Complet list of 1tl6 hssp file
Complete list of 1tl6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TL6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER TRANSCRIPTION 09-JUN-04 1TL6
COMPND MOL_ID: 1; MOLECULE: 10 KDA ANTI-SIGMA FACTOR; CHAIN: A; SYNONYM: AUDR
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; ORGANISM_TAXI
AUTHOR L.J.LAMBERT,Y.WEI,V.SCHIRF,B.DEMELER,M.H.WERNER
DBREF 1TL6 A 1 90 UNP P32267 ASIA_BPT4 1 90
SEQLENGTH 88
NCHAIN 1 chain(s) in 1TL6 data set
NALIGN 41
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : ASIA_BPT4 1JR5 1.00 1.00 1 88 2 89 88 0 0 90 P32267 10 kDa anti-sigma factor OS=Enterobacteria phage T4 GN=asiA PE=1 SV=1
2 : C3V1W0_9CAUD 1.00 1.00 1 88 2 89 88 0 0 90 C3V1W0 AsiA OS=Enterobacteria phage RB14 GN=asiA PE=4 SV=1
3 : D4ZA57_BPAR1 1.00 1.00 1 88 2 89 88 0 0 90 D4ZA57 Anti-sigma factor OS=Enterobacteria phage AR1 GN=asiA PE=4 SV=1
4 : D9IET9_BPT4 1.00 1.00 1 88 2 89 88 0 0 90 D9IET9 Anti-sigma 70 protein OS=Enterobacteria phage T4 GN=asiA PE=4 SV=1
5 : F2VXI6_9CAUD 1.00 1.00 1 88 2 89 88 0 0 90 F2VXI6 Putative uncharacterized protein OS=Shigella phage Shfl2 GN=Shfl2p255 PE=4 SV=1
6 : G1FHH2_9CAUD 1.00 1.00 1 88 2 89 88 0 0 90 G1FHH2 Anti-sigma 70 protein OS=Enterobacteria phage ime09 GN=asiA PE=4 SV=1
7 : I7AUC1_9VIRU 1.00 1.00 1 88 2 89 88 0 0 90 I7AUC1 Uncharacterized protein OS=Escherichia phage ECML-134 GN=ECML134_249 PE=4 SV=1
8 : K4FC50_9CAUD 1.00 1.00 1 88 2 89 88 0 0 90 K4FC50 Anti-sigma 70 protein OS=Enterobacteria phage vB_EcoM_ACG-C40 GN=ACG-C40_0251 PE=4 SV=1
9 : Q06E80_BPR32 1.00 1.00 1 88 2 89 88 0 0 90 Q06E80 AsiA OS=Enterobacteria phage RB32 GN=asiA PE=4 SV=1
10 : S5MRK7_9CAUD 1.00 1.00 1 88 2 89 88 0 0 90 S5MRK7 Anti-sigma 70 protein OS=Yersinia phage PST GN=asiA PE=4 SV=1
11 : C3V2N7_BPR51 0.99 0.99 1 88 2 89 88 0 0 90 C3V2N7 AsiA OS=Enterobacteria phage RB51 GN=asiA PE=4 SV=1
12 : G0X5A0_9CAUD 0.99 1.00 1 72 2 73 72 0 0 76 G0X5A0 Anti-sigma 70 protein OS=Escherichia phage wV7 PE=4 SV=1
13 : Q7Y4Q5_BPR69 0.74 0.91 1 88 2 89 88 0 0 90 Q7Y4Q5 AsiA anti-sigma 70 protein OS=Enterobacteria phage RB69 GN=asiA PE=4 SV=1
14 : I7J486_9CAUD 0.73 0.91 1 88 2 89 88 0 0 90 I7J486 Uncharacterized protein OS=Yersinia phage phiD1 GN=g257 PE=4 SV=1
15 : K0G7R3_9CAUD 0.73 0.91 1 88 2 89 88 0 0 90 K0G7R3 Uncharacterized protein OS=Enterobacteria phage HX01 GN=HX01_0196 PE=4 SV=1
16 : W6B2Y6_9CAUD 0.60 0.87 3 88 3 89 87 1 1 90 W6B2Y6 Anti-sigma 70 protein OS=Enterobacter phage PG7 GN=asiA PE=4 SV=1
17 : E5DHZ2_9CAUD 0.59 0.87 3 88 3 89 87 1 1 90 E5DHZ2 Anti-sigma 70 protein OS=Enterobacteria phage CC31 GN=asiA PE=4 SV=1
18 : K4I5W1_9CAUD 0.55 0.84 3 88 3 89 87 1 1 90 K4I5W1 Uncharacterized protein OS=Salmonella phage STML-198 PE=4 SV=1
19 : M1EAI1_9CAUD 0.55 0.84 3 88 3 89 87 1 1 90 M1EAI1 Anti-sigma 70 protein OS=Salmonella phage S16 PE=4 SV=1
20 : C4MZY9_9CAUD 0.51 0.76 3 88 3 89 87 1 1 91 C4MZY9 AsiA anti-sigma 70 protein OS=Enterobacteria phage JS10 GN=asiA PE=4 SV=1
21 : E5E4L6_9CAUD 0.51 0.75 4 88 3 87 85 0 0 92 E5E4L6 AsiA anti-sigma 70 protein OS=Acinetobacter phage Acj61 GN=asiA PE=4 SV=1
22 : D7RMQ1_9CAUD 0.49 0.76 3 88 8 94 87 1 1 96 D7RMQ1 AsiA anti-sigma 70 protein OS=Enterobacteria phage IME08 GN=asiA PE=4 SV=1
23 : E3SF69_9CAUD 0.49 0.75 3 88 3 89 87 1 1 91 E3SF69 Anti-sigma 70 protein OS=Shigella phage SP18 GN=asiA PE=4 SV=1
24 : E5FJ32_9CAUD 0.49 0.75 3 88 3 89 87 1 1 91 E5FJ32 AsiA anti-sigma 70 protein OS=Enterobacteria phage vB_EcoM-VR7 GN=asiA PE=4 SV=1
25 : G0YKD2_9CAUD 0.49 0.79 4 85 3 84 82 0 0 92 G0YKD2 Anti-sigma 70 protein OS=Acinetobacter phage ZZ1 GN=asiA PE=4 SV=2
26 : G3MUK2_9CAUD 0.49 0.76 3 88 3 89 87 1 1 91 G3MUK2 Anti-sigma 70 protein OS=Enterobacteria phage Bp7 GN=asiA PE=4 SV=1
27 : A8R9N6_9CAUD 0.48 0.75 3 88 3 89 87 1 1 91 A8R9N6 AsiA anti-sigma 70 protein OS=Enterobacteria phage JS98 GN=asiA PE=4 SV=1
28 : I7J414_9CAUD 0.47 0.72 3 88 3 89 87 1 1 89 I7J414 AsiA anti-sigma 70 protein OS=Yersinia phage phiR1-RT GN=g254 PE=4 SV=1
29 : E5EQ30_9CAUD 0.45 0.76 4 85 3 84 82 0 0 92 E5EQ30 AsiA anti-sigma 70 protein OS=Acinetobacter phage Acj9 GN=asiA PE=4 SV=1
30 : E5EZ20_9CAUD 0.43 0.69 4 86 2 85 84 1 1 91 E5EZ20 AsiA anti-sigma 70 protein OS=Acinetobacter phage Ac42 GN=asiA PE=4 SV=1
31 : D9I6I4_9CAUD 0.41 0.69 4 85 2 84 83 1 1 92 D9I6I4 AsiA anti-sigma 70 protein OS=Acinetobacter phage 133 GN=asiA PE=4 SV=1
32 : I6XM06_9CAUD 0.41 0.72 3 75 5 78 74 1 1 90 I6XM06 Anti-sigma70 protein OS=Aeromonas phage CC2 GN=asiA PE=4 SV=1
33 : J7I4K9_9CAUD 0.39 0.73 6 88 6 89 84 1 1 91 J7I4K9 Anti-sigma 70 protein OS=Stenotrophomonas phage IME13 PE=4 SV=1
34 : J7KLV4_9CAUD 0.39 0.72 7 88 7 89 83 1 1 91 J7KLV4 Anti-sigma 70 protein OS=Aeromonas phage Aes508 GN=asiA PE=4 SV=1
35 : I6ZVU0_9CAUD 0.38 0.73 6 88 6 89 84 1 1 91 I6ZVU0 Anti-sigma 70 protein OS=Aeromonas phage Aes516 GN=asiA PE=4 SV=1
36 : Q19CE8_9CAUD 0.38 0.73 6 88 6 89 84 1 1 91 Q19CE8 Host sigma70-binding protein OS=Aeromonas phage 25 GN=asiA PE=4 SV=1
37 : E5DRZ5_9CAUD 0.37 0.68 1 75 2 77 76 1 1 97 E5DRZ5 AsiA anti-sigma70 protein OS=Aeromonas phage 65 GN=asiA PE=4 SV=1
38 : I6YMP8_9CAUD 0.37 0.72 7 88 7 89 83 1 1 91 I6YMP8 Host sigma70-binding protein OS=Aeromonas phage Aes012 GN=asiA PE=4 SV=1
39 : Q56ED8_9CAUD 0.37 0.70 7 88 7 89 83 1 1 90 Q56ED8 AsiA OS=Aeromonas phage 31 GN=asiA PE=4 SV=1
40 : Q6U976_9CAUD 0.37 0.70 7 88 7 89 83 1 1 90 Q6U976 Anti-sigma 70 protein OS=Aeromonas phage 44RR2.8t GN=asiA PE=4 SV=1
41 : E1A2L6_9CAUD 0.36 0.67 1 74 2 77 76 2 2 97 E1A2L6 Anti-sigma 70 protein OS=Aeromonas phage phiAS5 GN=phiAS5_ORF0119 PE=4 SV=1
## ALIGNMENTS 1 - 41
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 A N 0 0 199 18 26 NNNNNNNNNNNNNNN S N
2 3 A K > - 0 0 95 18 56 KKKKKKKKKKKKKKK N A
3 4 A N H > S+ 0 0 40 30 56 NNNNNNNNNNNNDDDKKKKK KKK KKE K K K
4 5 A I H > S+ 0 0 7 35 38 IIIIIIIIIIIIIIIILFFIFIFFFIFLFYYV I L
5 6 A D H > S+ 0 0 53 35 24 DDDDDDDDDDDDEEEEEEEENEEEEEEEENEE E E
6 7 A T H X S+ 0 0 44 38 56 TTTTTTTTTTTTIIIIIVVITIIITIIITIVLT TTV L
7 8 A V H X S+ 0 0 14 42 33 VVVVVVVVVVVVVVVVVAAVLVVVLVVILLLMIIIILIIIV
8 9 A R H X S+ 0 0 84 42 64 RRRRRRRRRRRRRRRRRRRSASSSQSSRCAAKKKKKKKKKK
9 10 A E H X S+ 0 0 96 42 10 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEEEDEDDD
10 11 A I H X S+ 0 0 27 42 4 IIIIIIIIIIIIIIIIIVVIIIIIIIIIIIVIIIIIIIIII
11 12 A I H X S+ 0 0 57 42 25 IIIIIIIIIIIIIIIVVVVAIAVVIAVVVIIVIIIIVIIII
12 13 A T H X S+ 0 0 65 42 49 TTTTTTTTTTTTTTTTTTTTATTTATTTAAAASSSSASAAA
13 14 A V H X S+ 0 0 31 42 37 VVVVVVVVVVVVIIIVVIIIVIVVVIIIVTVTIIIITITTT
14 15 A A H X S+ 0 0 10 42 31 AAAAAAAAAAAAAAAAAAAVAVTTAVTVAAAAAAAAAAAAV
15 16 A S H X S+ 0 0 25 42 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
16 17 A I H X S+ 0 0 119 42 19 IIIIIIIIIIIIIIIVVLLIIIIIIIIIIIIIVVVVIVLLL
17 18 A L H <>S+ 0 0 32 42 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
18 19 A I H ><5S+ 0 0 9 42 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIIIII
19 20 A K H 3<5S- 0 0 118 42 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
20 21 A F T 3<5S+ 0 0 196 42 41 FFFFFFFFFFFFFFFFFFFTFTTTFTTTFFFYFFFFFFFFL
21 22 A S T < 5S+ 0 0 82 42 49 SSSSSSSSSSSSSSSGGGGDGDDDGDDDGGGGGGGGGGGGE
22 23 A R < + 0 0 124 42 81 RRRRRRRRRRRRRRRSSRRCFCRRHCRCHHYCCCCCRCCCV
23 24 A E >> + 0 0 64 42 14 EEEEEEEEEEEEEEEEEDDEDEEEDEEDDDDDEEEEDEEEE
24 25 A D H 3> S+ 0 0 108 42 12 DDDDDDDDDDDDDDDHHDDDDDDDDDDDDDEDDDDDDDDDg
25 26 A I H 34 S+ 0 0 11 42 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIi
26 27 A V H <4 S+ 0 0 27 42 40 VVVVVVVVVVVVVVVLLVVMLMTTLMTLLLLLLLLLLLLLL
27 28 A E H < S+ 0 0 143 42 54 EEEEEEEEEEEEEEEEEDDQEQMMEQMTEEEDNNNNDNNND
28 29 A N S >X S- 0 0 87 42 58 NNNNNNNNNNNNDDDKKKKRNRKKNRKSHNNTNNNNTNKKT
29 30 A R H 3> S+ 0 0 153 42 43 RRRRRRRRRRRRRRRRRRRRHRRRKRRRRQKQQQQQQQQQQ
30 31 A A H 3> S+ 0 0 46 42 69 AAAAAAAAAAAAAAAEEDDDNDDDADDDPRVSEEEEREEEQ
31 32 A N H <> S+ 0 0 82 42 89 NNNNNNNNNNNNNSSHHNNELEVVLEVGLTLGLLLLGLTTN
32 33 A F H >X S+ 0 0 32 42 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFL
33 34 A I H 3X S+ 0 0 27 42 12 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIVVVVVVVIVVVI
34 35 A A H 3X S+ 0 0 67 42 42 AAAAAAAAAAAAGGGAAAAAAAAAAAAAAAADSSSSDSSSD
35 36 A F H S+ 0 0 1 42 4 LLLLLLLLLLLLLLLLLIILLLLLLLLLLLLLLLLLLLLLL
37 38 A N H >X5S+ 0 0 20 42 4 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNN
38 39 A E H 3<5S+ 0 0 154 42 5 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETEEEE
39 40 A I T 3<5S- 0 0 98 42 48 IIIIIIIIIIIIIIIIITTLLLLLLLLALLLLLLLLALLLA
40 41 A G T <45S+ 0 0 57 42 21 GGGGGGGGGGGGGGGGGMMGEGGGGGGGGGKGGGGGGGGGG
41 42 A V << - 0 0 7 42 47 VVVVVVVVVVVVIIIIISSIIILLIILIIFIFLLLLFLFFF
42 43 A T + 0 0 102 42 67 TTTTTTTTTTMTKKKKKAARTRRRTRRRTKKTKKKKTKRRR
43 44 A H - 0 0 48 42 86 HHHHHHHHHHHHKKKnnddnInnnInnnVtstsssstssst
44 45 A E S S- 0 0 158 42 82 EEEEEEEEEEEEDDDllnnhQhnnGhnfNetrssssssttr
45 46 A G S S+ 0 0 81 42 23 GGGGGGGGGGGGGGGGGWWGGGGGNGGGAGGGGGGGGGGGG
46 47 A R S S- 0 0 173 42 66 RRRRRRRRRRRRRRRRRKKKKKNNKKNRRRAKEEEEKEEEL
47 48 A K - 0 0 155 42 67 KKKKKKKKKKKKQQQPPQQEKEEEKEETKPPPEEEDPEEEE
48 49 A L - 0 0 34 42 21 LLLLLLLLLLLLLLLLLLLLVLLLVLLLVIILFFFFLFFFF
49 50 A N > - 0 0 81 42 51 NNNNNNNNNNNNNNNNNNNNTNNNTNNNTTTTTTTTTTTTT
50 51 A Q G > S+ 0 0 127 42 81 QQQQQQQQQQQQQQQQQQQGSGNNAGNGSLVIRRRRIRRRK
51 52 A N G > S+ 0 0 123 42 87 NNNNNNNNNNNNNNNSSSSLALVVTLVAATHFAAAAQAAAM
52 53 A S G <> + 0 0 40 42 46 SSSSSSSSSSSSSSSNNSSSNSSSSSSNSNTNGGGGNGGGS
53 54 A F H <> S+ 0 0 139 42 6 FFFFFFFFFFFFFFFFFFFFLYFFLYFFLLLFFFFFFFFFF
54 55 A R H <> S+ 0 0 170 42 53 RRRRRRRRRRRRRRRRRRRNYNNNWNNKFFTRRRRRRRRRR
55 56 A K H 4 S+ 0 0 110 42 58 KKKKKKKKKKKKKKKKKKKKMKKKNKKKENTVQQQQVQQQQ
56 57 A I H < S+ 0 0 15 42 32 IIIIIIIIIIIILLLMMIILLLLLLLLLLMMMMMMMMMMMM
57 58 A V H >< S+ 0 0 74 42 65 VVVVVVVVVVVVIIIIIIIFTFFFTFFATTSVMMMMVMMMV
58 59 A S T 3< S+ 0 0 68 42 72 SSSSSSSSSSSSTTTEESSKQKKKQKKDQQESKKKKKKKKG
59 60 A E T 3 S+ 0 0 102 42 74 EEEEEEEEEEEENNNEEDDSESSSDSSGDDNSRRRRSRRRR
60 61 A L < - 0 0 38 42 13 LLLLLLLLLLLLLLLMMLLLILLLILLLIIILLLLLLLLLL
61 62 A T > - 0 0 72 42 45 TTTTTTTTTTTTTTTTTTTTTTSSTTSSTTTTPPPPKPPPT
62 63 A Q H > S+ 0 0 138 42 74 QQQQQQQQQQQQAAAAAAAETEEENEEVNTTQAAAAPAIID
63 64 A E H > S+ 0 0 142 42 49 EEEEEEEEEEEEEEEEEEEDSDDDRDDERRRYDDDDSDEEE
64 65 A D H > S+ 0 0 12 42 36 DDDDDDDDDDDDEEEEEEEEQEEEQEEEQEEQQQQQQQQQE
65 66 A K H X S+ 0 0 116 42 47 KKKKKKKKKKKKKKKKKKKRKRIIKRIKRKQKRRRRIRRRR
66 67 A K H X S+ 0 0 127 42 60 KKKKKKKKKKKKKKKQQGGDKEEEEDEEEDRKEEEEKEEEA
67 68 A T H X S+ 0 0 35 42 74 TTTTTTTTTTTTTTTQQMMTQTQQATQMQKQEEEEEEEEEE
68 69 A L H X S+ 0 0 40 42 14 LLLLLLLLLLLLLLLLLLLLLLIILLILLLLILLLLILLLV
69 70 A I H < S+ 0 0 61 42 16 IIIIIIIIIIIIIIIVVVVIIIIIIIIIIIIIVVVVFVIIL
70 71 A D H >< S+ 0 0 104 42 37 DDDDDDDDDDDDSSSEEEEEEEEEEEEESEDKEEEEEEEET
71 72 A E H 3< S+ 0 0 120 42 54 EEEEEEEEEEEEEEEEEEEQEQQQEQQEDEEEMMMMEMMME
72 73 A F T 3X S+ 0 0 105 42 0 FFFFFFFFFFFLFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
73 74 A N H <> S+ 0 0 78 41 24 NNNNNNNNNNN NNNNNNNNNNNNLNNNLNNDNNNNDNNNS
74 75 A E H > S+ 0 0 179 41 60 EEEEEEEEEEE EEEEEEEEMEEESEETVIIAQQQQAQQQA
75 76 A G H > S+ 0 0 29 40 0 GGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGG
76 77 A F H X S+ 0 0 64 38 60 FFFFFFFFFFF FFFFFFFYHYFFHYFYHHH HHHH HHH
77 78 A E H X S+ 0 0 106 38 41 EEEEEEEEEEE EEEEEEEEEEEEEEEEEEE RRRR RRR
78 79 A G H X S+ 0 0 24 38 56 GGGGGGGGGGG NNNSSDDDPDDDPDDDPPP DDDD DDD
79 80 A V H X S+ 0 0 40 38 17 VVVVVVVVVVV IIIVVIIIIIIIIIIIIIL VVII IVV
80 81 A Y H X S+ 0 0 91 38 60 YYYYYYYYYYY YYYYYYYHYHHHYHHYYYY NNNN NNN
81 82 A R H X S+ 0 0 179 38 27 RRRRRRRRRRR RRRRRRRRRRRRRRRRRRR HHHH HHH
82 83 A Y H X>S+ 0 0 21 38 88 YYYYYYYYYYY HHHYYHHYKYYYKYYYKKR QQQQ QQQ
83 84 A L H <5S+ 0 0 70 38 6 LLLLLLLLLLL LLLMMLLLLLLLLLLLLLL MMMM MMM
84 85 A E H <5S+ 0 0 144 38 82 EEEEEEEEEEE TAAMMTTMAMMMTMMEAEE AVII VMM
85 86 A M H <5S+ 0 0 123 38 4 MMMMMMMMMMM MMMMMMMMMMMMMMMFMLM MMMM MMM
86 87 A Y T <5S- 0 0 101 35 16 YYYYYYYYYYY YYYYYHHYYYYY YYF H YYYY YYY
87 88 A T < 0 0 85 34 33 TTTTTTTTTTT SSSSSTTTTTTT TTA TTTT TSS
88 89 A N 0 0 163 34 42 NNNNNNNNNNN NNNKKNNSNSSS SSR NNNN NNN
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 2 A 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 94 0 18 0 0 0.215 7 0.73
2 3 A 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 89 0 0 6 0 18 0 0 0.426 14 0.43
3 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43 0 3 43 10 30 0 0 1.068 35 0.44
4 5 A 3 9 60 0 23 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 1.120 37 0.62
5 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 6 37 35 0 0 0.851 28 0.75
6 7 A 11 5 34 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 38 0 0 1.105 36 0.43
7 8 A 60 14 19 2 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.137 37 0.66
8 9 A 0 0 0 0 0 0 0 0 7 0 14 0 2 0 50 24 2 0 0 0 42 0 0 1.333 44 0.35
9 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 0 14 42 0 0 0.410 13 0.90
10 11 A 7 0 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.257 8 0.96
11 12 A 26 0 67 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.810 27 0.75
12 13 A 0 0 0 0 0 0 0 0 24 0 12 64 0 0 0 0 0 0 0 0 42 0 0 0.879 29 0.50
13 14 A 50 0 36 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 42 0 0 0.992 33 0.62
14 15 A 12 0 0 0 0 0 0 0 81 0 0 7 0 0 0 0 0 0 0 0 42 0 0 0.613 20 0.68
15 16 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
16 17 A 17 12 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.792 26 0.81
17 18 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
18 19 A 0 0 98 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.94
19 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 42 0 0 0.000 0 1.00
20 21 A 0 2 0 0 79 0 2 0 0 0 0 17 0 0 0 0 0 0 0 0 42 0 0 0.666 22 0.59
21 22 A 0 0 0 0 0 0 0 43 0 0 38 0 0 0 0 0 0 2 0 17 42 0 0 1.118 37 0.51
22 23 A 2 0 0 0 2 0 2 0 0 0 5 0 29 7 52 0 0 0 0 0 42 0 0 1.297 43 0.18
23 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76 0 24 42 0 0 0.549 18 0.85
24 25 A 0 0 0 0 0 0 0 2 0 0 0 0 0 5 0 0 0 2 0 90 42 0 1 0.414 13 0.88
25 26 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
26 27 A 43 43 0 7 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 42 0 0 1.103 36 0.59
27 28 A 0 0 0 7 0 0 0 0 0 0 0 2 0 0 0 0 7 55 17 12 42 0 0 1.348 44 0.46
28 29 A 0 0 0 0 0 0 0 0 0 0 2 7 0 2 7 21 0 0 52 7 42 0 0 1.412 47 0.41
29 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 67 5 26 0 0 0 42 0 0 0.855 28 0.56
30 31 A 2 0 0 0 0 0 0 0 40 2 2 0 0 0 5 0 2 21 2 21 42 0 0 1.616 53 0.30
31 32 A 7 21 0 0 0 0 0 7 0 0 5 7 0 5 0 0 0 7 40 0 42 0 0 1.740 58 0.11
32 33 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.99
33 34 A 24 0 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.549 18 0.87
34 35 A 0 0 0 0 0 0 0 7 69 0 17 0 0 0 0 0 0 0 0 7 42 0 0 0.931 31 0.57
35 36 A 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 1.00
36 37 A 0 95 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.191 6 0.95
37 38 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 42 0 0 0.113 3 0.95
38 39 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 98 0 0 42 0 0 0.113 3 0.95
39 40 A 0 45 43 0 0 0 0 0 7 0 0 5 0 0 0 0 0 0 0 0 42 0 0 1.055 35 0.52
40 41 A 0 0 0 5 0 0 0 90 0 0 0 0 0 0 0 2 0 2 0 0 42 0 0 0.414 13 0.78
41 42 A 31 19 31 0 14 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 42 0 0 1.465 48 0.52
42 43 A 0 0 0 2 0 0 0 0 5 0 0 40 0 0 24 29 0 0 0 0 42 0 0 1.300 43 0.32
43 44 A 2 0 5 0 0 0 0 0 0 0 19 10 0 31 0 7 0 0 21 5 42 0 23 1.800 60 0.13
44 45 A 0 5 0 0 2 0 0 2 0 0 14 7 0 7 5 0 2 33 14 7 42 0 0 2.045 68 0.17
45 46 A 0 0 0 0 0 5 0 90 2 0 0 0 0 0 0 0 0 0 2 0 42 0 0 0.414 13 0.76
46 47 A 0 2 0 0 0 0 0 0 2 0 0 0 0 0 50 21 0 17 7 0 42 0 0 1.342 44 0.34
47 48 A 0 0 0 0 0 0 0 0 0 14 0 2 0 0 0 38 12 31 0 2 42 0 0 1.440 48 0.33
48 49 A 7 69 5 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.905 30 0.79
49 50 A 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0 0 0 0 64 0 42 0 0 0.652 21 0.48
50 51 A 2 2 5 0 0 0 0 10 2 0 5 0 0 0 17 2 48 0 7 0 42 0 0 1.710 57 0.18
51 52 A 7 7 0 2 2 0 0 0 24 0 10 5 0 2 0 0 2 0 38 0 42 0 0 1.811 60 0.12
52 53 A 0 0 0 0 0 0 0 17 0 0 64 2 0 0 0 0 0 0 17 0 42 0 0 0.970 32 0.53
53 54 A 0 12 0 0 83 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.550 18 0.93
54 55 A 0 0 0 0 5 2 2 0 0 0 0 2 0 0 71 2 0 0 14 0 42 0 0 1.019 34 0.47
55 56 A 5 0 0 2 0 0 0 0 0 0 0 2 0 0 0 64 19 2 5 0 42 0 0 1.157 38 0.42
56 57 A 0 31 36 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.097 36 0.68
57 58 A 38 0 17 17 14 0 0 0 2 0 2 10 0 0 0 0 0 0 0 0 42 0 0 1.645 54 0.34
58 59 A 0 0 0 0 0 0 0 2 0 0 38 7 0 0 0 33 10 7 0 2 42 0 0 1.513 50 0.28
59 60 A 0 0 0 0 0 0 0 2 0 0 19 0 0 0 19 0 0 38 10 12 42 0 0 1.566 52 0.26
60 61 A 0 83 12 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.550 18 0.86
61 62 A 0 0 0 0 0 0 0 0 0 17 10 71 0 0 0 2 0 0 0 0 42 0 0 0.852 28 0.54
62 63 A 2 0 5 0 0 0 0 0 29 2 0 7 0 0 0 0 33 14 5 2 42 0 0 1.748 58 0.25
63 64 A 0 0 0 0 0 0 2 0 0 0 5 0 0 0 10 0 0 57 0 26 42 0 0 1.129 37 0.51
64 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 40 0 31 42 0 0 1.087 36 0.64
65 66 A 0 0 10 0 0 0 0 0 0 0 0 0 0 0 29 60 2 0 0 0 42 0 0 0.980 32 0.53
66 67 A 0 0 0 0 0 0 0 5 2 0 0 0 0 0 2 45 5 33 0 7 42 0 0 1.381 46 0.39
67 68 A 0 0 0 7 0 0 0 0 2 0 0 45 0 0 0 2 19 24 0 0 42 0 0 1.383 46 0.25
68 69 A 2 86 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.474 15 0.86
69 70 A 21 2 74 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.732 24 0.84
70 71 A 0 0 0 0 0 0 0 0 0 0 10 2 0 0 0 2 0 52 0 33 42 0 0 1.107 36 0.62
71 72 A 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 14 67 0 2 42 0 0 0.936 31 0.46
72 73 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.99
73 74 A 0 5 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 88 5 41 0 0 0.499 16 0.75
74 75 A 2 0 5 2 0 0 0 0 7 0 2 2 0 0 0 0 17 61 0 0 41 0 0 1.304 43 0.40
75 76 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0.000 0 1.00
76 77 A 0 0 0 0 58 0 11 0 0 0 0 0 0 32 0 0 0 0 0 0 38 0 0 0.917 30 0.40
77 78 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 82 0 0 38 0 0 0.478 15 0.59
78 79 A 0 0 0 0 0 0 0 32 0 13 5 0 0 0 0 0 0 0 8 42 38 0 0 1.350 45 0.43
79 80 A 47 3 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.796 26 0.83
80 81 A 0 0 0 0 0 0 66 0 0 0 0 0 0 16 0 0 0 0 18 0 38 0 0 0.879 29 0.40
81 82 A 0 0 0 0 0 0 0 0 0 0 0 0 0 18 82 0 0 0 0 0 38 0 0 0.478 15 0.72
82 83 A 0 0 0 0 0 0 55 0 0 0 0 0 0 13 3 11 18 0 0 0 38 0 0 1.239 41 0.12
83 84 A 0 76 0 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.547 18 0.94
84 85 A 5 0 5 26 0 0 0 0 13 0 0 11 0 0 0 0 0 39 0 0 38 0 0 1.532 51 0.17
85 86 A 0 3 0 95 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.243 8 0.95
86 87 A 0 0 0 0 3 0 89 0 0 0 0 0 0 9 0 0 0 0 0 0 35 0 0 0.420 14 0.84
87 88 A 0 0 0 0 0 0 0 0 3 0 21 76 0 0 0 0 0 0 0 0 34 0 0 0.634 21 0.67
88 89 A 0 0 0 0 0 0 0 0 0 0 18 0 0 0 3 6 0 0 74 0 34 0 0 0.803 26 0.58
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
16 42 44 1 nDl
17 42 44 1 nDl
18 42 44 1 dKn
19 42 44 1 dKn
20 42 44 1 nEh
22 42 49 1 nEh
23 42 44 1 nEn
24 42 44 1 nEn
26 42 44 1 nEh
27 42 44 1 nEn
28 42 44 1 nEf
30 41 42 1 tVe
31 41 42 1 sHt
32 42 46 1 tVr
33 39 44 1 sPs
34 38 44 1 sPs
35 39 44 1 sPs
36 39 44 1 sPs
37 44 45 1 tPs
38 38 44 1 sPs
39 38 44 1 sPt
40 38 44 1 sPt
41 25 26 1 gEi
41 44 46 1 tVr
//