Complet list of 1t5q hssp file
Complete list of 1t5q.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1T5Q
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER HORMONE/GROWTH FACTOR 05-MAY-04 1T5Q
COMPND MOL_ID: 1; MOLECULE: GASTRIC INHIBITORY POLYPEPTIDE; CHAIN: A; FRAGMEN
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY S
AUTHOR I.ALANA,C.M.HEWAGE,J.P.G.MALTHOUSE,J.C.PARKER,V.A.GAULT, F.P.M.O'HARTE
DBREF 1T5Q A 1 30 UNP P09681 GIP_HUMAN 52 81
SEQLENGTH 30
NCHAIN 1 chain(s) in 1T5Q data set
NALIGN 77
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F7CST3_CALJA 1.00 1.00 1 30 52 81 30 0 0 153 F7CST3 Uncharacterized protein OS=Callithrix jacchus GN=GIP PE=3 SV=1
2 : F7FHN3_CALJA 1.00 1.00 1 30 52 81 30 0 0 152 F7FHN3 Uncharacterized protein OS=Callithrix jacchus GN=GIP PE=3 SV=1
3 : F7GY24_MACMU 1.00 1.00 1 30 52 81 30 0 0 153 F7GY24 Uncharacterized protein OS=Macaca mulatta GN=GIP PE=3 SV=1
4 : G1QQZ6_NOMLE 1.00 1.00 1 30 52 81 30 0 0 153 G1QQZ6 Uncharacterized protein OS=Nomascus leucogenys GN=GIP PE=3 SV=1
5 : G3RDA9_GORGO 1.00 1.00 1 30 52 81 30 0 0 153 G3RDA9 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132288 PE=3 SV=1
6 : G3SCT1_GORGO 1.00 1.00 1 30 52 81 30 0 0 153 G3SCT1 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132288 PE=3 SV=1
7 : G7NHE2_MACMU 1.00 1.00 1 30 52 81 30 0 0 151 G7NHE2 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_08492 PE=3 SV=1
8 : G7PU86_MACFA 1.00 1.00 1 30 52 81 30 0 0 151 G7PU86 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_07681 PE=3 SV=1
9 : GIP_HUMAN 1T5Q 1.00 1.00 1 30 52 81 30 0 0 153 P09681 Gastric inhibitory polypeptide OS=Homo sapiens GN=GIP PE=1 SV=1
10 : H2NVK0_PONAB 1.00 1.00 1 30 23 52 30 0 0 124 H2NVK0 Uncharacterized protein (Fragment) OS=Pongo abelii GN=GIP PE=3 SV=1
11 : H2QDC7_PANTR 1.00 1.00 1 30 52 81 30 0 0 153 H2QDC7 Uncharacterized protein OS=Pan troglodytes GN=GIP PE=3 SV=1
12 : I3M3G3_SPETR 1.00 1.00 1 30 44 73 30 0 0 142 I3M3G3 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=GIP PE=3 SV=1
13 : D2H576_AILME 0.97 1.00 1 30 20 49 30 0 0 54 D2H576 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_005025 PE=3 SV=1
14 : E2RTE2_CANFA 0.97 1.00 1 30 44 73 30 0 0 144 E2RTE2 Uncharacterized protein OS=Canis familiaris GN=LOC100856162 PE=3 SV=1
15 : F1MQC0_BOVIN 0.97 1.00 1 30 46 75 30 0 0 146 F1MQC0 Gastric inhibitory polypeptide OS=Bos taurus GN=GIP PE=3 SV=1
16 : G1LEN0_AILME 0.97 1.00 1 30 44 73 30 0 0 144 G1LEN0 Uncharacterized protein OS=Ailuropoda melanoleuca GN=GIP PE=3 SV=1
17 : G1SLR3_RABIT 0.97 1.00 1 30 44 73 30 0 0 145 G1SLR3 Uncharacterized protein OS=Oryctolagus cuniculus GN=GIP PE=3 SV=1
18 : G3SUF9_LOXAF 0.97 1.00 1 30 44 73 30 0 0 144 G3SUF9 Uncharacterized protein OS=Loxodonta africana GN=GIP PE=3 SV=1
19 : G5C4N3_HETGA 0.97 1.00 1 30 42 71 30 0 0 136 G5C4N3 Gastric inhibitory polypeptide (Fragment) OS=Heterocephalus glaber GN=GW7_21751 PE=3 SV=1
20 : GIP_BOVIN 0.97 1.00 1 30 1 30 30 0 0 42 P09680 Gastric inhibitory polypeptide OS=Bos taurus GN=GIP PE=1 SV=1
21 : GIP_PIG 0.97 1.00 1 30 1 30 30 0 0 42 P01281 Gastric inhibitory polypeptide OS=Sus scrofa GN=GIP PE=1 SV=1
22 : GIP_RAT 0.97 1.00 1 30 44 73 30 0 0 144 Q06145 Gastric inhibitory polypeptide OS=Rattus norvegicus GN=Gip PE=2 SV=2
23 : H0W5W9_CAVPO 0.97 1.00 1 30 43 72 30 0 0 138 H0W5W9 Uncharacterized protein OS=Cavia porcellus GN=GIP PE=3 SV=1
24 : H0X206_OTOGA 0.97 1.00 1 30 52 81 30 0 0 150 H0X206 Uncharacterized protein OS=Otolemur garnettii GN=GIP PE=3 SV=1
25 : I3LI45_PIG 0.97 1.00 1 30 41 70 30 0 0 82 I3LI45 Uncharacterized protein OS=Sus scrofa GN=LOC100621117 PE=3 SV=1
26 : I3RLE6_PIG 0.97 1.00 1 30 44 73 30 0 0 144 I3RLE6 Gastric inhibitory polypeptide OS=Sus scrofa GN=GIP PE=2 SV=1
27 : L5JQD8_PTEAL 0.97 1.00 1 30 40 69 30 0 0 138 L5JQD8 Gastric inhibitory polypeptide OS=Pteropus alecto GN=PAL_GLEAN10019694 PE=3 SV=1
28 : L8IV68_9CETA 0.97 1.00 1 30 46 75 30 0 0 146 L8IV68 Gastric inhibitory polypeptide (Fragment) OS=Bos mutus GN=M91_15622 PE=3 SV=1
29 : L8Y5N4_TUPCH 0.97 1.00 1 30 44 73 30 0 0 176 L8Y5N4 Gastric inhibitory polypeptide OS=Tupaia chinensis GN=TREES_T100015364 PE=3 SV=1
30 : M3WAI1_FELCA 0.97 1.00 1 30 44 73 30 0 0 145 M3WAI1 Uncharacterized protein OS=Felis catus GN=GIP PE=3 SV=1
31 : M3YV87_MUSPF 0.97 1.00 1 30 44 73 30 0 0 144 M3YV87 Uncharacterized protein OS=Mustela putorius furo GN=GIP PE=3 SV=1
32 : S9X9V9_9CETA 0.97 1.00 1 30 44 73 30 0 0 78 S9X9V9 Uncharacterized protein OS=Camelus ferus GN=CB1_000261070 PE=3 SV=1
33 : W5P9D2_SHEEP 0.97 1.00 1 30 46 75 30 0 0 146 W5P9D2 Uncharacterized protein OS=Ovis aries GN=GIP PE=4 SV=1
34 : K0J610_CANFA 0.96 1.00 3 27 1 25 25 0 0 25 K0J610 Gastric inhibitory polypeptide (Fragment) OS=Canis familiaris GN=GIP PE=2 SV=1
35 : G1PJ19_MYOLU 0.93 1.00 1 30 43 72 30 0 0 143 G1PJ19 Uncharacterized protein OS=Myotis lucifugus GN=GIP PE=3 SV=1
36 : G3HJN5_CRIGR 0.93 1.00 1 30 44 73 30 0 0 205 G3HJN5 Gastric inhibitory polypeptide OS=Cricetulus griseus GN=I79_010883 PE=3 SV=1
37 : GIP_MOUSE 0.93 1.00 1 30 44 73 30 0 0 144 P48756 Gastric inhibitory polypeptide OS=Mus musculus GN=Gip PE=2 SV=2
38 : Q3SXG6_MOUSE 0.93 1.00 1 30 44 73 30 0 0 144 Q3SXG6 Gastric inhibitory polypeptide OS=Mus musculus GN=Gip PE=2 SV=1
39 : Q9CVF1_MOUSE 0.93 1.00 1 30 30 59 30 0 0 130 Q9CVF1 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Gip PE=2 SV=1
40 : S7MWG4_MYOBR 0.93 1.00 1 30 43 72 30 0 0 101 S7MWG4 Gastric inhibitory polypeptide OS=Myotis brandtii GN=D623_10017029 PE=3 SV=1
41 : G3WME3_SARHA 0.90 0.97 1 30 44 73 30 0 0 78 G3WME3 Uncharacterized protein OS=Sarcophilus harrisii GN=GIP PE=3 SV=1
42 : K7E4A9_MONDO 0.90 0.97 1 30 45 74 30 0 0 144 K7E4A9 Uncharacterized protein OS=Monodelphis domestica GN=GIP PE=3 SV=1
43 : S7PG72_MYOBR 0.57 0.77 1 30 45 74 30 0 0 111 S7PG72 Glucagon OS=Myotis brandtii GN=D623_10000911 PE=3 SV=1
44 : GLUC_SCYCA 0.55 0.79 2 30 2 30 29 0 0 62 P09687 Glucagon (Fragments) OS=Scyliorhinus canicula GN=gcg PE=1 SV=2
45 : M7BLE3_CHEMY 0.54 0.75 3 30 1459 1486 28 0 0 1581 M7BLE3 Interferon-induced helicase C domain-containing protein 1 OS=Chelonia mydas GN=UY3_04040 PE=3 SV=1
46 : D2HQW4_AILME 0.52 0.76 2 30 54 82 29 0 0 179 D2HQW4 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_014319 PE=3 SV=1
47 : F7F3N7_MONDO 0.52 0.76 2 30 55 83 29 0 0 181 F7F3N7 Uncharacterized protein OS=Monodelphis domestica GN=GCG PE=3 SV=2
48 : G1LG74_AILME 0.52 0.76 2 30 56 84 29 0 0 207 G1LG74 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=GCG PE=3 SV=1
49 : G1QG18_MYOLU 0.52 0.76 2 30 54 82 29 0 0 178 G1QG18 Uncharacterized protein OS=Myotis lucifugus PE=3 SV=1
50 : G3QHC4_GORGO 0.52 0.76 2 30 57 85 29 0 0 183 G3QHC4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101141703 PE=3 SV=1
51 : G3SE96_GORGO 0.52 0.76 2 30 54 82 29 0 0 180 G3SE96 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101141703 PE=3 SV=1
52 : G3WZV6_SARHA 0.52 0.76 2 30 53 81 29 0 0 179 G3WZV6 Uncharacterized protein OS=Sarcophilus harrisii GN=GCG PE=3 SV=1
53 : G3WZV7_SARHA 0.52 0.76 2 30 53 81 29 0 0 180 G3WZV7 Uncharacterized protein OS=Sarcophilus harrisii GN=GCG PE=3 SV=1
54 : GLUC_CHICK 0.52 0.76 2 30 56 84 29 0 0 206 P68259 Glucagon OS=Gallus gallus GN=GCG PE=1 SV=1
55 : GLUC_HELSU 0.52 0.72 2 30 54 82 29 0 0 204 O12956 Glucagon OS=Heloderma suspectum GN=GCG PE=2 SV=1
56 : GLUC_LITCT 0.52 0.72 2 30 2 30 29 0 0 103 P15438 Glucagon (Fragments) OS=Lithobates catesbeiana GN=gcg PE=1 SV=2
57 : K7FV67_PELSI 0.52 0.76 2 30 56 84 29 0 0 206 K7FV67 Uncharacterized protein OS=Pelodiscus sinensis GN=GCG PE=3 SV=1
58 : K7SA47_ALLSI 0.52 0.76 2 30 56 84 29 0 0 206 K7SA47 Glucagon OS=Alligator sinensis PE=2 SV=1
59 : L5LRQ3_MYODS 0.52 0.76 2 30 63 91 29 0 0 186 L5LRQ3 Glucagon OS=Myotis davidii GN=MDA_GLEAN10024211 PE=3 SV=1
60 : M3XNA6_MUSPF 0.52 0.76 2 30 54 82 29 0 0 180 M3XNA6 Uncharacterized protein OS=Mustela putorius furo GN=GCG PE=3 SV=1
61 : Q3HLJ1_MELGA 0.52 0.76 2 30 56 84 29 0 0 206 Q3HLJ1 Glucagon (Precursor) OS=Meleagris gallopavo GN=GCG PE=2 SV=1
62 : Q3HLJ2_MELGA 0.52 0.76 2 30 56 84 29 0 0 151 Q3HLJ2 Preproglucagon A (Precursor) OS=Meleagris gallopavo GN=GCG PE=2 SV=1
63 : Q3HWX0_CHICK 0.52 0.76 2 30 56 84 29 0 0 206 Q3HWX0 Preproglucagon B (Precursor) OS=Gallus gallus GN=GCG PE=2 SV=1
64 : Q3HWX1_CHICK 0.52 0.76 2 30 56 84 29 0 0 151 Q3HWX1 Preproglucagon A (Precursor) OS=Gallus gallus GN=GCG PE=2 SV=1
65 : Q6RYB1_9SAUR 0.52 0.76 2 30 85 113 29 0 0 124 Q6RYB1 Proglucagon (Fragment) OS=Agkistrodon piscivorus PE=2 SV=1
66 : Q8UWL9_9NEOB 0.52 0.72 2 30 54 82 29 0 0 220 Q8UWL9 Proglucagon OS=Hoplobatrachus rugulosus PE=2 SV=1
67 : R0JGN8_ANAPL 0.52 0.76 2 30 56 84 29 0 0 201 R0JGN8 Glucagon (Fragment) OS=Anas platyrhynchos GN=Anapl_07609 PE=3 SV=1
68 : S7P0P8_MYOBR 0.52 0.76 2 30 54 82 29 0 0 207 S7P0P8 Glucagon OS=Myotis brandtii GN=D623_10035573 PE=3 SV=1
69 : U3IS24_ANAPL 0.52 0.76 2 30 56 84 29 0 0 207 U3IS24 Uncharacterized protein OS=Anas platyrhynchos PE=3 SV=1
70 : U6CR11_NEOVI 0.52 0.76 2 30 54 82 29 0 0 180 U6CR11 Glucagon OS=Neovison vison GN=GLUC PE=2 SV=1
71 : V8P7K8_OPHHA 0.52 0.72 2 30 55 83 29 0 0 203 V8P7K8 Glucagon OS=Ophiophagus hannah GN=GCG PE=3 SV=1
72 : V9KW24_CALMI 0.52 0.76 2 30 54 82 29 0 0 242 V9KW24 Proglucagon OS=Callorhynchus milii PE=2 SV=1
73 : A1DPK0_CHICK 0.50 0.90 1 30 39 68 30 0 0 150 A1DPK0 Glucose-dependent insulinotropic polypeptide OS=Gallus gallus GN=GIP PE=2 SV=1
74 : G1N5G2_MELGA 0.50 0.90 1 30 39 68 30 0 0 148 G1N5G2 Uncharacterized protein OS=Meleagris gallopavo GN=LOC100547961 PE=4 SV=2
75 : R0JHZ2_ANAPL 0.50 0.90 1 30 15 44 30 0 0 123 R0JHZ2 Gastric inhibitory polypeptide (Fragment) OS=Anas platyrhynchos GN=Anapl_09419 PE=4 SV=1
76 : U3J0H6_ANAPL 0.50 0.90 1 30 40 69 30 0 0 151 U3J0H6 Uncharacterized protein OS=Anas platyrhynchos PE=4 SV=1
77 : U3KK79_FICAL 0.50 0.83 1 30 4 33 30 0 0 37 U3KK79 Uncharacterized protein (Fragment) OS=Ficedula albicollis PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A Y 0 0 266 48 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYYYYYYYY
2 2 A A - 0 0 68 76 57 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAS SSSSSSSSSSSSSSSSSSSASSSSS
3 3 A E + 0 0 130 78 39 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQQQQQQQQQQQQQQQQQQQDQQQQQ
4 4 A G S S- 0 0 60 78 12 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
5 5 A T S > S+ 0 0 115 78 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
6 6 A F H > S+ 0 0 105 78 4 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
7 7 A I H > S+ 0 0 104 78 79 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIITTTTTTTTTTTTTTTTTTTTTTTTTTT
8 8 A S H > S+ 0 0 63 78 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A D H X S+ 0 0 76 78 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
10 10 A Y H X S+ 0 0 116 78 3 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYLYYYYYYYYYYYYYYYYYYYYYYYYYYY
11 11 A S H X S+ 0 0 68 78 3 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSS
12 12 A I H X S+ 0 0 108 78 95 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIKKKKKKKKKKKKKKKKKKKKKKKKKKK
13 13 A A H X S+ 0 0 38 78 104 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTLYYYYYYYYYYYYYYYYYYYYYLYYYYY
14 14 A M H X S+ 0 0 98 78 14 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMLMMMMMMRMLLLLLLLLLLLLLLLLLLLLLLLLLL
15 15 A D H X S+ 0 0 86 78 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDQDDDDDDDDDDDDDDDDDDDDDDDDDDD
16 16 A K H X S+ 0 0 138 78 81 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKANTSSSTSSSSSTSTTASSSSSDSTTTS
17 17 A I H >< S+ 0 0 126 78 96 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILRRRRRRRRRRRRRRRKRRRRRIRRRRR
18 18 A H H >X S+ 0 0 121 78 53 HHHHHHHHHHHHRRRRRRRRRRRRRRRRRRRRRRRRRRRRMMSRRRRRRRRRRRRRRRRRRRRRARRRRR
19 19 A Q H 3X S+ 0 0 79 78 80 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQDAAAAAAAAAAAAAAAAAAAAATAAAAA
20 20 A Q H S+ 0 0 82 78 18 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDMDDDDDDDDDDDDDDDDDDDDDEDDDDD
22 22 A F H X S+ 0 0 116 78 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
23 23 A V H X S+ 0 0 68 78 2 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVVV
24 24 A N H X S+ 0 0 90 78 63 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDNNNNDNNDQQQQQEQQQQQQQQQEQQQQQKQQEQQ
25 25 A W H X S+ 0 0 124 78 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
26 26 A L H < S+ 0 0 41 78 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
27 27 A L H >< S+ 0 0 116 78 12 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMMMMMMMMMMMMMMMMMMMIMMMMM
28 28 A A H 3< S+ 0 0 75 77 62 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAASSSSSSSSTNNSSSNNSSTSSSSSNNSTSS
29 29 A Q T 3< 0 0 135 77 91 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ QQQQQQQQHTTTTTSNNTTTTSTTSTTTTTQSTSTT
30 30 A K < 0 0 203 77 16 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK KKRRRKKKHKKKKKKKKKKKKKKKKKKKKKKKKKKK
## ALIGNMENTS 71 - 77
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A Y 0 0 266 48 0 YYYYY
2 2 A A - 0 0 68 76 57 SSSSSSS
3 3 A E + 0 0 130 78 39 QEEEEEE
4 4 A G S S- 0 0 60 78 12 GGAAAAA
5 5 A T S > S+ 0 0 115 78 0 TTTTTTT
6 6 A F H > S+ 0 0 105 78 4 FFLLLLL
7 7 A I H > S+ 0 0 104 78 79 TSAAAAA
8 8 A S H > S+ 0 0 63 78 0 SSSSSSS
9 9 A D H X S+ 0 0 76 78 0 DDDDDDD
10 10 A Y H X S+ 0 0 116 78 3 YYYYYYY
11 11 A S H X S+ 0 0 68 78 3 SSSSSSS
12 12 A I H X S+ 0 0 108 78 95 KKRRRRR
13 13 A A H X S+ 0 0 38 78 104 YYTTTTT
14 14 A M H X S+ 0 0 98 78 14 LLMMMMM
15 15 A D H X S+ 0 0 86 78 2 DDDDDDD
16 16 A K H X S+ 0 0 138 78 81 TSNNNNH
17 17 A I H >< S+ 0 0 126 78 96 RRMMMMV
18 18 A H H >X S+ 0 0 121 78 53 RRLLLLL
19 19 A Q H 3X S+ 0 0 79 78 80 AAKKKKS
20 20 A Q H S+ 0 0 82 78 18 DDNNNNN
22 22 A F H X S+ 0 0 116 78 0 FFFFFFF
23 23 A V H X S+ 0 0 68 78 2 VVVVVVV
24 24 A N H X S+ 0 0 90 78 63 QQEEEEE
25 25 A W H X S+ 0 0 124 78 0 WWWWWWW
26 26 A L H < S+ 0 0 41 78 0 LLLLLLL
27 27 A L H >< S+ 0 0 116 78 12 MMLLLLL
28 28 A A H 3< S+ 0 0 75 77 62 NSAAAAA
29 29 A Q T 3< 0 0 135 77 91 TTRRRRR
30 30 A K < 0 0 203 77 16 KKRRRRR
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 48 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 58 0 42 0 0 0 0 0 0 0 0 0 76 0 0 0.681 22 0.42
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 65 0 1 78 0 0 0.700 23 0.61
4 4 A 0 0 0 0 0 0 0 94 6 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.238 7 0.88
5 5 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
6 6 A 0 6 0 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.238 7 0.95
7 7 A 0 0 56 0 0 0 0 0 6 0 1 36 0 0 0 0 0 0 0 0 78 0 0 0.923 30 0.21
8 8 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 78 0 0 0.000 0 1.00
10 10 A 0 1 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.069 2 0.96
11 11 A 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 1 0 78 0 0 0.069 2 0.96
12 12 A 0 0 56 0 0 0 0 0 0 0 0 0 0 0 6 37 0 0 0 0 78 0 0 0.867 28 0.04
13 13 A 0 3 0 0 0 0 36 0 53 0 0 9 0 0 0 0 0 0 0 0 78 0 0 1.016 33 -0.05
14 14 A 0 37 0 62 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 78 0 0 0.722 24 0.86
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 99 78 0 0 0.069 2 0.98
16 16 A 0 0 0 0 0 0 0 0 3 0 22 12 0 1 0 55 0 0 6 1 78 0 0 1.291 43 0.19
17 17 A 1 1 56 5 0 0 0 0 0 0 0 0 0 0 35 1 0 0 0 0 78 0 0 1.010 33 0.03
18 18 A 0 6 0 3 0 0 0 0 1 0 1 0 0 17 72 0 0 0 0 0 78 0 0 0.918 30 0.46
19 19 A 0 0 0 0 0 0 0 0 36 0 1 1 0 0 0 5 55 0 0 1 78 0 0 1.016 33 0.20
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 91 0 0 0 78 0 0 0.302 10 0.80
21 21 A 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 6 91 78 0 0 0.373 12 0.81
22 22 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
23 23 A 99 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.069 2 0.98
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 32 10 53 4 78 0 0 1.117 37 0.36
25 25 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
26 26 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.000 0 1.00
27 27 A 0 63 1 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 78 0 0 0.716 23 0.88
28 28 A 0 0 0 0 0 0 0 0 58 0 29 4 0 0 0 0 0 0 9 0 77 0 0 1.016 33 0.37
29 29 A 0 0 0 0 0 0 0 0 0 0 6 27 0 1 6 0 56 0 3 0 77 0 0 1.186 39 0.08
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 10 88 0 0 0 0 77 0 0 0.401 13 0.83
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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