Complet list of 1tfi hssp file
Complete list of 1tfi.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TFI
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER TRANSCRIPTION REGULATION 27-APR-93 1TFI
COMPND MOL_ID: 1; MOLECULE: TRANSCRIPTIONAL ELONGATION FACTOR SII; CHAIN: A;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR X.QIAN,S.GOZANI,H.S.YOON,C.J.JEON,K.AGARWAL,M.A.WEISS
DBREF 1TFI A 1 50 UNP P23193 TCEA1_HUMAN 252 301
SEQLENGTH 50
NCHAIN 1 chain(s) in 1TFI data set
NALIGN 33
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B7Z4S1_HUMAN 1.00 1.00 1 50 68 117 50 0 0 117 B7Z4S1 Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=4 SV=1
2 : F6WLS6_CALJA 1.00 1.00 1 50 68 117 50 0 0 117 F6WLS6 Uncharacterized protein OS=Callithrix jacchus GN=TCEA1 PE=4 SV=1
3 : L9LA97_TUPCH 1.00 1.00 1 48 68 115 48 0 0 151 L9LA97 Transcription elongation factor A protein 1 (Fragment) OS=Tupaia chinensis GN=TREES_T100010530 PE=4 SV=1
4 : M7B1N7_CHEMY 1.00 1.00 1 48 25 72 48 0 0 102 M7B1N7 Transcription elongation factor A protein 1 OS=Chelonia mydas GN=UY3_11082 PE=4 SV=1
5 : Q4R8A5_MACFA 1.00 1.00 1 50 68 117 50 0 0 117 Q4R8A5 Testis cDNA clone: QtsA-12982, similar to human transcription elongation factor A (SII), 1 (TCEA1),transcript variant 2, OS=Macaca fascicularis PE=4 SV=1
6 : S9WKP8_9CETA 1.00 1.00 1 48 25 72 48 0 0 94 S9WKP8 Transcription elongation factor A protein 3-like isoform 2-like protein OS=Camelus ferus GN=CB1_001437034 PE=4 SV=1
7 : F7CPH0_MONDO 0.92 0.94 1 50 66 115 50 0 0 115 F7CPH0 Uncharacterized protein (Fragment) OS=Monodelphis domestica PE=4 SV=1
8 : L5LJJ5_MYODS 0.90 0.98 1 50 81 130 50 0 0 131 L5LJJ5 Transcription elongation factor A protein 2 OS=Myotis davidii GN=MDA_GLEAN10009514 PE=4 SV=1
9 : S4R3M9_HUMAN 0.90 0.94 1 48 26 73 48 0 0 78 S4R3M9 Transcription elongation factor A protein 3 (Fragment) OS=Homo sapiens GN=TCEA3 PE=4 SV=1
10 : S7NRC8_MYOBR 0.90 0.96 1 50 81 130 50 0 0 131 S7NRC8 Transcription elongation factor A protein 2 OS=Myotis brandtii GN=D623_10023429 PE=4 SV=1
11 : Q78CQ4_XENLA 0.88 0.94 1 50 72 121 50 0 0 121 Q78CQ4 Transcription elongation factor S-II (Fragment) OS=Xenopus laevis GN=TFIIS PE=4 SV=1
12 : E9J2T1_SOLIN 0.87 0.96 4 50 67 113 47 0 0 113 E9J2T1 Putative uncharacterized protein (Fragment) OS=Solenopsis invicta GN=SINV_06958 PE=4 SV=1
13 : T1GZZ8_MEGSC 0.85 0.96 4 50 33 79 47 0 0 79 T1GZZ8 Uncharacterized protein OS=Megaselia scalaris PE=4 SV=1
14 : A7XAK5_ARTSF 0.83 0.94 4 50 62 108 47 0 0 108 A7XAK5 Transcription elongation factor TFIIS (Fragment) OS=Artemia franciscana GN=TFIIS PE=2 SV=1
15 : H0ZL83_TAEGU 0.79 0.81 1 47 68 125 58 1 11 125 H0ZL83 Uncharacterized protein OS=Taeniopygia guttata GN=TCEA1 PE=4 SV=1
16 : H3G846_PHYRM 0.70 0.85 9 48 1 40 40 0 0 40 H3G846 Uncharacterized protein (Fragment) OS=Phytophthora ramorum GN=gwEuk.999.1.1 PE=4 SV=1
17 : R7QMC6_CHOCR 0.70 0.86 7 49 15 57 43 0 0 57 R7QMC6 Stackhouse genomic scaffold, scaffold_461 OS=Chondrus crispus GN=CHC_T00000183001 PE=4 SV=1
18 : R7QRE3_CHOCR 0.70 0.91 7 49 15 57 43 0 0 57 R7QRE3 Stackhouse genomic scaffold, scaffold_223 OS=Chondrus crispus GN=CHC_T00000828001 PE=4 SV=1
19 : C5LGP6_PERM5 0.69 0.86 9 50 37 78 42 0 0 78 C5LGP6 DNA-directed RNA polymerase subunit M, putative OS=Perkinsus marinus (strain ATCC 50983 / TXsc) GN=Pmar_PMAR023077 PE=4 SV=1
20 : S9XI24_9CETA 0.69 0.75 1 48 81 141 61 1 13 182 S9XI24 Uncharacterized protein OS=Camelus ferus GN=CB1_000220029 PE=4 SV=1
21 : R7QQF8_CHOCR 0.67 0.91 7 49 15 57 43 0 0 57 R7QQF8 Stackhouse genomic scaffold, scaffold_592 OS=Chondrus crispus GN=CHC_T00000726001 PE=4 SV=1
22 : D3BBQ9_POLPA 0.62 0.79 3 49 12 58 47 0 0 79 D3BBQ9 Uncharacterized protein OS=Polysphondylium pallidum GN=PPL_05928 PE=4 SV=1
23 : G5C8A8_HETGA 0.52 0.58 1 48 222 294 73 2 25 335 G5C8A8 Transcription elongation factor A protein 2 OS=Heterocephalus glaber GN=GW7_09708 PE=4 SV=1
24 : G5BHY9_HETGA 0.50 0.59 1 50 381 450 70 2 20 543 G5BHY9 Transcription elongation factor A protein 3 OS=Heterocephalus glaber GN=GW7_07499 PE=4 SV=1
25 : B2ATA0_PODAN 0.39 0.47 8 48 53 109 57 2 16 111 B2ATA0 DNA-directed RNA polymerase subunit OS=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) GN=PODANS_1_15160 PE=3 SV=1
26 : H2NPI1_PONAB 0.39 0.54 4 48 17 77 61 3 16 78 H2NPI1 DNA-directed RNA polymerase subunit OS=Pongo abelii GN=POLR3K PE=3 SV=1
27 : Q4CWD9_TRYCC 0.38 0.51 1 48 66 120 55 2 7 122 Q4CWD9 DNA-directed RNA polymerase subunit OS=Trypanosoma cruzi (strain CL Brener) GN=Tc00.1047053510029.40 PE=3 SV=1
28 : V5C1W2_TRYCR 0.38 0.51 1 48 66 120 55 2 7 122 V5C1W2 DNA-directed RNA polymerase subunit OS=Trypanosoma cruzi Dm28c GN=TCDM_14189 PE=3 SV=1
29 : I3EGC1_NEMP3 0.37 0.50 8 48 48 101 54 2 13 102 I3EGC1 DNA-directed RNA polymerase subunit OS=Nematocida parisii (strain ERTm3) GN=NEQG_01712 PE=3 SV=1
30 : I3EP58_NEMP1 0.37 0.50 8 48 48 101 54 2 13 102 I3EP58 DNA-directed RNA polymerase subunit OS=Nematocida parisii (strain ERTm1 / ATCC PRA-289) GN=NEPG_01238 PE=3 SV=1
31 : K1W5T7_MARBU 0.37 0.46 8 48 63 119 57 2 16 121 K1W5T7 DNA-directed RNA polymerase subunit OS=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) GN=MBM_09616 PE=3 SV=1
32 : B6AHL8_CRYMR 0.35 0.49 1 48 48 104 57 2 9 106 B6AHL8 DNA-directed RNA polymerase subunit OS=Cryptosporidium muris (strain RN66) GN=CMU_006360 PE=3 SV=1
33 : L8FSQ7_PSED2 0.35 0.53 1 48 61 117 57 2 9 120 L8FSQ7 DNA-directed RNA polymerase subunit OS=Pseudogymnoascus destructans (strain ATCC MYA-4855 / 20631-21) GN=GMDG_01264 PE=3 SV=1
## ALIGNMENTS 1 - 33
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A K 0 0 257 20 15 KKKKKKKRKRK K R RK KK KK
2 2 A T - 0 0 124 20 53 TTTTTTRTTTT T T TT NN PT
3 3 A G S S+ 0 0 70 21 45 GGGGGGGGGGG G G GGG EE EQ
4 4 A G - 0 0 33 25 38 GGGGGGGGGGGGGGG G DGG GEE EA
5 5 A T E -A 22 0A 87 25 69 TTTTTTTTTTTTTTT T HTT QVV AL
6 6 A Q E +A 21 0A 101 25 60 QQQQQQQQTQQKQQQ Q SQT RDD QT
7 7 A T - 0 0 36 28 47 TTTTTTTTTTTTTTT TT TTSTT CGG GA
8 8 A D + 0 0 58 32 21 DDDDDDDDDDDDDDD DD DDDDDDHGGEEDDD
9 9 A L + 0 0 81 34 38 LLLLLLLLLLLLLLLLMMMLMLLLLRQQLLVMV
10 10 A F S S- 0 0 52 34 32 FFFFFFFFFFLLLLFFFFFFFFFLFFLLIIFNV
11 11 A T - 0 0 64 34 78 TTTTTTTTQTQKKKTTKKQTKTTQGAIIEEGEQ
12 12 A C - 0 0 12 34 63 CCCCCCCCCCCCCCCCCCCCCCCCGCTTKKGID
13 13 A G S S+ 0 0 63 34 59 GGGGGGGSSNEGGGGGGGGGGPGSPNVVSSPAS
14 14 A K S S+ 0 0 133 34 36 KKKKKKKKKKKKKKKRKKKKKKKKDTRRKKDSK
15 15 A C S S- 0 0 34 34 42 CCCCCCCCCCCCCCCCCCCCCCCCACCCPPSAQ
16 16 A K + 0 0 168 34 50 KKKKKKKRKRKKKHKKKKRRKGrkwpqqkkwkr
17 17 A K S S- 0 0 101 34 61 KKKKKKRKKKKKKKKSHQKKQKsdkreennkme
18 18 A K S S+ 0 0 111 34 63 KKKKKKKKKKKRRRKSRRSKRRSKVKKKAAIAK
19 19 A N + 0 0 63 34 91 NNNNNNNNNNNNNNNKKKQNKKGTQPFFLLQVL
20 20 A C E - B 0 40A 0 34 15 CCCCCCCCCCCCCCCTCCTCCCCVCCCCCCCCC
21 21 A T E -AB 6 39A 5 34 59 TTTTTTTTTTSTTTtSTTTtTTpsspddppppp
22 22 A Y E -AB 5 38A 46 34 30 YYYYYYYYYYYYYYyNYYYaYYtdffyyyyfff
23 23 A T E - B 0 37A 44 34 91 TTTTTTTTNTNNNNTTYYFQYFCCFMVVYYFFS
24 24 A Q E + B 0 36A 88 34 18 QQQQQQQQQQQQQQRQQQQHQQKWQQQQQQQQQ
25 25 A V E - B 0 35A 70 34 45 VVVVVVVVVVVVLLVKMMMVMLVMVLIIMMMLA
26 26 A Q - 0 0 65 34 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
27 27 A T S S- 0 0 77 34 36 TTTTTTTTTTTTTTTTTTTTTTTTITMMTTIIT
28 28 A R S S+ 0 0 235 34 5 RRRRRRCRRRRRRRRRRRRRRRRRRRRRRRRRR
29 29 A S S S- 0 0 73 34 5 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSG
30 30 A A S S+ 0 0 65 34 18 AAAAAAASASAAAAAAAASSAASAAAAAAAAAA
31 31 A D S S+ 0 0 143 34 4 DDDDDDDDDDDDDDDDDDDDHDDDDDDDDDDDD
32 32 A E S S- 0 0 92 34 2 EEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEE
33 33 A P - 0 0 95 34 13 PPPPPPLPPPPPPPPPPPPPPPPPPPPPPPPPG
34 34 A M - 0 0 95 34 30 MMMMMMMMMMMMMMMMLLMMLLMMMMAAMMMMS
35 35 A T E -B 25 0A 23 34 5 TTTTTTTTTTTTTTTTKTTTTTTTTTTTTTTTT
36 36 A T E -B 24 0A 9 34 37 TTTTTTTTTTTTTTTVTTTTTTTTTTTTIIGSI
37 37 A F E -BC 23 48A 76 34 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
38 38 A V E -BC 22 47A 0 34 65 VVVVVVVVVVVVVVVVVVVVVVVVYYFFNNYYY
39 39 A V E -BC 21 46A 53 34 87 VVVVVVVVLVLLMLVMSSTVSTVLRKKKTTNTF
40 40 A C E -B 20 0A 2 34 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
41 41 A N S S+ 0 0 60 34 89 NNNNNNNNNNNNNNNHVVLNVVNNLCLLTTMVL
42 42 A E S S- 0 0 62 34 69 EEEEEEEEEEEEEEENHHNEHTEETnKKRRSKN
43 43 A C S S- 0 0 67 34 0 CCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCC
44 44 A G + 0 0 54 34 27 GGGGGGGGGGGGGGGGGGGGGNGGGGGGKKGEG
45 45 A N - 0 0 27 34 54 NNNNNNNNNNNNHHNNNNNNNNNHKHFFHHNHH
46 46 A R E +C 39 0A 198 34 47 RRRRRRRRRRRRRRRRRHKRHRRRNRQQTTRKR
47 47 A W E -C 38 0A 81 34 7 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWS
48 48 A K E +C 37 0A 114 33 29 KKKKKKKKKKKKKK KRRKKRIKKRRKKRRRKK
49 49 A F 0 0 131 17 31 FF F FV VFFFF FFF FY V
50 50 A C 0 0 90 13 0 CC C CC CCCCC C C
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 80 0 0 0 0 20 0 0 0.500 16 0.85
2 2 A 0 0 0 0 0 0 0 0 0 5 0 80 0 0 5 0 0 0 10 0 20 0 0 0.708 23 0.47
3 3 A 0 0 0 0 0 0 0 81 0 0 0 0 0 0 0 0 5 14 0 0 21 0 0 0.594 19 0.54
4 4 A 0 0 0 0 0 0 0 80 4 0 0 0 0 0 0 0 0 12 0 4 25 0 0 0.690 23 0.61
5 5 A 8 4 0 0 0 0 0 0 4 0 0 76 0 4 0 0 4 0 0 0 25 0 0 0.926 30 0.31
6 6 A 0 0 0 0 0 0 0 0 0 0 4 12 0 0 4 4 68 0 0 8 25 0 0 1.105 36 0.39
7 7 A 0 0 0 0 0 0 0 11 4 0 4 79 4 0 0 0 0 0 0 0 28 0 0 0.786 26 0.52
8 8 A 0 0 0 0 0 0 0 6 0 0 0 0 0 3 0 0 0 6 0 84 32 0 0 0.598 19 0.78
9 9 A 6 71 0 15 0 0 0 0 0 0 0 0 0 0 3 0 6 0 0 0 34 0 0 0.965 32 0.62
10 10 A 3 21 6 0 68 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 34 0 0 0.964 32 0.68
11 11 A 0 0 6 0 0 0 0 6 3 0 0 44 0 0 0 18 15 9 0 0 34 0 0 1.600 53 0.22
12 12 A 0 0 3 0 0 0 0 6 0 0 0 6 76 0 0 6 0 0 0 3 34 0 0 0.913 30 0.36
13 13 A 6 0 0 0 0 0 0 56 3 9 18 0 0 0 0 0 0 3 6 0 34 0 0 1.386 46 0.41
14 14 A 0 0 0 0 0 0 0 0 0 0 3 3 0 0 9 79 0 0 0 6 34 0 0 0.771 25 0.64
15 15 A 0 0 0 0 0 0 0 0 6 6 3 0 82 0 0 0 3 0 0 0 34 0 0 0.701 23 0.58
16 16 A 0 0 0 0 0 6 0 3 0 3 0 0 0 3 18 62 6 0 0 0 34 0 11 1.248 41 0.50
17 17 A 0 0 0 3 0 0 0 0 0 0 6 0 0 3 6 59 6 9 6 3 34 0 0 1.504 50 0.38
18 18 A 3 0 3 0 0 0 0 0 9 0 9 0 0 0 21 56 0 0 0 0 34 0 0 1.286 42 0.37
19 19 A 3 9 0 0 6 0 0 3 0 3 0 3 0 0 0 15 9 0 50 0 34 0 0 1.638 54 0.08
20 20 A 3 0 0 0 0 0 0 0 0 0 0 6 91 0 0 0 0 0 0 0 34 0 0 0.355 11 0.84
21 21 A 0 0 0 0 0 0 0 0 0 21 12 62 0 0 0 0 0 0 0 6 34 0 13 1.041 34 0.40
22 22 A 0 0 0 0 15 0 74 0 3 0 0 3 0 0 0 0 0 0 3 3 34 0 0 0.923 30 0.69
23 23 A 6 0 0 3 15 0 15 0 0 0 3 35 6 0 0 0 3 0 15 0 34 0 0 1.858 62 0.08
24 24 A 0 0 0 0 0 3 0 0 0 0 0 0 0 3 3 3 88 0 0 0 34 0 0 0.525 17 0.82
25 25 A 50 15 6 24 0 0 0 0 3 0 0 0 0 0 0 3 0 0 0 0 34 0 0 1.343 44 0.54
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 34 0 0 0.000 0 1.00
27 27 A 0 0 9 6 0 0 0 0 0 0 0 85 0 0 0 0 0 0 0 0 34 0 0 0.517 17 0.64
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 3 0 97 0 0 0 0 0 34 0 0 0.133 4 0.94
29 29 A 0 0 0 0 0 0 0 3 0 0 97 0 0 0 0 0 0 0 0 0 34 0 0 0.133 4 0.94
30 30 A 0 0 0 0 0 0 0 0 85 0 15 0 0 0 0 0 0 0 0 0 34 0 0 0.418 13 0.82
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 97 34 0 0 0.133 4 0.95
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 3 34 0 0 0.133 4 0.98
33 33 A 0 3 0 0 0 0 0 3 0 94 0 0 0 0 0 0 0 0 0 0 34 0 0 0.264 8 0.87
34 34 A 0 12 0 79 0 0 0 0 6 0 3 0 0 0 0 0 0 0 0 0 34 0 0 0.705 23 0.69
35 35 A 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 3 0 0 0 0 34 0 0 0.133 4 0.95
36 36 A 3 0 9 0 0 0 0 3 0 0 3 82 0 0 0 0 0 0 0 0 34 0 0 0.685 22 0.62
37 37 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 0 0 0.000 0 1.00
38 38 A 74 0 0 0 6 0 15 0 0 0 0 0 0 0 0 0 0 0 6 0 34 0 0 0.841 28 0.35
39 39 A 38 15 0 6 3 0 0 0 0 0 9 15 0 0 3 9 0 0 3 0 34 0 0 1.838 61 0.12
40 40 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 34 0 0 0.000 0 1.00
41 41 A 15 15 0 3 0 0 0 0 0 0 0 6 3 3 0 0 0 0 56 0 34 0 0 1.367 45 0.11
42 42 A 0 0 0 0 0 0 0 0 0 0 3 6 0 9 6 9 0 56 12 0 34 0 1 1.442 48 0.31
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 34 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 88 0 0 0 0 0 0 0 6 0 3 3 0 34 0 0 0.485 16 0.73
45 45 A 0 0 0 0 6 0 0 0 0 0 0 0 0 24 0 3 0 0 68 0 34 0 0 0.875 29 0.46
46 46 A 0 0 0 0 0 0 0 0 0 0 0 6 0 6 74 6 6 0 3 0 34 0 0 0.996 33 0.53
47 47 A 0 0 0 0 0 97 0 0 0 0 3 0 0 0 0 0 0 0 0 0 34 0 0 0.133 4 0.92
48 48 A 0 0 3 0 0 0 0 0 0 0 0 0 0 0 24 73 0 0 0 0 33 0 0 0.681 22 0.71
49 49 A 18 0 0 0 76 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.678 22 0.69
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 13 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
15 22 89 11 tYTQVLENYIYVy
20 22 102 13 tYTQVSPHCPQPMPa
23 17 238 15 rKKNCTYTQASGPWSIs
23 22 258 10 pHLCLARSHPYt
24 17 397 14 kKKNCTYNQVSLLASd
24 22 416 6 sHCVLLAd
25 10 62 6 wANAQKQk
25 15 73 10 sSAECSGGEAAf
26 14 30 6 pYVHNITr
26 19 41 8 pKCEHPRAYf
26 40 70 2 nAQc
27 17 82 2 qNDe
27 22 89 5 dGNRAHy
28 17 82 2 qNDe
28 22 89 5 dGDRAHy
29 10 57 5 kELPERn
29 15 67 8 pECSFTKANy
30 10 57 5 kELPERn
30 15 67 8 pECSFTKANy
31 10 72 6 wKNADKTk
31 15 83 10 pKNGCNGDEAAf
32 17 64 1 kVm
32 22 70 8 pKCSNTEAYf
33 17 77 1 rTe
33 22 83 8 pDCNKEELTf
//