Complet list of 1szl hssp file
Complete list of 1szl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1SZL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-10
HEADER CELL ADHESION 06-APR-04 1SZL
COMPND MOL_ID: 1; MOLECULE: F-SPONDIN; CHAIN: A; FRAGMENT: F-SPONDIN TSR DOMA
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; ORGANISM_COMMON: NO
AUTHOR H.TOSSAVAINEN,K.PAAKKONEN,P.PERMI,I.KILPELAINEN,P.GUNTERT
DBREF 1SZL A 441 499 UNP P35446 SPON1_RAT 441 499
SEQLENGTH 61
NCHAIN 1 chain(s) in 1SZL data set
NALIGN 76
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F1P046_CHICK 0.98 1.00 2 61 435 494 60 0 0 802 F1P046 Spondin-1 OS=Gallus gallus GN=SPON1 PE=4 SV=2
2 : F6WW22_ORNAN 0.98 1.00 2 61 84 143 60 0 0 448 F6WW22 Uncharacterized protein OS=Ornithorhynchus anatinus PE=4 SV=2
3 : G1MR32_MELGA 0.98 1.00 2 61 383 442 60 0 0 750 G1MR32 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=LOC100544863 PE=4 SV=2
4 : G5BUE5_HETGA 0.98 1.00 2 61 377 436 60 0 0 744 G5BUE5 Spondin-1 OS=Heterocephalus glaber GN=GW7_21365 PE=4 SV=1
5 : H0Z3Z5_TAEGU 0.98 1.00 2 61 415 474 60 0 0 782 H0Z3Z5 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=SPON1 PE=4 SV=1
6 : Q3B7D6_RAT 0.98 1.00 2 61 440 499 60 0 0 807 Q3B7D6 RCG39552, isoform CRA_a OS=Rattus norvegicus GN=Spon1 PE=2 SV=1
7 : R0LUI7_ANAPL 0.98 1.00 2 61 201 260 60 0 0 680 R0LUI7 Spondin-1 OS=Anas platyrhynchos GN=Anapl_04599 PE=4 SV=1
8 : SPON1_CHICK 0.98 1.00 2 61 435 494 60 0 0 802 Q9W770 Spondin-1 OS=Gallus gallus GN=SPON1 PE=2 SV=1
9 : SPON1_MOUSE 0.98 1.00 2 61 440 499 60 0 0 807 Q8VCC9 Spondin-1 OS=Mus musculus GN=Spon1 PE=2 SV=1
10 : SPON1_RAT 1SZL 0.98 1.00 2 61 440 499 60 0 0 807 P35446 Spondin-1 OS=Rattus norvegicus GN=Spon1 PE=1 SV=1
11 : U3IGV6_ANAPL 0.98 1.00 2 61 147 206 60 0 0 514 U3IGV6 Uncharacterized protein (Fragment) OS=Anas platyrhynchos PE=4 SV=1
12 : U3K832_FICAL 0.98 1.00 2 61 435 494 60 0 0 802 U3K832 Uncharacterized protein OS=Ficedula albicollis PE=4 SV=1
13 : F6T581_MACMU 0.97 1.00 2 61 440 499 60 0 0 807 F6T581 F-spondin OS=Macaca mulatta GN=SPON1 PE=2 SV=1
14 : F6XC28_CANFA 0.97 1.00 2 61 440 499 60 0 0 807 F6XC28 Uncharacterized protein OS=Canis familiaris GN=SPON1 PE=4 SV=1
15 : F7EHN2_MONDO 0.97 1.00 2 61 435 494 60 0 0 802 F7EHN2 Uncharacterized protein OS=Monodelphis domestica GN=SPON1 PE=4 SV=2
16 : F7F3R2_CALJA 0.97 1.00 2 61 440 499 60 0 0 807 F7F3R2 Spondin-1 OS=Callithrix jacchus GN=SPON1 PE=2 SV=1
17 : F7G1Q5_CALJA 0.97 1.00 2 61 173 232 60 0 0 540 F7G1Q5 Uncharacterized protein OS=Callithrix jacchus GN=SPON1 PE=4 SV=1
18 : G1Q216_MYOLU 0.97 1.00 2 61 166 225 60 0 0 532 G1Q216 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
19 : G1S7J0_NOMLE 0.97 1.00 2 61 440 499 60 0 0 807 G1S7J0 Uncharacterized protein OS=Nomascus leucogenys GN=SPON1 PE=4 SV=1
20 : G1T155_RABIT 0.97 1.00 2 61 440 499 60 0 0 807 G1T155 Uncharacterized protein OS=Oryctolagus cuniculus GN=LOC100351808 PE=4 SV=1
21 : G3R8V4_GORGO 0.97 1.00 2 61 440 499 60 0 0 807 G3R8V4 Uncharacterized protein OS=Gorilla gorilla gorilla PE=4 SV=1
22 : G3SQP9_LOXAF 0.97 1.00 2 61 360 419 60 0 0 727 G3SQP9 Uncharacterized protein (Fragment) OS=Loxodonta africana PE=4 SV=1
23 : G3W1M1_SARHA 0.97 1.00 2 61 434 493 60 0 0 801 G3W1M1 Uncharacterized protein OS=Sarcophilus harrisii GN=SPON1 PE=4 SV=1
24 : G7PQN9_MACFA 0.97 1.00 2 61 440 499 60 0 0 807 G7PQN9 F-spondin OS=Macaca fascicularis GN=EGM_05836 PE=4 SV=1
25 : H2NE18_PONAB 0.97 1.00 2 61 567 626 60 0 0 934 H2NE18 Uncharacterized protein OS=Pongo abelii GN=SPON1 PE=4 SV=2
26 : H9G7A7_ANOCA 0.97 1.00 2 61 282 341 60 0 0 649 H9G7A7 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=spon1 PE=4 SV=1
27 : H9YZY4_MACMU 0.97 1.00 2 61 440 499 60 0 0 807 H9YZY4 Spondin-1 OS=Macaca mulatta GN=SPON1 PE=2 SV=1
28 : I3NH97_SPETR 0.97 1.00 2 61 440 499 60 0 0 807 I3NH97 Uncharacterized protein OS=Spermophilus tridecemlineatus PE=4 SV=1
29 : K7D759_PANTR 0.97 1.00 2 61 440 499 60 0 0 807 K7D759 Spondin 1, extracellular matrix protein OS=Pan troglodytes GN=SPON1 PE=2 SV=1
30 : L5L2U0_PTEAL 0.97 1.00 2 61 440 499 60 0 0 807 L5L2U0 Spondin-1 OS=Pteropus alecto GN=PAL_GLEAN10007487 PE=4 SV=1
31 : L8J4K8_9CETA 0.97 1.00 2 61 281 340 60 0 0 648 L8J4K8 Spondin-1 (Fragment) OS=Bos mutus GN=M91_20660 PE=4 SV=1
32 : M3YP07_MUSPF 0.97 1.00 2 61 440 499 60 0 0 807 M3YP07 Uncharacterized protein OS=Mustela putorius furo GN=Spon1 PE=4 SV=1
33 : Q69ZZ7_MOUSE 0.97 1.00 2 60 439 497 59 0 0 729 Q69ZZ7 MKIAA0762 protein (Fragment) OS=Mus musculus GN=mKIAA0762 PE=4 SV=1
34 : S7Q9C4_MYOBR 0.97 1.00 2 61 375 434 60 0 0 741 S7Q9C4 Spondin-1 OS=Myotis brandtii GN=D623_10009330 PE=4 SV=1
35 : S9WGT1_9CETA 0.97 1.00 2 61 226 285 60 0 0 584 S9WGT1 Spondin-1 OS=Camelus ferus GN=CB1_001613006 PE=4 SV=1
36 : SPON1_BOVIN 0.97 1.00 2 61 440 499 60 0 0 807 Q9GLX9 Spondin-1 OS=Bos taurus GN=SPON1 PE=1 SV=1
37 : SPON1_HUMAN 3Q13 0.97 1.00 2 61 440 499 60 0 0 807 Q9HCB6 Spondin-1 OS=Homo sapiens GN=SPON1 PE=1 SV=2
38 : U6DUK5_NEOVI 0.97 1.00 2 61 438 497 60 0 0 805 U6DUK5 Spondin-1 (Fragment) OS=Neovison vison GN=SPON1 PE=2 SV=1
39 : V8PHA5_OPHHA 0.97 1.00 2 61 153 212 60 0 0 520 V8PHA5 Spondin-1 (Fragment) OS=Ophiophagus hannah GN=SPON1 PE=4 SV=1
40 : W5PBA6_SHEEP 0.97 1.00 2 61 535 594 60 0 0 902 W5PBA6 Uncharacterized protein OS=Ovis aries GN=SPON1 PE=4 SV=1
41 : D2HLT5_AILME 0.95 1.00 2 61 435 494 60 0 0 802 D2HLT5 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_012476 PE=4 SV=1
42 : F6TRQ6_HORSE 0.95 1.00 2 61 325 384 60 0 0 692 F6TRQ6 Uncharacterized protein (Fragment) OS=Equus caballus PE=4 SV=1
43 : G1L6F7_AILME 0.95 1.00 2 61 441 500 60 0 0 808 G1L6F7 Uncharacterized protein OS=Ailuropoda melanoleuca GN=LOC100482269 PE=4 SV=1
44 : H0UVF5_CAVPO 0.95 1.00 2 61 436 495 60 0 0 803 H0UVF5 Uncharacterized protein OS=Cavia porcellus GN=Spon1 PE=4 SV=1
45 : K7F5Q7_PELSI 0.95 1.00 2 61 316 375 60 0 0 683 K7F5Q7 Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
46 : L9LAK7_TUPCH 0.95 1.00 2 61 377 436 60 0 0 744 L9LAK7 Spondin-1 OS=Tupaia chinensis GN=TREES_T100011548 PE=4 SV=1
47 : Q1LUZ8_DANRE 0.93 1.00 2 61 440 499 60 0 0 808 Q1LUZ8 Uncharacterized protein OS=Danio rerio GN=spon1a PE=4 SV=3
48 : W5K6J9_ASTMX 0.93 1.00 2 61 183 242 60 0 0 551 W5K6J9 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
49 : W5M9X9_LEPOC 0.93 1.00 2 61 415 474 60 0 0 783 W5M9X9 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
50 : W5UED8_ICTPU 0.93 1.00 2 61 437 496 60 0 0 805 W5UED8 Spondin-1 OS=Ictalurus punctatus GN=SPON1 PE=2 SV=1
51 : H2S535_TAKRU 0.92 1.00 2 61 445 504 60 0 0 815 H2S535 Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
52 : H2S536_TAKRU 0.92 1.00 2 61 444 503 60 0 0 736 H2S536 Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
53 : H2S537_TAKRU 0.92 1.00 2 61 430 489 60 0 0 800 H2S537 Uncharacterized protein (Fragment) OS=Takifugu rubripes PE=4 SV=1
54 : H2ZTB0_LATCH 0.92 1.00 2 60 327 385 59 0 0 682 H2ZTB0 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
55 : H2ZTB1_LATCH 0.92 1.00 2 60 327 385 59 0 0 619 H2ZTB1 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
56 : H3D8H5_TETNG 0.92 1.00 2 61 441 500 60 0 0 811 H3D8H5 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
57 : I3JDS5_ORENI 0.92 1.00 2 61 440 499 60 0 0 811 I3JDS5 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100700455 PE=4 SV=1
58 : M3ZXT5_XIPMA 0.92 1.00 2 61 438 497 60 0 0 806 M3ZXT5 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
59 : O42113_DANRE 0.92 1.00 2 61 440 499 60 0 0 808 O42113 F-spondin1 OS=Danio rerio GN=spon1a PE=2 SV=1
60 : Q4S0W9_TETNG 0.92 1.00 2 61 438 497 60 0 0 806 Q4S0W9 Chromosome 5 SCAF14773, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00025829001 PE=4 SV=1
61 : V9KGQ4_CALMI 0.91 0.96 2 58 462 518 57 0 0 829 V9KGQ4 Spondin-1-like protein (Fragment) OS=Callorhynchus milii PE=2 SV=1
62 : G3PU13_GASAC 0.90 1.00 2 61 438 497 60 0 0 806 G3PU13 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
63 : A1L1E3_XENTR 0.88 1.00 2 61 436 495 60 0 0 803 A1L1E3 LOC100036727 protein OS=Xenopus tropicalis GN=spon1 PE=2 SV=1
64 : F6TXJ7_XENTR 0.88 0.98 2 61 447 506 60 0 0 802 F6TXJ7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=spon1 PE=4 SV=1
65 : SPON1_XENLA 0.88 1.00 2 61 434 493 60 0 0 803 P35447 Spondin-1 OS=Xenopus laevis GN=spon1 PE=2 SV=1
66 : G3NGD3_GASAC 0.87 0.93 2 61 441 500 60 0 0 813 G3NGD3 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
67 : I3JYD4_ORENI 0.87 0.95 2 61 412 471 60 0 0 774 I3JYD4 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100710117 PE=4 SV=1
68 : M4ALT7_XIPMA 0.83 0.95 2 61 418 477 60 0 0 762 M4ALT7 Uncharacterized protein (Fragment) OS=Xiphophorus maculatus PE=4 SV=1
69 : W5L0P0_ASTMX 0.81 0.95 2 60 250 308 59 0 0 432 W5L0P0 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
70 : A2BFS0_DANRE 0.80 0.97 2 61 399 458 60 0 0 766 A2BFS0 Uncharacterized protein OS=Danio rerio GN=spon1b PE=4 SV=1
71 : B3DH64_DANRE 0.80 0.97 2 61 436 495 60 0 0 804 B3DH64 Spon1b protein OS=Danio rerio GN=spon1b PE=2 SV=1
72 : F1R2Z9_DANRE 0.80 0.97 2 61 436 495 60 0 0 804 F1R2Z9 Uncharacterized protein OS=Danio rerio GN=spon1b PE=4 SV=1
73 : O42114_DANRE 0.80 0.97 2 61 436 495 60 0 0 803 O42114 F-spondin2 OS=Danio rerio GN=spon1b PE=2 SV=1
74 : Q4SPB7_TETNG 0.78 0.93 2 61 386 445 60 0 0 557 Q4SPB7 Chromosome undetermined SCAF14539, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00014915001 PE=4 SV=1
75 : H2RTT1_TAKRU 0.77 0.92 2 61 219 278 60 0 0 582 H2RTT1 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101073783 PE=4 SV=1
76 : W5UBP7_ICTPU 0.77 0.93 2 61 429 488 60 0 0 794 W5UBP7 Spondin-1 OS=Ictalurus punctatus GN=SPON1 PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 439 A G 0 0 53 1 0
2 440 A S + 0 0 94 77 7 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
3 441 A E S S+ 0 0 117 77 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 442 A T S S+ 0 0 51 77 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5 443 A a E -A 35 0A 8 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 444 A I E +A 34 0A 78 77 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
7 445 A Y E -A 32 0A 20 77 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
8 446 A S - 0 0 47 77 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 447 A N S S- 0 0 154 77 20 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGANN
10 448 A W - 0 0 53 77 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
11 449 A S - 0 0 32 77 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
12 450 A P - 0 0 117 77 2 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPQPPPPPPPPP
13 451 A W - 0 0 68 77 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
14 452 A S - 0 0 55 77 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
15 453 A A - 0 0 90 77 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16 454 A b - 0 0 35 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
17 455 A S S S+ 0 0 106 77 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
18 456 A S - 0 0 22 77 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
19 457 A S S S+ 0 0 97 77 38 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAAASSAAASASAAAAASASS
20 458 A T S S- 0 0 73 77 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
21 459 A c S S+ 0 0 69 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22 460 A E S S- 0 0 147 77 23 EEEEEEEEEEEEDDDDDDDDDDDDDEDDDDDDEDDDDDEDDDDDDDEEEEEEEEEEEEEEEDDDDEEDDD
23 461 A K + 0 0 135 77 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
24 462 A G E -B 51 0B 14 77 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
25 463 A K E -B 50 0B 120 77 31 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRRR
26 464 A R - 0 0 68 77 11 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
27 465 A M + 0 0 80 77 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
28 466 A R E -C 47 0C 41 77 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
29 467 A Q E -C 46 0C 133 77 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
30 468 A R - 0 0 41 77 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
31 469 A M - 0 0 133 77 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
32 470 A L E -A 7 0A 39 77 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
33 471 A K E - 0 0A 141 77 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
34 472 A A E -A 6 0A 53 77 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
35 473 A Q E -A 5 0A 52 77 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
36 474 A L S S+ 0 0 123 77 8 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
37 475 A D > - 0 0 65 77 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
38 476 A L T 3 S+ 0 0 143 77 45 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLAP
39 477 A S T 3 S+ 0 0 105 77 36 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTN
40 478 A V S < S- 0 0 76 77 12 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMVVL
41 479 A P - 0 0 96 77 1 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPPPPPPPPPPPPPPPP
42 480 A a - 0 0 12 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
43 481 A P > + 0 0 105 77 40 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLL
44 482 A D T 3 + 0 0 68 77 51 DDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDDEDDDDDEDHHHHHHHHHHHHHHHHDDDHHHHH
45 483 A T T 3 S+ 0 0 59 77 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
46 484 A Q E < +C 29 0C 108 77 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
47 485 A D E -C 28 0C 43 77 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
48 486 A F + 0 0 95 77 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
49 487 A Q - 0 0 62 77 33 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEEEEEEEEEEEEEEEEEEEQQQEE
50 488 A P E -B 25 0B 76 77 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
51 489 A b E -B 24 0B 19 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
52 490 A M - 0 0 49 77 1 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMIMMMMMMMMMMM
53 491 A G > - 0 0 8 77 16 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGGGGGGGGAGG
54 492 A P T 3 S+ 0 0 115 77 4 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
55 493 A G T 3 S+ 0 0 86 77 4 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
56 494 A c < + 0 0 32 77 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
57 495 A S - 0 0 51 77 25 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSQSSSSSSSRS
58 496 A D S > S+ 0 0 113 77 42 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDEDDDDDDDDDDDDDDDDDDDDDDIRMEE
59 497 A E T 3 S+ 0 0 181 76 5 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEEEE EDDDEEEEE
60 498 A D T 3 0 0 166 76 27 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDDDDDDDDDEDDDDDDDGGDDDDD DEGEAEEEE
61 499 A G < 0 0 83 72 53 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGSAAAASA ASASA AATATPP A
## ALIGNMENTS 71 - 76
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 439 A G 0 0 53 1 0
2 440 A S + 0 0 94 77 7 PPPSPP
3 441 A E S S+ 0 0 117 77 0 EEEEEE
4 442 A T S S+ 0 0 51 77 0 TTTTTT
5 443 A a E -A 35 0A 8 77 0 CCCCCC
6 444 A I E +A 34 0A 78 77 0 IIIIII
7 445 A Y E -A 32 0A 20 77 0 YYYYYY
8 446 A S - 0 0 47 77 0 SSSSSS
9 447 A N S S- 0 0 154 77 20 NNNGEN
10 448 A W - 0 0 53 77 0 WWWWWW
11 449 A S - 0 0 32 77 0 SSSSSS
12 450 A P - 0 0 117 77 2 PPPPPP
13 451 A W - 0 0 68 77 0 WWWWWW
14 452 A S - 0 0 55 77 0 SSSSSS
15 453 A A - 0 0 90 77 0 AAAAAA
16 454 A b - 0 0 35 77 0 CCCCCC
17 455 A S S S+ 0 0 106 77 0 SSSSSS
18 456 A S - 0 0 22 77 0 SSSSSS
19 457 A S S S+ 0 0 97 77 38 SSSTAA
20 458 A T S S- 0 0 73 77 0 TTTTTT
21 459 A c S S+ 0 0 69 77 0 CCCCCC
22 460 A E S S- 0 0 147 77 23 DDDEEA
23 461 A K + 0 0 135 77 0 KKKKKK
24 462 A G E -B 51 0B 14 77 0 GGGGGG
25 463 A K E -B 50 0B 120 77 31 RRRRRL
26 464 A R - 0 0 68 77 11 RRRQQR
27 465 A M + 0 0 80 77 0 MMMMMM
28 466 A R E -C 47 0C 41 77 0 RRRRRR
29 467 A Q E -C 46 0C 133 77 0 QQQQQQ
30 468 A R - 0 0 41 77 0 RRRRRR
31 469 A M - 0 0 133 77 0 MMMMMM
32 470 A L E -A 7 0A 39 77 0 LLLLLL
33 471 A K E - 0 0A 141 77 0 KKKKKK
34 472 A A E -A 6 0A 53 77 0 AAAAAA
35 473 A Q E -A 5 0A 52 77 0 QQQQQQ
36 474 A L S S+ 0 0 123 77 8 LLLTLL
37 475 A D > - 0 0 65 77 0 DDDDDD
38 476 A L T 3 S+ 0 0 143 77 45 PPPLPA
39 477 A S T 3 S+ 0 0 105 77 36 NNNGTT
40 478 A V S < S- 0 0 76 77 12 LLLVVV
41 479 A P - 0 0 96 77 1 PPPPPP
42 480 A a - 0 0 12 77 0 CCCCCC
43 481 A P > + 0 0 105 77 40 LLLLPP
44 482 A D T 3 + 0 0 68 77 51 HHHHHH
45 483 A T T 3 S+ 0 0 59 77 0 TTTTTT
46 484 A Q E < +C 29 0C 108 77 0 QQQQQQ
47 485 A D E -C 28 0C 43 77 0 DDDDDD
48 486 A F + 0 0 95 77 0 FFFFFF
49 487 A Q - 0 0 62 77 33 EEEQQE
50 488 A P E -B 25 0B 76 77 0 PPPPPP
51 489 A b E -B 24 0B 19 77 0 CCCCCC
52 490 A M - 0 0 49 77 1 MMMMMM
53 491 A G > - 0 0 8 77 16 GGGATA
54 492 A P T 3 S+ 0 0 115 77 4 PPPPPS
55 493 A G T 3 S+ 0 0 86 77 4 GGGGEG
56 494 A c < + 0 0 32 77 0 CCCCCC
57 495 A S - 0 0 51 77 25 SSSATR
58 496 A D S > S+ 0 0 113 77 42 EEEVVE
59 497 A E T 3 S+ 0 0 181 76 5 EEEEEE
60 498 A D T 3 0 0 166 76 27 EEEEEE
61 499 A G < 0 0 83 72 53 AAASTA
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 439 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
2 440 A 0 0 0 0 0 0 0 0 0 97 3 0 0 0 0 0 0 0 0 0 77 0 0 0.120 4 0.93
3 441 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 77 0 0 0.000 0 1.00
4 442 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
5 443 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
6 444 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
7 445 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
8 446 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
9 447 A 0 0 0 0 0 0 0 4 1 0 0 0 0 0 0 0 0 1 94 0 77 0 0 0.302 10 0.79
10 448 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
11 449 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
12 450 A 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 1 0 0 0 77 0 0 0.069 2 0.98
13 451 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
14 452 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
15 453 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
16 454 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
17 455 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
18 456 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
19 457 A 0 0 0 0 0 0 0 0 19 0 79 1 0 0 0 0 0 0 0 0 77 0 0 0.560 18 0.61
20 458 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
21 459 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
22 460 A 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 45 0 53 77 0 0 0.750 25 0.77
23 461 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 77 0 0 0.000 0 1.00
24 462 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
25 463 A 0 1 0 0 0 0 0 0 0 0 0 0 0 0 13 86 0 0 0 0 77 0 0 0.454 15 0.69
26 464 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 3 0 0 0 77 0 0 0.120 4 0.89
27 465 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
28 466 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 77 0 0 0.000 0 1.00
29 467 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 77 0 0 0.000 0 1.00
30 468 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 77 0 0 0.000 0 1.00
31 469 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
32 470 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
33 471 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 77 0 0 0.000 0 1.00
34 472 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
35 473 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 77 0 0 0.000 0 1.00
36 474 A 0 99 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 77 0 0 0.069 2 0.91
37 475 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 77 0 0 0.000 0 1.00
38 476 A 0 91 0 0 0 0 0 0 3 6 0 0 0 0 0 0 0 0 0 0 77 0 0 0.359 11 0.55
39 477 A 0 0 0 0 0 0 0 1 0 0 90 4 0 0 0 0 0 0 5 0 77 0 0 0.435 14 0.64
40 478 A 94 5 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.273 9 0.88
41 479 A 0 0 0 0 0 0 0 0 1 99 0 0 0 0 0 0 0 0 0 0 77 0 0 0.069 2 0.98
42 480 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
43 481 A 0 8 0 0 0 0 0 0 0 92 0 0 0 0 0 0 0 0 0 0 77 0 0 0.274 9 0.60
44 482 A 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0 4 0 61 77 0 0 0.795 26 0.48
45 483 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
46 484 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 77 0 0 0.000 0 1.00
47 485 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 77 0 0 0.000 0 1.00
48 486 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
49 487 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68 32 0 0 77 0 0 0.630 21 0.67
50 488 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
51 489 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
52 490 A 0 0 1 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 77 0 0 0.069 2 0.98
53 491 A 0 0 0 0 0 0 0 94 4 0 0 1 0 0 0 0 0 0 0 1 77 0 0 0.302 10 0.83
54 492 A 0 0 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 0 77 0 0 0.069 2 0.95
55 493 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 1 0 0 77 0 0 0.069 2 0.95
56 494 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
57 495 A 0 0 0 0 0 0 0 0 1 0 94 1 0 0 3 0 1 0 0 0 77 0 0 0.327 10 0.75
58 496 A 3 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 10 0 83 77 0 0 0.653 21 0.58
59 497 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 7 76 0 0 0.243 8 0.95
60 498 A 0 0 0 0 0 0 0 5 1 0 0 0 0 0 0 0 0 17 0 76 76 0 0 0.720 24 0.73
61 499 A 0 0 0 0 0 0 0 64 22 3 7 4 0 0 0 0 0 0 0 0 72 0 0 1.038 34 0.47
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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