_CALJA 0.90 1.00 1 49 36 84 49 0 0 437 F7HV92 Uncharacterized protein OS=Callithrix jacchus GN=PLAT PE=3 SV=1
26 : F7HZZ4_CALJA 0.90 1.00 1 50 36 85 50 0 0 292 F7HZZ4 Uncharacterized protein OS=Callithrix jacchus GN=PLAT PE=4 SV=1
27 : I3ME10_SPETR 0.88 1.00 1 50 36 85 50 0 0 560 I3ME10 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=PLAT PE=3 SV=1
28 : F1SE20_PIG 0.84 0.94 1 50 36 85 50 0 0 562 F1SE20 Tissue-type plasminogen activator OS=Sus scrofa GN=PLAT PE=2 SV=1
29 : G1NWV8_MYOLU 0.84 0.96 1 50 37 86 50 0 0 564 G1NWV8 Uncharacterized protein OS=Myotis lucifugus GN=PLAT PE=3 SV=1
30 : G3T547_LOXAF 0.84 0.92 1 50 33 82 50 0 0 560 G3T547 Uncharacterized protein OS=Loxodonta africana GN=PLAT PE=3 SV=1
31 : L5KD52_PTEAL 0.84 0.98 1 50 55 104 50 0 0 582 L5KD52 Tissue-type plasminogen activator OS=Pteropus alecto GN=PAL_GLEAN10021539 PE=3 SV=1
32 : S7MD45_MYOBR 0.84 0.96 1 50 37 86 50 0 0 564 S7MD45 Tissue-type plasminogen activator OS=Myotis brandtii GN=D623_10030525 PE=3 SV=1
33 : TPA_PIG 0.84 0.94 1 50 36 85 50 0 0 562 Q8SQ23 Tissue-type plasminogen activator OS=Sus scrofa GN=PLAT PE=2 SV=1
34 : B6DMH3_CARPS 0.80 0.96 1 50 37 86 50 0 0 564 B6DMH3 Plasminogen activator (Fragment) OS=Carollia perspicillata GN=PLAT PE=2 SV=1
35 : F6UNX7_HORSE 0.80 0.96 1 50 39 88 50 0 0 566 F6UNX7 Uncharacterized protein OS=Equus caballus GN=PLAT PE=3 SV=1
36 : G5BT55_HETGA 0.80 0.96 1 50 33 82 50 0 0 560 G5BT55 Tissue-type plasminogen activator OS=Heterocephalus glaber GN=GW7_08530 PE=3 SV=1
37 : M3W0H5_FELCA 0.80 0.94 1 50 37 86 50 0 0 512 M3W0H5 Uncharacterized protein (Fragment) OS=Felis catus GN=PLAT PE=4 SV=1
38 : TPA_RAT 0.78 0.90 1 50 33 82 50 0 0 559 P19637 Tissue-type plasminogen activator OS=Rattus norvegicus GN=Plat PE=2 SV=2
39 : B6DMH4_DIPEC 0.76 0.90 1 48 36 84 49 1 1 563 B6DMH4 Plasminogen activator (Fragment) OS=Diphylla ecaudata GN=PLAT PE=2 SV=1
40 : D2H983_AILME 0.76 0.91 6 50 1 45 45 0 0 523 D2H983 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_006861 PE=3 SV=1
41 : H0W0Z7_CAVPO 0.76 0.92 1 50 37 86 50 0 0 563 H0W0Z7 Uncharacterized protein (Fragment) OS=Cavia porcellus GN=PLAT PE=3 SV=1
42 : T0NM94_9CETA 0.76 0.96 4 49 7 52 46 0 0 511 T0NM94 Tissue-type plasminogen activator OS=Camelus ferus GN=CB1_001095044 PE=3 SV=1
43 : TPA_MOUSE 0.76 0.86 1 50 33 82 50 0 0 559 P11214 Tissue-type plasminogen activator OS=Mus musculus GN=Plat PE=1 SV=3
44 : W5NYU0_SHEEP 0.76 0.92 1 50 36 85 50 0 0 565 W5NYU0 Uncharacterized protein OS=Ovis aries GN=PLAT PE=4 SV=1
45 : H0WS66_OTOGA 0.75 0.90 3 50 39 86 48 0 0 565 H0WS66 Uncharacterized protein OS=Otolemur garnettii GN=PLAT PE=3 SV=1
46 : F6WLY7_MONDO 0.74 0.90 1 50 32 81 50 0 0 562 F6WLY7 Uncharacterized protein OS=Monodelphis domestica GN=PLAT PE=3 SV=1
47 : G3WZE4_SARHA 0.74 0.93 5 50 39 84 46 0 0 565 G3WZE4 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=PLAT PE=3 SV=1
48 : L8I7B9_9CETA 0.74 0.92 1 50 37 86 50 0 0 566 L8I7B9 Tissue-type plasminogen activator OS=Bos mutus GN=M91_05778 PE=3 SV=1
49 : TPA_BOVIN 0.74 0.92 1 50 37 86 50 0 0 566 Q28198 Tissue-type plasminogen activator OS=Bos taurus GN=PLAT PE=2 SV=1
50 : G1LFI3_AILME 0.72 0.88 1 50 37 86 50 0 0 564 G1LFI3 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PLAT PE=3 SV=1
51 : URT2_DESRO 0.72 0.88 1 50 37 86 50 0 0 477 P15638 Salivary plasminogen activator alpha 2 OS=Desmodus rotundus PE=1 SV=2
52 : G3HHH6_CRIGR 0.71 0.90 3 50 238 285 48 0 0 675 G3HHH6 Salivary plasminogen activator alpha 2 OS=Cricetulus griseus GN=I79_010093 PE=3 SV=1
53 : L5LRW5_MYODS 0.71 0.90 3 50 39 86 48 0 0 564 L5LRW5 Tissue-type plasminogen activator OS=Myotis davidii GN=MDA_GLEAN10024892 PE=3 SV=1
54 : M3Y301_MUSPF 0.70 0.90 1 50 112 161 50 0 0 639 M3Y301 Uncharacterized protein OS=Mustela putorius furo GN=PLAT PE=3 SV=1
55 : U6D4Y3_NEOVI 0.70 0.90 1 50 128 177 50 0 0 396 U6D4Y3 Tissue-type plasminogen activator (Fragment) OS=Neovison vison GN=TPA PE=2 SV=1
56 : G9KH00_MUSPF 0.69 0.90 3 50 1 48 48 0 0 525 G9KH00 Plasminogen activator, tissue (Fragment) OS=Mustela putorius furo PE=2 SV=1
57 : B6DMH5_DIAYO 0.66 0.92 1 50 37 86 50 0 0 498 B6DMH5 Plasminogen activator (Fragment) OS=Diaemus youngi GN=PLAT PE=2 SV=1
58 : F1PWE1_CANFA 0.66 0.82 1 50 37 86 50 0 0 564 F1PWE1 Uncharacterized protein OS=Canis familiaris GN=PLAT PE=3 SV=2
59 : G1SYA6_RABIT 0.62 0.90 1 50 37 86 50 0 0 565 G1SYA6 Uncharacterized protein OS=Oryctolagus cuniculus GN=PLAT PE=3 SV=1
60 : Q8MKB1_RABIT 0.62 0.90 1 50 37 86 50 0 0 564 Q8MKB1 Tissue-type plasminogen activator OS=Oryctolagus cuniculus PE=2 SV=1
61 : U3KNE5_RABIT 0.62 0.90 1 50 57 106 50 0 0 584 U3KNE5 Uncharacterized protein OS=Oryctolagus cuniculus GN=PLAT PE=3 SV=1
62 : URT1_DESRO 1A5I 0.58 0.84 1 50 37 86 50 0 0 477 P98119 Salivary plasminogen activator alpha 1 OS=Desmodus rotundus PE=1 SV=1
63 : F6ZE17_ORNAN 0.51 0.77 4 50 65 109 47 1 2 595 F6ZE17 Uncharacterized protein OS=Ornithorhynchus anatinus GN=PLAT PE=3 SV=2
64 : H0Z4Z1_TAEGU 0.48 0.78 4 49 35 78 46 1 2 551 H0Z4Z1 Uncharacterized protein OS=Taeniopygia guttata GN=PLAT PE=3 SV=1
65 : K7FDZ7_PELSI 0.46 0.67 5 50 38 81 46 1 2 554 K7FDZ7 Uncharacterized protein OS=Pelodiscus sinensis GN=PLAT PE=3 SV=1
66 : V8NYC7_OPHHA 0.44 0.67 6 50 28 70 45 1 2 283 V8NYC7 Tissue-type plasminogen activator (Fragment) OS=Ophiophagus hannah GN=PLAT PE=4 SV=1
67 : H9GJ76_ANOCA 0.40 0.60 3 50 40 85 48 1 2 555 H9GJ76 Uncharacterized protein OS=Anolis carolinensis GN=PLAT PE=3 SV=1
68 : J9NXN6_CANFA 0.40 0.62 3 50 34 80 48 1 1 466 J9NXN6 Uncharacterized protein (Fragment) OS=Canis familiaris PE=4 SV=1
## ALIGNMENTS 1 - 68
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A S 0 0 149 54 18 SS SSSSSSSSSSSSSSSSS SSSSSSSSSSSSPSSSSA S SS S SSSA SS ASSSSA
2 2 A Y - 0 0 211 54 1 YY YYYYYYYYYYYYYYYYY YYYYYYYYYYYYYYYYYY Y YY Y YYYY YY YYFFFY
3 3 A Q + 0 0 167 60 54 QQ QQQQQQQQQQQQQQQQQ RRRRRRRRSRRRRRRRRG R RRQR KKRGKRRRRGRRRRG RR
4 4 A V + 0 0 56 63 28 VV VVVVVVVVVVVVVVVVV VVVVVVVVVVVVVVVVAV VLAVAV VVGVVAVVVVGVVVVVA VG
5 5 A I - 0 0 92 65 70 II IIIIIIIIIIIIIIIII LLLLLMTTTITTITTTTT TTTTTTVTTSATASSSTSTTTATVT LS
6 6 A a E -A 15 0A 2 67 0 CC CCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
7 7 A R E -A 14 0A 202 67 37 RR RRRRRRRRRRRRRRRRR RRRRRRRRRRRRRRRRRRRRRRRRKKRRRRRRRRRKRVVVKMTTRKR
8 8 A D E >>> -A 13 0A 12 67 0 DD DDDDDDDDDDDDDDDDD DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
9 9 A E T 345S+ 0 0 168 67 32 EE EEEEEEEEEEEEEEEEE EEEEEEEEEEEEEEEEEEEEEEEEEEGGEEEEEEEEEQQQEYNRPQE
10 10 A K T 345S- 0 0 130 69 44 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKKKPKKKKKKKKQKKKKKKQQQITSSYTK
11 11 A T T <45S- 0 0 55 69 13 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSSTTP
12 12 A Q T <5 + 0 0 162 69 21 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKTRKQP
13 13 A M E < -A 8 0A 103 69 57 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMTMTTMTMMMMMMTMTTTTTMTLLLMKEQQQT
14 14 A I E -A 7 0A 90 69 57 IIIIIIIIIIIIIIIIIIIIIIIIIIIITTTTITTTLTILTVTTVIITTLITTLLLTQTTTTVIIAVL
15 15 A Y E -A 6 0A 28 69 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYF
16 16 A Q > - 0 0 128 68 54 QQQQQQQQQQQQQQQQQQQQQQQQQQQQRLRRQRRQLQQVQQQLQQQRRVQQRLLLRGQQQRQQ.SQG
17 17 A Q T 3 S+ 0 0 82 68 38 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQQLQQQLQQQQQQHHQQQQPRRRRQH.WQP
18 18 A H T 3 S+ 0 0 124 69 53 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHNHHNHHHHHKKHHNQLHNNNQSRRRQRRQKRK
19 19 A Q < - 0 0 72 69 31 QQQQQQQQQQQQQQQQQQQQEEEEEEEQEEEEQEEEEQEEEEQEEQQDDEEQEEEEEEEEEEEGQEEE
20 20 A S E +B 35 0B 65 69 12 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSTRSSS
21 21 A W E -B 34 0B 12 69 9 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWEWWW
22 22 A L E -B 33 0B 76 68 6 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTLL.
23 23 A R E -B 32 0B 38 69 5 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRWRRP
24 24 A P - 0 0 93 69 30 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPHLLRQR
25 25 A V - 0 0 59 67 72 VVVVVVVVVVVVVVVVMVVVVVVVVVMLLVMMLMMLVMVGLLMLMGGLLGEMMGGGMGGGGE..RVAP
26 26 A L S S- 0 0 131 66 28 LLLLLLLLLLLLLLLLLLLLIIIIIILLLILLLLLLLLLLLLLLLLLLLLVLLLLLVLLLLV..L.NP
27 27 A R S S+ 0 0 242 68 10 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSM.RR
28 28 A S S S- 0 0 109 69 43 SSSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSGSGGSGSGAGSGGGSGGGSSSGGGGGGGGSGGGKRG
29 29 A N S S+ 0 0 107 69 35 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNRNNNNNKSNNNNNNNNNKASGEIN
30 30 A R - 0 0 131 69 19 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQRRRQQRRRRRRRGRRRRRQRRRER
31 31 A V E - C 0 46B 62 69 15 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVVVVVVVVVVVVVVVVVVVVVVVLIVTYV
32 32 A E E -BC 23 45B 43 69 8 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEECE
33 33 A Y E +BC 22 44B 81 69 37 YYYYYYYYYYYYYYYYYYYYYYYYYYYHYYYYHHYFYYHYFHYHYYFHHYHYHYYYYYYYYHYYYYRA
34 34 A b E +BC 21 43B 8 69 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
35 35 A W E -BC 20 42B 65 69 24 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWRRRWWRRWRRWWRRRWRRRRRRRRQRRARER
36 36 A a + 0 0 0 69 3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSC
37 37 A N S S- 0 0 65 69 56 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDDNNNEVNNNNDDDDDVDNNVVVDASSSDDNDERA
38 38 A S S S- 0 0 45 69 44 SSSSSSSSSSSSSSSSSSSSSSSSSSSDSSSSDSSGSSDGGGSGGSSGGGRGSGGGSGSSSRSSNNGG
39 39 A G S S+ 0 0 37 69 14 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGsGGGGGNGGGGGGGGGGGGGGGGGGGGSIG
40 40 A R S S- 0 0 171 68 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRQRRQRQRRRRLwRRQLRRFYRRRLSRRRRRRGGGQLRRG.R
41 41 A A - 0 0 26 68 54 AAAAAAAAAAAAAAAAAAAAAAAAAAPTSASSTAPPSAAPPPVAAITAAPATPPPPAPPPPAASSI.P
42 42 A Q E +C 35 0B 73 69 50 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQQQQQQQRRRQQQQQQHHHKQRRRRRRRFSR
43 43 A b E +C 34 0B 49 69 5 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
44 44 A H E -C 33 0B 76 69 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
45 45 A S E +C 32 0B 58 69 30 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSTSSSTSSSSTTTSAAP
46 46 A V E -C 31 0B 74 69 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
47 47 A P - 0 0 53 69 4 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPR
48 48 A V S S+ 0 0 111 69 11 VVVVVVVVVVVVVVVVVVVVIIIIIIIVVIVVVIVVVVIVVVVVVVVVVVVVVVVVIVVVVVGVVVVV
49 49 A K 0 0 190 68 43 KKKKKKKKKKKKKKKKKRRRKKKKKKKKRKKRKRKKRR KKRRRKQQRRKKRRRRRKRQQQNKRRRET
50 50 A S 0 0 182 64 26 S SSSSSSSSSSSSSSSSSSSSSS SSSSSGSSSGGSS SG SSSNSSSSSSGSSSSGSSSSA SAGG
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 7 2 91 0 0 0 0 0 0 0 0 0 54 0 0 0.355 11 0.81
2 2 A 0 0 0 0 6 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 54 0 0 0.215 7 0.99
3 3 A 0 0 0 0 0 0 0 7 0 0 2 0 0 0 52 5 35 0 0 0 60 0 0 1.107 36 0.45
4 4 A 86 2 0 0 0 0 0 5 8 0 0 0 0 0 0 0 0 0 0 0 63 0 0 0.544 18 0.72
5 5 A 3 9 34 2 0 0 0 0 5 0 9 38 0 0 0 0 0 0 0 0 65 0 0 1.487 49 0.30
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 67 0 0 0.000 0 1.00
7 7 A 4 0 0 1 0 0 0 0 0 0 0 3 0 0 84 7 0 0 0 0 67 0 0 0.650 21 0.63
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 67 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 1 3 0 1 0 0 0 0 1 0 6 85 1 0 67 0 0 0.662 22 0.67
10 10 A 0 0 1 0 0 0 1 0 0 1 3 3 0 0 0 83 7 0 0 0 69 0 0 0.737 24 0.56
11 11 A 0 0 0 0 0 0 0 0 0 1 3 96 0 0 0 0 0 0 0 0 69 0 0 0.207 6 0.87
12 12 A 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 3 93 0 0 0 69 0 0 0.357 11 0.78
13 13 A 0 4 0 71 0 0 0 0 0 0 0 17 0 0 0 1 4 1 0 0 69 0 0 0.943 31 0.42
14 14 A 6 10 52 0 0 0 0 0 1 0 0 29 0 0 0 0 1 0 0 0 69 0 0 1.218 40 0.43
15 15 A 0 0 0 0 1 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 69 1 0 0.076 2 1.00
16 16 A 3 9 0 0 0 0 0 3 0 0 1 0 0 0 15 0 69 0 0 0 68 0 0 1.021 34 0.45
17 17 A 0 3 0 0 0 1 0 0 0 3 0 0 0 6 6 0 81 0 0 0 68 0 0 0.774 25 0.62
18 18 A 0 1 0 0 0 0 0 0 0 0 1 0 0 68 9 6 6 0 9 0 69 0 0 1.139 38 0.46
19 19 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 42 54 0 3 69 0 0 0.862 28 0.68
20 20 A 0 0 0 0 0 0 0 0 0 0 96 3 0 0 1 0 0 0 0 0 69 0 0 0.207 6 0.88
21 21 A 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 1 0 0 69 1 0 0.076 2 0.90
22 22 A 0 99 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 68 0 0 0.077 2 0.94
23 23 A 0 0 0 0 0 1 0 0 0 1 0 0 0 0 97 0 0 0 0 0 69 0 0 0.151 5 0.95
24 24 A 0 3 0 0 0 0 0 0 0 91 0 0 0 1 3 0 1 0 0 0 69 2 0 0.411 13 0.70
25 25 A 45 13 0 18 0 0 0 16 1 1 0 0 0 0 1 0 0 3 0 0 67 1 0 1.527 50 0.28
26 26 A 5 82 11 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 66 0 0 0.670 22 0.72
27 27 A 0 0 0 1 0 0 0 0 0 0 1 0 0 0 97 0 0 0 0 0 68 0 0 0.153 5 0.90
28 28 A 0 0 0 0 0 0 0 36 1 0 59 0 0 0 1 1 0 0 0 0 69 0 0 0.861 28 0.56
29 29 A 0 0 1 0 0 0 0 1 1 0 4 0 0 0 1 3 0 1 86 0 69 0 0 0.680 22 0.65
30 30 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 91 0 6 1 0 0 69 0 0 0.371 12 0.80
31 31 A 93 3 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 69 0 0 0.357 11 0.84
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 69 0 0 0.076 2 0.92
33 33 A 0 0 0 0 4 0 77 0 1 0 0 0 0 16 1 0 0 0 0 0 69 0 0 0.754 25 0.62
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 69 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 64 0 0 1 0 0 0 0 0 32 0 1 1 0 0 69 0 0 0.835 27 0.75
36 36 A 0 0 0 0 0 0 0 0 0 0 1 0 99 0 0 0 0 0 0 0 69 0 0 0.076 2 0.97
37 37 A 7 0 0 0 0 0 0 0 3 0 4 0 0 0 1 0 0 3 64 17 69 0 0 1.184 39 0.43
38 38 A 0 0 0 0 0 0 0 23 0 0 67 0 0 0 3 0 0 0 3 4 69 0 0 0.951 31 0.56
39 39 A 0 0 1 0 0 0 0 94 0 0 3 0 0 0 0 0 0 0 1 0 69 1 1 0.282 9 0.85
40 40 A 0 6 0 0 1 1 1 6 0 0 1 0 0 0 75 0 7 0 0 0 68 0 0 0.989 33 0.44
41 41 A 1 0 3 0 0 0 0 0 57 24 9 6 0 0 0 0 0 0 0 0 68 0 0 1.206 40 0.45
42 42 A 0 1 0 0 1 0 0 0 0 0 1 0 0 4 16 1 74 0 0 0 69 0 0 0.898 29 0.50
43 43 A 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 0 0 0 0 0 69 0 0 0.076 2 0.95
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 69 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 3 1 87 9 0 0 0 0 0 0 0 0 69 0 0 0.498 16 0.70
46 46 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 69 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 0 0 0 99 0 0 0 0 1 0 0 0 0 0 69 0 0 0.076 2 0.95
48 48 A 83 0 16 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 69 0 0 0.512 17 0.89
49 49 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 32 56 7 1 1 0 68 0 0 1.068 35 0.56
50 50 A 0 0 0 0 0 0 0 13 3 0 83 0 0 0 0 0 0 0 2 0 64 0 0 0.589 19 0.74
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
39 40 75 1 sSw
//