Complet list of 1tcp hssp file
Complete list of 1tcp.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1TCP
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER BLOOD COAGULATION INHIBITOR 31-OCT-94 1TCP
COMPND MOL_ID: 1; MOLECULE: TICK ANTICOAGULANT PEPTIDE; CHAIN: A; ENGINEERED:
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ORNITHODOROS MOUBATA; ORGANISM_TAXID:
AUTHOR T.K.BRUNCK,M.S.L.LIM-WILBY
DBREF 1TCP A 1 60 UNP P17726 TAP_ORNMO 1 60
SEQLENGTH 60
NCHAIN 1 chain(s) in 1TCP data set
NALIGN 3
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TAP_ORNMO 1TAP 1.00 1.00 1 60 1 60 60 0 0 60 P17726 Tick anticoagulant peptide OS=Ornithodoros moubata PE=1 SV=1
2 : Q8I9U3_9ACAR 0.47 0.78 1 60 18 77 60 0 0 77 Q8I9U3 FXa inhibitor fXaI OS=Ornithodoros savignyi PE=4 SV=1
3 : O44121_9ACAR 0.42 0.76 6 60 1 55 55 0 0 55 O44121 Factor Xa inhibitor (Fragment) OS=Ornithodoros savignyi PE=2 SV=1
## ALIGNMENTS 1 - 3
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A Y 0 0 178 3 0 YY
2 2 A N - 0 0 79 3 0 NN
3 3 A R S > S+ 0 0 235 3 0 RR
4 4 A L G > S+ 0 0 82 3 0 LL
5 5 A a G 3 S+ 0 0 0 3 0 CC
6 6 A I G < S- 0 0 53 4 26 IVV
7 7 A K < - 0 0 56 4 0 KKK
8 8 A P - 0 0 83 4 0 PPP
9 9 A R S S+ 0 0 169 4 73 RQQ
10 10 A D S S+ 0 0 157 4 0 DDD
11 11 A W S S- 0 0 24 4 13 WFF
12 12 A I - 0 0 83 4 86 ITT
13 13 A D + 0 0 22 4 80 DKK
14 14 A E B +a 37 0A 131 4 53 EQQ
15 15 A b - 0 0 8 4 0 CCC
16 16 A D > - 0 0 82 4 86 DSS
17 17 A S H > S+ 0 0 79 4 86 SDD
18 18 A N H 4 S+ 0 0 167 4 53 NDD
19 19 A E H 4 S- 0 0 148 4 0 EEE
20 20 A G H < - 0 0 8 4 53 GDD
21 21 A G < + 0 0 45 4 53 GAA
22 22 A E - 0 0 30 4 113 EVV
23 23 A R E +B 37 0A 94 4 46 RKK
24 24 A A E -B 36 0A 0 4 86 AVV
25 25 A Y E +B 35 0A 40 4 6 YFF
26 26 A F E -B 34 0A 3 4 0 FFF
27 27 A R E -B 33 0A 60 4 80 RPP
28 28 A N - 0 0 67 4 66 NHH
29 29 A G S S+ 0 0 34 4 53 GDD
30 30 A K S S- 0 0 182 4 0 KKK
31 31 A G S S+ 0 0 31 4 106 GKK
32 32 A G - 0 0 7 4 60 GSS
33 33 A c E - B 0 27A 9 4 0 CCC
34 34 A D E - B 0 26A 78 4 33 DEE
35 35 A S E - B 0 25A 35 4 73 SPP
36 36 A F E - B 0 24A 58 4 0 FFF
37 37 A W E -aB 14 23A 72 4 0 WWW
38 38 A I - 0 0 0 4 0 III
39 39 A b >> - 0 0 17 4 0 CCC
40 40 A P T 34 S+ 0 0 89 4 0 PPP
41 41 A E T 34 S+ 0 0 138 4 0 EEE
42 42 A D T <4 S+ 0 0 60 4 33 DEE
43 43 A H S < S- 0 0 22 4 73 HDD
44 44 A T > - 0 0 107 4 86 TNN
45 45 A G T 3 S+ 0 0 83 4 0 GGG
46 46 A A T 3 S- 0 0 65 4 86 AVV
47 47 A D < - 0 0 68 4 0 DDD
48 48 A Y - 0 0 51 4 0 YYY
49 49 A Y - 0 0 57 4 0 YYY
50 50 A S + 0 0 56 4 0 SSS
51 51 A S S > S- 0 0 33 4 80 STT
52 52 A Y H > S+ 0 0 106 4 140 YKK
53 53 A R H > S+ 0 0 152 4 100 REE
54 54 A D H > S+ 0 0 94 4 0 DDD
55 55 A c H X>S+ 0 0 0 4 0 CCC
56 56 A F H <5S+ 0 0 57 4 19 FLL
57 57 A N H <5S+ 0 0 105 4 80 NSS
58 58 A A H <5S+ 0 0 14 4 0 AAA
59 59 A a T <5 0 0 2 4 0 CCC
60 60 A I < 0 0 87 4 53 IFF
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 3 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 3 0 0 0.000 0 1.00
4 4 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 3 0 0 0.000 0 1.00
6 6 A 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.73
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 0 0 0 4 0 0 0.693 23 0.27
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
11 11 A 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.87
12 12 A 0 0 50 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.13
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 50 4 0 0 0.693 23 0.20
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 4 0 0 0.693 23 0.47
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 4 0 0 0.693 23 0.13
17 17 A 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 4 0 0 0.693 23 0.13
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 4 0 0 0.693 23 0.47
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 4 0 0 0.693 23 0.47
21 21 A 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.47
22 22 A 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 4 0 0 0.693 23 -0.13
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 4 0 0 0.693 23 0.53
24 24 A 50 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.13
25 25 A 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.93
26 26 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 0 50 0 0 0 0 50 0 0 0 0 0 4 0 0 0.693 23 0.20
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 50 0 4 0 0 0.693 23 0.33
29 29 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 50 4 0 0 0.693 23 0.47
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 4 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 50 0 0 0 0 4 0 0 0.693 23 -0.07
32 32 A 0 0 0 0 0 0 0 50 0 0 50 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.40
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 4 0 0 0.693 23 0.67
35 35 A 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.27
36 36 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
37 37 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
38 38 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
40 40 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 4 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 50 4 0 0 0.693 23 0.67
43 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 50 4 0 0 0.693 23 0.27
44 44 A 0 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 50 0 4 0 0 0.693 23 0.13
45 45 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
46 46 A 50 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.13
47 47 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
48 48 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
49 49 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
51 51 A 0 0 0 0 0 0 0 0 0 0 50 50 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.20
52 52 A 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 0 0 0 0 4 0 0 0.693 23 -0.40
53 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 50 0 0 4 0 0 0.693 23 0.00
54 54 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 4 0 0 0.000 0 1.00
55 55 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
56 56 A 0 50 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.80
57 57 A 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 50 0 4 0 0 0.693 23 0.20
58 58 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
59 59 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 4 0 0 0.000 0 1.00
60 60 A 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.693 23 0.47
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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