Complet list of 1ssu hssp file
Complete list of 1ssu.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1SSU
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER CELL ADHESION 24-MAR-04 1SSU
COMPND MOL_ID: 1; MOLECULE: VITRONECTIN; CHAIN: A; FRAGMENT: SOMATOMEDIN B DO
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR Y.KAMIKUBO,R.DE GUZMAN,G.KROON,S.CURRIDEN,J.G.NEELS, M.J.CHURCHILL,P.D
DBREF 1SSU A 1 51 UNP P04004 VTNC_HUMAN 20 70
SEQLENGTH 51
NCHAIN 1 chain(s) in 1SSU data set
NALIGN 162
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : D9ZGG2_HUMAN 1.00 1.00 1 51 20 70 51 0 0 478 D9ZGG2 Vitronectin OS=Homo sapiens GN=VTN PE=2 SV=1
2 : F5GX75_HUMAN 1.00 1.00 1 51 20 70 51 0 0 118 F5GX75 Vitronectin (Fragment) OS=Homo sapiens GN=VTN PE=2 SV=2
3 : VTNC_HUMAN 3BT2 1.00 1.00 1 51 20 70 51 0 0 478 P04004 Vitronectin OS=Homo sapiens GN=VTN PE=1 SV=1
4 : F6SSW9_MACMU 0.98 0.98 1 51 20 70 51 0 0 479 F6SSW9 Uncharacterized protein OS=Macaca mulatta GN=VTN PE=4 SV=1
5 : G3R679_GORGO 0.98 0.98 1 51 20 70 51 0 0 478 G3R679 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101154561 PE=4 SV=1
6 : G7NGJ1_MACMU 0.98 0.98 1 51 20 70 51 0 0 489 G7NGJ1 Serum-spreading factor OS=Macaca mulatta GN=EGK_08321 PE=4 SV=1
7 : G7PTW8_MACFA 0.98 0.98 1 51 20 70 51 0 0 489 G7PTW8 Serum-spreading factor OS=Macaca fascicularis GN=EGM_07543 PE=4 SV=1
8 : H2NT31_PONAB 0.98 0.98 1 51 20 70 51 0 0 414 H2NT31 Uncharacterized protein OS=Pongo abelii GN=VTN PE=4 SV=2
9 : H2QCH3_PANTR 0.98 0.98 1 51 20 70 51 0 0 478 H2QCH3 Uncharacterized protein OS=Pan troglodytes GN=VTN PE=2 SV=1
10 : Q5NVS5_PONAB 0.98 0.98 1 51 20 70 51 0 0 478 Q5NVS5 Putative uncharacterized protein DKFZp470F0511 OS=Pongo abelii GN=DKFZp470F0511 PE=2 SV=1
11 : G1QNN4_NOMLE 0.94 0.96 1 51 20 70 51 0 0 458 G1QNN4 Uncharacterized protein OS=Nomascus leucogenys GN=VTN PE=4 SV=1
12 : G3TMX5_LOXAF 0.94 0.96 1 51 20 70 51 0 0 424 G3TMX5 Uncharacterized protein OS=Loxodonta africana GN=VTN PE=4 SV=1
13 : G5BVN8_HETGA 0.92 0.96 1 50 20 69 50 0 0 588 G5BVN8 Vitronectin OS=Heterocephalus glaber GN=GW7_08170 PE=4 SV=1
14 : F6V881_HORSE 0.90 0.96 1 51 20 70 51 0 0 478 F6V881 Uncharacterized protein OS=Equus caballus GN=VTN PE=4 SV=1
15 : G9KXI3_MUSPF 0.90 0.94 1 51 20 70 51 0 0 469 G9KXI3 Vitronectin (Fragment) OS=Mustela putorius furo PE=2 SV=1
16 : I3MSG3_SPETR 0.90 0.92 1 51 20 70 51 0 0 468 I3MSG3 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=VTN PE=4 SV=1
17 : M3YS87_MUSPF 0.90 0.94 1 51 20 70 51 0 0 470 M3YS87 Uncharacterized protein OS=Mustela putorius furo GN=VTN PE=4 SV=1
18 : T0NLF0_9CETA 0.90 0.96 1 50 41 90 50 0 0 490 T0NLF0 Vitronectin OS=Camelus ferus GN=CB1_000765074 PE=4 SV=1
19 : A7YB29_PIG 0.88 0.94 1 49 20 68 49 0 0 245 A7YB29 Vitronectin (Fragment) OS=Sus scrofa PE=2 SV=1
20 : D2GU38_AILME 0.88 0.92 1 51 20 70 51 0 0 469 D2GU38 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_000124 PE=4 SV=1
21 : F1PUM6_CANFA 0.88 0.94 1 51 20 70 51 0 0 470 F1PUM6 Uncharacterized protein OS=Canis familiaris GN=VTN PE=4 SV=1
22 : G1LEL6_AILME 0.88 0.92 1 51 20 70 51 0 0 470 G1LEL6 Uncharacterized protein OS=Ailuropoda melanoleuca GN=VTN PE=4 SV=1
23 : G1PKA4_MYOLU 0.88 0.94 1 51 20 70 51 0 0 475 G1PKA4 Uncharacterized protein OS=Myotis lucifugus GN=VTN PE=4 SV=1
24 : G1U415_RABIT 0.88 0.98 1 51 20 70 51 0 0 475 G1U415 Vitronectin OS=Oryctolagus cuniculus GN=VTN PE=4 SV=1
25 : L5LN49_MYODS 0.88 0.94 1 51 20 70 51 0 0 475 L5LN49 Vitronectin OS=Myotis davidii GN=MDA_GLEAN10016809 PE=4 SV=1
26 : L8Y6P1_TUPCH 0.88 0.98 1 51 20 70 51 0 0 480 L8Y6P1 Vitronectin OS=Tupaia chinensis GN=TREES_T100003583 PE=4 SV=1
27 : M3W9I5_FELCA 0.88 0.94 1 51 20 70 51 0 0 468 M3W9I5 Uncharacterized protein OS=Felis catus GN=VTN PE=4 SV=1
28 : P79272_PIG 0.88 0.94 1 49 20 68 49 0 0 388 P79272 Vitronectin (Precursor) OS=Sus scrofa PE=2 SV=1
29 : S7NBE9_MYOBR 0.88 0.94 1 51 20 70 51 0 0 500 S7NBE9 Vitronectin OS=Myotis brandtii GN=D623_10015987 PE=4 SV=1
30 : U6DDQ3_NEOVI 0.88 0.94 1 51 20 70 51 0 0 417 U6DDQ3 Vitronectin (Fragment) OS=Neovison vison GN=VTNC PE=2 SV=1
31 : VTNC_PIG 0.88 0.94 1 49 20 68 49 0 0 459 P48819 Vitronectin OS=Sus scrofa GN=VTN PE=1 SV=1
32 : VTNC_RABIT 0.88 0.98 1 51 20 70 51 0 0 475 P22458 Vitronectin OS=Oryctolagus cuniculus GN=VTN PE=1 SV=1
33 : F7HUN3_CALJA 0.86 0.90 1 51 20 70 51 0 0 458 F7HUN3 Uncharacterized protein OS=Callithrix jacchus GN=VTN PE=4 SV=1
34 : H0V077_CAVPO 0.86 0.96 1 50 20 69 50 0 0 471 H0V077 Uncharacterized protein OS=Cavia porcellus GN=VTN PE=4 SV=1
35 : H0WMK9_OTOGA 0.86 0.94 1 51 20 70 51 0 0 470 H0WMK9 Uncharacterized protein OS=Otolemur garnettii GN=VTN PE=4 SV=1
36 : I3L998_PIG 0.86 0.94 1 49 20 68 49 0 0 387 I3L998 Vitronectin OS=Sus scrofa GN=VTN PE=4 SV=1
37 : I3LP50_PIG 0.86 0.94 1 49 20 68 49 0 0 459 I3LP50 Vitronectin OS=Sus scrofa GN=VTN PE=4 SV=1
38 : L5JR47_PTEAL 0.86 0.94 1 51 20 70 51 0 0 462 L5JR47 Vitronectin OS=Pteropus alecto GN=PAL_GLEAN10019926 PE=4 SV=1
39 : G3GTP7_CRIGR 0.84 0.92 1 51 20 70 51 0 0 876 G3GTP7 Vitronectin OS=Cricetulus griseus GN=I79_001034 PE=3 SV=1
40 : G3IP93_CRIGR 0.84 0.92 1 51 20 70 51 0 0 230 G3IP93 Vitronectin OS=Cricetulus griseus GN=I79_025798 PE=4 SV=1
41 : I3L638_PIG 0.84 0.94 1 49 20 68 49 0 0 458 I3L638 Vitronectin OS=Sus scrofa GN=VTN PE=4 SV=1
42 : I3L9F8_PIG 0.84 0.94 1 49 20 68 49 0 0 386 I3L9F8 Vitronectin OS=Sus scrofa GN=VTN PE=4 SV=1
43 : L8HY22_9CETA 0.84 0.92 1 51 20 70 51 0 0 476 L8HY22 Vitronectin OS=Bos mutus GN=M91_20434 PE=4 SV=1
44 : Q3LRQ1_CAPHI 0.84 0.92 1 51 1 51 51 0 0 444 Q3LRQ1 Vitronectin (Fragment) OS=Capra hircus PE=2 SV=1
45 : Q3ZBS7_BOVIN 0.84 0.92 1 51 20 70 51 0 0 476 Q3ZBS7 Uncharacterized protein OS=Bos taurus GN=VTN PE=2 SV=1
46 : Q3KR94_RAT 0.82 0.88 1 51 20 70 51 0 0 478 Q3KR94 Protein Vtn OS=Rattus norvegicus GN=Vtn PE=2 SV=1
47 : Q62905_RAT 0.82 0.88 1 51 20 70 51 0 0 478 Q62905 Vitronectin OS=Rattus norvegicus PE=2 SV=1
48 : Q7TQ11_RAT 0.82 0.88 1 51 20 70 51 0 0 490 Q7TQ11 Aa1018 OS=Rattus norvegicus GN=Vtn PE=2 SV=1
49 : VTNC_MOUSE 0.82 0.90 1 51 20 70 51 0 0 478 P29788 Vitronectin OS=Mus musculus GN=Vtn PE=1 SV=2
50 : G3WHI7_SARHA 0.80 0.86 1 51 25 75 51 0 0 474 G3WHI7 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=VTN PE=4 SV=1
51 : F6QTH2_MONDO 0.76 0.88 1 51 21 71 51 0 0 464 F6QTH2 Uncharacterized protein (Fragment) OS=Monodelphis domestica GN=VTN PE=4 SV=1
52 : F7GA06_ORNAN 0.76 0.88 1 51 23 73 51 0 0 301 F7GA06 Uncharacterized protein OS=Ornithorhynchus anatinus GN=VTN PE=4 SV=1
53 : W5Q9D5_SHEEP 0.76 0.86 1 51 20 70 51 0 0 475 W5Q9D5 Uncharacterized protein OS=Ovis aries GN=VTN PE=4 SV=1
54 : E1C7A7_CHICK 0.68 0.88 2 51 20 69 50 0 0 453 E1C7A7 Uncharacterized protein OS=Gallus gallus GN=VTN PE=4 SV=2
55 : G1N1Y6_MELGA 0.68 0.90 2 51 20 69 50 0 0 452 G1N1Y6 Uncharacterized protein OS=Meleagris gallopavo GN=VTN PE=4 SV=2
56 : O12945_CHICK 0.68 0.88 2 51 20 69 50 0 0 453 O12945 Vitronectin OS=Gallus gallus PE=2 SV=1
57 : U3J2R0_ANAPL 0.67 0.82 1 51 20 70 51 0 0 447 U3J2R0 Uncharacterized protein OS=Anas platyrhynchos GN=VTN PE=4 SV=1
58 : Q90351_COTCO 0.66 0.88 2 51 20 69 50 0 0 359 Q90351 Nectinepsin OS=Coturnix coturnix PE=2 SV=1
59 : H3ABB6_LATCH 0.65 0.79 4 51 19 66 48 0 0 460 H3ABB6 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
60 : H0Z6B5_TAEGU 0.64 0.86 2 51 20 69 50 0 0 434 H0Z6B5 Uncharacterized protein OS=Taeniopygia guttata GN=VTN PE=4 SV=1
61 : U3JVG5_FICAL 0.64 0.88 2 51 20 69 50 0 0 433 U3JVG5 Uncharacterized protein OS=Ficedula albicollis GN=VTN PE=4 SV=1
62 : A4IHE8_XENTR 0.62 0.76 2 51 23 72 50 0 0 447 A4IHE8 Vtn protein (Fragment) OS=Xenopus tropicalis GN=vtn PE=2 SV=1
63 : A9ULL5_XENTR 0.62 0.76 2 51 29 78 50 0 0 453 A9ULL5 Vtn protein (Fragment) OS=Xenopus tropicalis GN=vtn PE=2 SV=1
64 : F7CQ66_XENTR 0.62 0.76 2 51 29 78 50 0 0 453 F7CQ66 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=vtn PE=4 SV=1
65 : H2UV95_TAKRU 0.62 0.82 1 39 18 56 39 0 0 520 H2UV95 Uncharacterized protein OS=Takifugu rubripes GN=LOC101063214 PE=4 SV=1
66 : H2UV96_TAKRU 0.62 0.82 1 39 18 56 39 0 0 448 H2UV96 Uncharacterized protein OS=Takifugu rubripes GN=LOC101063214 PE=4 SV=1
67 : H9GID1_ANOCA 0.62 0.79 2 49 22 69 48 0 0 449 H9GID1 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=VTN PE=4 SV=1
68 : K7GIQ2_PELSI 0.62 0.86 2 51 20 69 50 0 0 455 K7GIQ2 Uncharacterized protein OS=Pelodiscus sinensis GN=VTN PE=4 SV=1
69 : Q5HZC4_XENTR 0.62 0.76 2 51 27 76 50 0 0 451 Q5HZC4 Vtn-prov protein (Fragment) OS=Xenopus tropicalis GN=vtn-prov PE=2 SV=1
70 : M3XGU0_LATCH 0.61 0.80 1 51 18 68 51 0 0 492 M3XGU0 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
71 : K4FT09_CALMI 0.60 0.80 1 40 20 59 40 0 0 413 K4FT09 Vitronectin OS=Callorhynchus milii PE=2 SV=1
72 : M7BQ53_CHEMY 0.60 0.82 2 51 20 69 50 0 0 426 M7BQ53 Vitronectin OS=Chelonia mydas GN=UY3_05099 PE=4 SV=1
73 : V9KX97_CALMI 0.60 0.80 1 40 20 59 40 0 0 416 V9KX97 Vitronectin OS=Callorhynchus milii PE=2 SV=1
74 : W5MDU0_LEPOC 0.60 0.76 2 51 19 68 50 0 0 485 W5MDU0 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
75 : C5H606_XENLA 0.56 0.74 2 51 23 72 50 0 0 444 C5H606 Vitronectin OS=Xenopus laevis GN=vtn PE=2 SV=1
76 : H2LVM0_ORYLA 0.56 0.79 1 39 20 58 39 0 0 510 H2LVM0 Uncharacterized protein OS=Oryzias latipes GN=LOC101170202 PE=4 SV=1
77 : W5US52_ICTPU 0.56 0.73 1 41 19 59 41 0 0 492 W5US52 Vitronectin OS=Ictalurus punctatus GN=VTN PE=2 SV=1
78 : F1R4H1_DANRE 0.55 0.75 1 40 17 56 40 0 0 514 F1R4H1 Uncharacterized protein OS=Danio rerio GN=vtna PE=4 SV=1
79 : Q502F1_DANRE 0.55 0.75 1 40 17 56 40 0 0 514 Q502F1 Vitronectin a OS=Danio rerio GN=vtna PE=2 SV=1
80 : G3P167_GASAC 0.54 0.69 1 39 18 56 39 0 0 519 G3P167 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
81 : H2U3R1_TAKRU 0.54 0.69 1 39 15 52 39 1 1 461 H2U3R1 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101063812 PE=4 SV=1
82 : H3CJ30_TETNG 0.54 0.82 1 39 21 59 39 0 0 479 H3CJ30 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
83 : I3JN45_ORENI 0.52 0.77 1 40 18 57 40 0 0 522 I3JN45 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100693578 PE=4 SV=1
84 : W5LM04_ASTMX 0.52 0.73 1 40 18 57 40 0 0 575 W5LM04 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
85 : W5LM09_ASTMX 0.52 0.73 1 40 18 57 40 0 0 474 W5LM09 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
86 : G3P178_GASAC 0.51 0.63 3 45 23 65 43 0 0 493 G3P178 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
87 : W5LQX4_ASTMX 0.51 0.76 1 51 18 68 51 0 0 461 W5LQX4 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
88 : W5LQX5_ASTMX 0.51 0.76 1 51 27 77 51 0 0 463 W5LQX5 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
89 : I3KIE1_ORENI 0.50 0.71 2 43 18 59 42 0 0 285 I3KIE1 Uncharacterized protein (Fragment) OS=Oreochromis niloticus PE=4 SV=1
90 : A7E2Q3_DANRE 0.49 0.73 1 51 34 84 51 0 0 469 A7E2Q3 Vtnb protein (Fragment) OS=Danio rerio GN=vtnb PE=2 SV=1
91 : F1Q5D8_DANRE 0.49 0.73 1 51 17 67 51 0 0 449 F1Q5D8 Uncharacterized protein OS=Danio rerio GN=vtnb PE=4 SV=1
92 : F1QAB4_DANRE 0.49 0.67 1 39 60 98 39 0 0 740 F1QAB4 Uncharacterized protein OS=Danio rerio GN=prg4b PE=4 SV=1
93 : F1QI63_DANRE 0.49 0.73 1 51 34 84 51 0 0 469 F1QI63 Uncharacterized protein (Fragment) OS=Danio rerio GN=vtnb PE=4 SV=1
94 : F1REF9_DANRE 0.49 0.67 1 39 60 98 39 0 0 711 F1REF9 Uncharacterized protein OS=Danio rerio GN=prg4b PE=4 SV=2
95 : I3KIE0_ORENI 0.49 0.67 2 40 42 80 39 0 0 457 I3KIE0 Uncharacterized protein (Fragment) OS=Oreochromis niloticus PE=4 SV=1
96 : Q7SXJ7_DANRE 0.49 0.73 1 51 31 81 51 0 0 463 Q7SXJ7 Vtnb protein (Fragment) OS=Danio rerio GN=vtnb PE=2 SV=1
97 : R0JBK9_ANAPL 0.49 0.66 4 44 44 84 41 0 0 1306 R0JBK9 Proteoglycan-4 (Fragment) OS=Anas platyrhynchos GN=Anapl_16296 PE=4 SV=1
98 : U3IYV7_ANAPL 0.49 0.66 4 44 68 108 41 0 0 1408 U3IYV7 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=PRG4 PE=4 SV=1
99 : G1PVN1_MYOLU 0.48 0.68 4 43 69 108 40 0 0 963 G1PVN1 Uncharacterized protein OS=Myotis lucifugus GN=PRG4 PE=4 SV=1
100 : H3DFD0_TETNG 0.48 0.66 1 50 20 68 50 1 1 435 H3DFD0 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
101 : E2RC11_CANFA 0.47 0.53 3 47 22 66 45 0 0 411 E2RC11 Uncharacterized protein OS=Canis familiaris GN=ENDOU PE=4 SV=2
102 : W4YS72_STRPU 0.47 0.74 4 46 179 221 43 0 0 528 W4YS72 Uncharacterized protein OS=Strongylocentrotus purpuratus GN=Sp-SommL_2 PE=4 SV=1
103 : W5M012_LEPOC 0.47 0.62 3 47 65 109 45 0 0 507 W5M012 Uncharacterized protein (Fragment) OS=Lepisosteus oculatus PE=4 SV=1
104 : B8JMI4_DANRE 0.46 0.72 3 41 65 103 39 0 0 129 B8JMI4 Uncharacterized protein OS=Danio rerio GN=prg4a PE=4 SV=1
105 : B8JMI5_DANRE 0.46 0.72 3 41 65 103 39 0 0 486 B8JMI5 Uncharacterized protein OS=Danio rerio GN=prg4a PE=4 SV=1
106 : C3YQX7_BRAFL 0.46 0.59 1 39 134 174 41 1 2 869 C3YQX7 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_81347 PE=4 SV=1
107 : E0CY90_MOUSE 0.46 0.67 1 39 25 63 39 0 0 99 E0CY90 Proteoglycan 4 (Fragment) OS=Mus musculus GN=Prg4 PE=2 SV=1
108 : F6T3B2_MACMU 0.46 0.69 1 39 25 63 39 0 0 275 F6T3B2 Uncharacterized protein OS=Macaca mulatta GN=LOC716849 PE=4 SV=1
109 : F6VTD3_HORSE 0.46 0.67 2 40 67 105 39 0 0 190 F6VTD3 Uncharacterized protein OS=Equus caballus GN=PRG4 PE=4 SV=1
110 : F6X999_MONDO 0.46 0.61 4 44 27 67 41 0 0 1297 F6X999 Uncharacterized protein OS=Monodelphis domestica GN=PRG4 PE=4 SV=2
111 : G3WRA3_SARHA 0.46 0.59 4 44 27 67 41 0 0 1050 G3WRA3 Uncharacterized protein OS=Sarcophilus harrisii GN=PRG4 PE=4 SV=1
112 : G7NXF3_MACFA 0.46 0.69 1 39 25 63 39 0 0 275 G7NXF3 Putative uncharacterized protein (Fragment) OS=Macaca fascicularis GN=EGM_01587 PE=4 SV=1
113 : H2UDC4_TAKRU 0.46 0.71 1 41 66 106 41 0 0 395 H2UDC4 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101064652 PE=4 SV=1
114 : Q4RXX6_TETNG 0.46 0.72 1 39 62 100 39 0 0 380 Q4RXX6 Chromosome 11 SCAF14979, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00027244001 PE=4 SV=1
115 : Q7ZW66_DANRE 0.46 0.72 3 41 65 103 39 0 0 486 Q7ZW66 Zgc:56698 OS=Danio rerio GN=prg4a PE=2 SV=1
116 : E0CXA1_MOUSE 0.45 0.65 1 40 25 64 40 0 0 179 E0CXA1 Proteoglycan 4 (Fragment) OS=Mus musculus GN=Prg4 PE=2 SV=1
117 : E9QQ17_MOUSE 0.45 0.65 1 40 25 64 40 0 0 1012 E9QQ17 Proteoglycan 4 OS=Mus musculus GN=Prg4 PE=2 SV=1
118 : ENDOU_PAROL 0.45 0.70 1 47 62 108 47 0 0 385 Q9PTU6 Poly(U)-specific endoribonuclease OS=Paralichthys olivaceus GN=endou PE=2 SV=1
119 : G3P5B7_GASAC 0.45 0.60 1 39 49 88 40 1 1 850 G3P5B7 Uncharacterized protein OS=Gasterosteus aculeatus GN=ENPP2 (2 of 2) PE=4 SV=1
120 : G3T0H0_LOXAF 0.45 0.57 3 42 22 61 40 0 0 412 G3T0H0 Uncharacterized protein OS=Loxodonta africana GN=ENDOU PE=4 SV=1
121 : H2TQW9_TAKRU 0.45 0.60 1 39 4 43 40 1 1 805 H2TQW9 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=ENPP2 (1 of 2) PE=4 SV=1
122 : H9G5L5_ANOCA 0.45 0.59 1 44 25 68 44 0 0 1410 H9G5L5 Uncharacterized protein OS=Anolis carolinensis GN=PRG4 PE=4 SV=2
123 : I3JUS2_ORENI 0.45 0.69 1 42 61 102 42 0 0 612 I3JUS2 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100694857 PE=4 SV=1
124 : I3JUS3_ORENI 0.45 0.69 1 42 62 103 42 0 0 482 I3JUS3 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100694857 PE=4 SV=1
125 : K7G3G8_PELSI 0.45 0.60 1 40 65 104 40 0 0 1371 K7G3G8 Uncharacterized protein OS=Pelodiscus sinensis GN=PRG4 PE=4 SV=1
126 : G3PPT1_GASAC 0.44 0.67 1 39 41 79 39 0 0 448 G3PPT1 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
127 : H2LZW5_ORYLA 0.44 0.67 1 43 62 104 43 0 0 473 H2LZW5 Uncharacterized protein OS=Oryzias latipes GN=LOC101171901 PE=4 SV=1
128 : K1RQN4_CRAGI 0.44 0.58 2 46 17 61 45 0 0 365 K1RQN4 Placental protein 11 OS=Crassostrea gigas GN=CGI_10007653 PE=4 SV=1
129 : L8Y364_TUPCH 0.44 0.53 3 47 2 46 45 0 0 390 L8Y364 Poly(U)-specific endoribonuclease OS=Tupaia chinensis GN=TREES_T100021303 PE=4 SV=1
130 : M3ZJW3_XIPMA 0.44 0.72 1 43 61 103 43 0 0 485 M3ZJW3 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
131 : M4AVK9_XIPMA 0.44 0.78 4 44 62 102 41 0 0 258 M4AVK9 Uncharacterized protein OS=Xiphophorus maculatus GN=ENDOU (2 of 2) PE=4 SV=1
132 : R0L2P7_ANAPL 0.44 0.64 3 41 6 44 39 0 0 329 R0L2P7 Placental protein 11 (Fragment) OS=Anas platyrhynchos GN=Anapl_13216 PE=4 SV=1
133 : U3IHU8_ANAPL 0.44 0.64 3 41 6 44 39 0 0 329 U3IHU8 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=ENDOU PE=4 SV=1
134 : V3ZQ22_LOTGI 0.44 0.64 3 41 1 39 39 0 0 318 V3ZQ22 Uncharacterized protein (Fragment) OS=Lottia gigantea GN=LOTGIDRAFT_129256 PE=4 SV=1
135 : W5KD78_ASTMX 0.44 0.74 2 40 64 102 39 0 0 396 W5KD78 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
136 : F2UC78_SALR5 0.43 0.53 2 48 690 736 47 0 0 1720 F2UC78 Putative uncharacterized protein OS=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) GN=PTSG_12412 PE=4 SV=1
137 : G3GWW0_CRIGR 0.43 0.62 1 40 36 75 40 0 0 973 G3GWW0 Proteoglycan 4 OS=Cricetulus griseus GN=I79_002245 PE=4 SV=1
138 : G3TUI8_LOXAF 0.43 0.59 1 44 26 69 44 0 0 967 G3TUI8 Uncharacterized protein OS=Loxodonta africana GN=PRG4 PE=4 SV=1
139 : G3UFP8_LOXAF 0.43 0.59 1 44 26 69 44 0 0 423 G3UFP8 Uncharacterized protein OS=Loxodonta africana GN=PRG4 PE=4 SV=1
140 : H2UDC2_TAKRU 0.43 0.70 1 47 47 93 47 0 0 372 H2UDC2 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101064652 PE=4 SV=1
141 : H2UDC3_TAKRU 0.43 0.72 1 47 62 108 47 0 0 387 H2UDC3 Uncharacterized protein OS=Takifugu rubripes GN=LOC101064652 PE=4 SV=1
142 : Q4RJ19_TETNG 0.43 0.70 2 41 52 91 40 0 0 382 Q4RJ19 Chromosome 1 SCAF15039, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00033626001 PE=4 SV=1
143 : Q4SZU5_TETNG 0.43 0.60 1 39 49 88 40 1 1 865 Q4SZU5 Chromosome undetermined SCAF11492, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00009670001 PE=4 SV=1
144 : V9K9M5_CALMI 0.43 0.60 1 39 51 90 40 1 1 906 V9K9M5 Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 OS=Callorhynchus milii PE=2 SV=1
145 : V9KI68_CALMI 0.43 0.60 1 39 51 90 40 1 1 726 V9KI68 Ectonucleotide pyrophosphatase/phosphodiesterase family member 2-like protein (Fragment) OS=Callorhynchus milii PE=2 SV=1
146 : F7HAC3_CALJA 0.42 0.52 3 50 22 69 48 0 0 411 F7HAC3 Uncharacterized protein OS=Callithrix jacchus GN=ENDOU PE=4 SV=1
147 : G3N6I1_GASAC 0.42 0.63 3 45 23 65 43 0 0 388 G3N6I1 Uncharacterized protein OS=Gasterosteus aculeatus GN=ENDOU PE=4 SV=1
148 : H3DAR4_TETNG 0.42 0.65 1 48 62 109 48 0 0 389 H3DAR4 Uncharacterized protein OS=Tetraodon nigroviridis GN=ENDOU PE=4 SV=1
149 : V9L0K9_CALMI 0.42 0.64 4 48 25 69 45 0 0 338 V9L0K9 Poly(U)-specific endoribonuclease-like protein OS=Callorhynchus milii PE=2 SV=1
150 : E9FUM9_DAPPU 0.41 0.68 3 43 171 211 41 0 0 211 E9FUM9 Putative uncharacterized protein OS=Daphnia pulex GN=DAPPUDRAFT_206492 PE=4 SV=1
151 : E9FUN0_DAPPU 0.41 0.63 4 44 76 116 41 0 0 194 E9FUN0 Putative uncharacterized protein OS=Daphnia pulex GN=DAPPUDRAFT_95750 PE=4 SV=1
152 : F6PRX4_XENTR 0.41 0.63 4 44 88 128 41 0 0 409 F6PRX4 Uncharacterized protein (Fragment) OS=Xenopus tropicalis PE=4 SV=1
153 : H0YZI3_TAEGU 0.41 0.63 2 47 42 87 46 0 0 396 H0YZI3 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=PRG4 PE=4 SV=1
154 : H2RZ66_TAKRU 0.41 0.63 2 41 52 92 41 1 1 867 H2RZ66 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101064921 PE=4 SV=1
155 : H2RZ67_TAKRU 0.41 0.63 2 41 51 91 41 1 1 870 H2RZ67 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101064921 PE=4 SV=1
156 : M7BLM7_CHEMY 0.41 0.55 1 49 13 61 49 0 0 1459 M7BLM7 Proteoglycan 4 OS=Chelonia mydas GN=UY3_04110 PE=4 SV=1
157 : R4GKH8_CHICK 0.41 0.59 4 44 36 76 41 0 0 569 R4GKH8 Uncharacterized protein OS=Gallus gallus PE=4 SV=1
158 : E2RUH1_CHICK 0.40 0.53 3 47 102 146 45 0 0 372 E2RUH1 Ectonucleotide pyrophosphatase/phosphodiesterase 2, short form OS=Gallus gallus GN=Enpp2 PE=2 SV=1
159 : G5BWC9_HETGA 0.40 0.58 3 47 22 66 45 0 0 399 G5BWC9 Placental protein 11 OS=Heterocephalus glaber GN=GW7_06997 PE=4 SV=1
160 : H2N0I2_ORYLA 0.40 0.62 1 48 62 109 48 0 0 384 H2N0I2 Uncharacterized protein OS=Oryzias latipes GN=LOC101159794 PE=4 SV=1
161 : H3DL89_TETNG 0.40 0.64 1 45 62 106 45 0 0 501 H3DL89 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
162 : S9XX88_9CETA 0.40 0.53 3 47 94 138 45 0 0 583 S9XX88 Uncharacterized protein OS=Camelus ferus GN=CB1_000902024 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 220 109 56 DDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDEDDDDDDDDDDDDDED E DD G
2 2 A Q - 0 0 175 134 63 QQQQQQQQQQQQQQQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQAQEEEAE EEEEEEEAEEE
3 3 A E - 0 0 101 151 51 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEEEEEEEEEEEEEEEEEDDDED DDEEEEEEEED
4 4 A S - 0 0 36 163 9 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A a S >> S+ 0 0 4 163 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A K T 34 S+ 0 0 180 163 68 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQSKEEEEEVEEAAALLEVAV
7 7 A G T 34 S+ 0 0 87 163 18 GGGGGGGGGGGGGGGGGDGGGGDDDGGGDDGDYGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
8 8 A R T X4 + 0 0 48 163 2 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHRRRRRRRRRHRR
9 9 A a T 3< S- 0 0 55 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A T T 3 S+ 0 0 34 163 84 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTQLTTDDDDDEEDFFFEEDEFE
11 11 A E < - 0 0 71 163 35 EEEEEEEEEEEEEEEEEEDEEEEEEEEDEEDEEEEDDEQQDDEEEQQQQEEEEEEEEEEEESSSNNKDSE
12 12 A G - 0 0 36 162 58 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
13 13 A F + 0 0 81 163 22 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
14 14 A N > - 0 0 81 163 63 NNNNNNNNNNNNNNNNNNITNTNNNSNINNINNNNIINVVIINNNMMMMNNNNNNNNNNDDDDDDDDDDN
15 15 A V T 3 S+ 0 0 80 163 76 VVVAAAAAAAAAASAAAAAAAAQAPVAAPAAAPAAAAAAAAAAAAAAAASSSAAAASASASGGGAAAAGS
16 16 A D T 3 S+ 0 0 151 163 68 DDDDDDDDDDNDEDDDDDEDDDENEDDEEDENDDDEEDNNEETTTSSSSKKNTMLMLLKGGNNNQQAQNK
17 17 A K S < S- 0 0 91 163 62 KKKKKKKKKKKKKRRKRRRRRRKRKKRRKRRRKRRRRKKKRRRRRKKKKKKKRKKKQKEHRKKKKKRRKE
18 18 A K S S+ 0 0 191 162 68 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
19 19 A b - 0 0 8 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A Q + 0 0 1 163 45 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
21 21 A b + 0 0 2 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22 22 A D S > S- 0 0 3 163 14 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
23 23 A E T 3 S+ 0 0 141 163 82 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDETNTTTTTTIIISSDAIT
24 24 A L T > S+ 0 0 88 163 78 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMLLLL
25 25 A c G X>>S+ 0 0 4 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A S G 345S+ 0 0 87 163 79 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTTSSSSNNNVNKVVVVVKKATVK
27 27 A Y G <45S+ 0 0 177 163 88 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHHYYYYHY
28 28 A Y T <45S- 0 0 95 163 20 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
29 29 A Q T <5S+ 0 0 170 163 74 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQQQQQQQQQQQQQQQQKQQQQQQQQQQEEERRQQEQ
30 30 A S < + 0 0 39 163 57 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
31 31 A c - 0 0 38 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
32 32 A d > - 0 0 18 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
33 33 A T T 3 S+ 0 0 133 163 79 TTTTTTTTTTTTSAEVEATEEEYAYSETYETAMSAAAAAAAAAAAVVVAIISASSSSSASSIIISSESIA
34 34 A D T >> S+ 0 0 83 163 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDDDDDDDDDDDDDD
35 35 A Y H <>> + 0 0 47 163 3 YYYYYYYYYYYYYYYYYYYYYYFYFYYYFYYYYYYYYYYYYYFFFYYYYYYYFYYYYYFYYYYYYYYYYF
36 36 A T H 345S+ 0 0 98 163 88 TTTTTTTTTTVIMKVMVVVVVVVAVVVVVVVAMIMVVIVVVVMMMMMMMLAIMSSSSSESSMMMMMFVME
37 37 A A H <45S+ 0 0 76 163 74 AAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAAATAAAAAAAEEEEEEAATTTTTTTTSSSPPTSST
38 38 A E H <5S+ 0 0 86 163 87 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQEEEEEQQQQIVTAVVVVVTVVVVVVVTAVT
39 39 A d T <5S+ 0 0 0 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 40 A K < - 0 0 116 144 66 KKKKKKKKKKKKKKKKKKKKKKKKKQKKKKKKKNKKKKKKKKKKKKKKKKRKWKKKKKNKKKKK RKKN
41 41 A P - 0 0 31 130 67 PPPPPPPPPPPPPPPTPPPPPPPPPPPPPPPPPPHPPPPPPPPPPPPPPPPPPAAATARAAPPP SPPR
42 42 A Q + 0 0 113 119 63 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQQQQQQQQQQQQQQQQQQPKKKKKKKKKKK KKKK
43 43 A V - 0 0 120 116 58 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVEEE EVEV
44 44 A T - 0 0 80 111 56 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTT TTTS
45 45 A R - 0 0 193 100 42 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RRRR
46 46 A G S S+ 0 0 56 97 24 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGG
47 47 A D S S+ 0 0 105 95 25 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD DDDD
48 48 A V + 0 0 68 85 34 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAVVVVVVVVVVVV VMVV
49 49 A F + 0 0 160 81 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLFFFFFFFFFFFFFFFFFFFFFF FFFF
50 50 A T 0 0 114 72 66 TTTTTTTTTTTTTTTTTT TATTTTTT TT TVTT TTT HHHTTTTAAAHAAAAATAAEEE AET
51 51 A M 0 0 182 67 20 MMMMMMMMMMML LLML LLLMMMLL ML MM L LMM LLLMMMMLLLLLLLLLLLLIII FIL
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A D 0 0 220 109 56 D D AAAAAAQSAA AA AASAS A A DQQ QGG QQGS SDTTEDT E NDDG
2 2 A Q - 0 0 175 134 63 QEQEEQEEEDEEDKK EEAEEKEKAE E VEEE ESS EEAA AVKKEAQA K RQELLS
3 3 A E - 0 0 101 151 51 GEGEEEEEEEEEEEEEEEQEEDEDQE EE DEETLLL LTTELLTGEGSNNLQNDEN DDDGELSST
4 4 A S - 0 0 36 163 9 SSSTSSSSSSSSSSSSTTSTTSTSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A a S >> S+ 0 0 4 163 2 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A K T 34 S+ 0 0 180 163 68 VVVVALIIIMVLLMMMVVQEEKEKQEKKKRANKRRAKKKAAKKKRKKKKAKEKKKRKAAKNKKVRAKAAK
7 7 A G T 34 S+ 0 0 87 163 18 GGGGGDDEEGGGGEEGGGGGGGGGGGGGGGSSGGGGGGGGGGGGGGGGGSGGGGGGGGSGGGGGGGGGGG
8 8 A R T X4 + 0 0 48 163 2 RHRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
9 9 A a T 3< S- 0 0 55 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A T T 3 S+ 0 0 34 163 84 AEADFEDEEEGEEEEEKKGRRGRGGRFFSGNGGGGGFFFGGFGGGFFDFNFGGGFGGGNGGEENGFFGGG
11 11 A E < - 0 0 71 163 35 DDDGSNSNNNSNNNNNDDESSESEESEEESEEEEEEEEEEEEEEEEEEEEEEEEEEEAEEEEEKESEEEE
12 12 A G - 0 0 36 162 58 GGGGGGGGGG.GGGGGGGVGGPGPVGAASFKSTPPGSSSGGSKNPSSKLKLGSSTSTGHTSPPHELSGGK
13 13 A F + 0 0 81 163 22 FFFFFFFFFFFYFFFFFFFFFFFFFFFFFNFYFFFFFFFYYFYYFFFYEFEYFFFFFLFFYYYLFPFYYY
14 14 A N > - 0 0 81 163 63 NNNDDDDDDDNDDDDDDDRDDNDNRDEEETNNQRRSAEESTENNRAANEDENKKVRKDNKNSSDQEASSN
15 15 A V T 3 S+ 0 0 80 163 76 DADAGSAAASPSAAASSSRPPRPRRPRRRRRSRRRARRRRRRSSRRRSARARRRRRRSRRSKKNRPRRRS
16 16 A D T 3 S+ 0 0 151 163 68 TQTKNQTTTRRQLTTRSSGTTGTGGTGGGSDGGGGgGGGDDGQQGGGQkDkQGGGGGSDGQEESGGGDDQ
17 17 A K S < S- 0 0 91 163 62 HRHKKRKKKMSKKKKMKKKKKNKNKKRRRKANKRRkRRRAARNNRRRNpApHRRRRRKARNDDFRDRAAN
18 18 A K S S+ 0 0 191 162 68 KKKKKKQSSKKQNSSKKKLKKPKPLKEEE.APQQQMEEEAAEKKQEEKGAGGLLELLTTQPEENESEAAK
19 19 A b - 0 0 8 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A Q + 0 0 1 163 45 QQQQQQQQQQQQQQQQQQEQQHQHEQDDDQQHYEELDDDNNDHHEDDHRQRQSSDETQQNHHHQEFDNNH
21 21 A b + 0 0 2 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
22 22 A D S > S- 0 0 3 163 14 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDNNDDDNDDDDDDDDDNDDNDDNDDDDDN
23 23 A E T 3 S+ 0 0 141 163 82 NANSISSSSSSSSSSSMMPRRIRIPRAANHRDVSSLSAAYYASSSSSSNRNSSSAPSTRPSAAYPRSYYS
24 24 A L T > S+ 0 0 88 163 78 LLLMIMLMMMMMMMMMMMLMMDMDLMDDQMRLEGGDQQDNNQKKGQQKLRLNDDDDDNRELEEADFQNNK
25 25 A c G X>>S+ 0 0 4 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A S G 345S+ 0 0 87 163 79 HVHKVTKTTKTKKTTKKKVKKVKVVKEEKLHSSVVPKKKQQKSTVKKSKPKLIIESIASSTEESTGRQQS
27 27 A Y G <45S+ 0 0 177 163 88 FYFYHYYYYYYYYYYYYYLYYSYSLYRRKYRQRLLHQKKYYKQQLQQRTRTLKKKQKTRKQSSKLDEYYQ
28 28 A Y T <45S- 0 0 95 163 20 YYYYFYYYYYYYYYYYYYYYYYYYYYYYYYHYYHHFYYYYYYYYHYYYYHYYYYYFFYHFYHHYYLFYYY
29 29 A Q T <5S+ 0 0 170 163 74 KGKQEKRKKRERKRRRGGNGGNGNNGGGGGGSNNNRGDGMMDNSNGGNYGYANNGSKGGNNYYHNGGMMN
30 30 A S < + 0 0 39 163 57 SSSSSSSSSSSSSSSSSSTSSQSQTSKKKSDNQSSDKKKEEKNNSKKNSDSEQQKTQDDQNNNDTDKEEN
31 31 A c - 0 0 38 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
32 32 A d > - 0 0 18 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
33 33 A T T 3 S+ 0 0 133 163 79 VSVIIFTTTYVSSSSYQQHEEPEPHEPPPRETPPPPAPSPPPSSPAASSESPSSPDPSEPSEESSPDPPS
34 34 A D T >> S+ 0 0 83 163 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
35 35 A Y H <>> + 0 0 47 163 3 YYYYYFYYYFFYFYYFFFYFFYFYYFYYYFYYYYYYYYYYYYYYYYYYFYFYYYYHYYYYYYYYYYYFFY
36 36 A T H 345S+ 0 0 98 163 88 SASDLEAEEEYEEEEEEEKDDEDEKDAADDEDRSSGDEEKKEAASDDTEEDQKKQQKYEKSYYNHGDKKA
37 37 A A H <45S+ 0 0 76 163 74 TSTTTASSSVTPSSSVTTLTTSTSLTKKDAHSKTTESSSKKSDDTSSDEQDTNNKSTANKDEETGASKKD
38 38 A E H <5S+ 0 0 86 163 87 VTVVLILLLTIVTLLTTTNTTMTMNTHHFVLQHHHLFFFVVFLLHFFIHLHIHHHLQLLHYHHEQLFVVL
39 39 A d T <5S+ 0 0 0 163 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 40 A K < - 0 0 116 144 66 RKRRK DRR NHHGQQRRR R SRKKEPSSTDD ETT D DEED T VDDE ETTDSRRHEKETTD
41 41 A P - 0 0 31 130 67 L PP N MSSPTT T TEEAKGGIAA VV N A S A EAA SQAETPPG P VVT
42 42 A Q + 0 0 113 119 63 K KK TKKQKK K KAASKEGE EE D E DQQ EQEND A EEK
43 43 A V - 0 0 120 116 58 V VE SIILII I IHHVIAVA LL A L VTKVV L LLI
44 44 A T - 0 0 80 111 56 T VQ KAA AA A ATT SPDK SS G S CD A T SSS
45 45 A R - 0 0 193 100 42 R RR RRR RR R R RRPI G SP S A
46 46 A G S S+ 0 0 56 97 24 G GG GG GG G G GGGP G GE T G
47 47 A D S S+ 0 0 105 95 25 D DD DD DD D D DG D G E T S
48 48 A V + 0 0 68 85 34 M VV VV MM M M T T
49 49 A F + 0 0 160 81 0 F FF FF FF F F F
50 50 A T 0 0 114 72 66 A QE DD DD D D A
51 51 A M 0 0 182 67 20 F VI LL LL L L
## ALIGNMENTS 141 - 162
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 1 A D 0 0 220 109 56 G SSS G E AT
2 2 A Q - 0 0 175 134 63 SKAAA S AHHE AK
3 3 A E - 0 0 101 151 51 TNGGGEDT N ATTL EETNE
4 4 A S - 0 0 36 163 9 SSSSSSSSSSSSSSSSSCSSSC
5 5 A a S >> S+ 0 0 4 163 2 CCCCCCCCCCCCCCCCCTCCCT
6 6 A K T 34 S+ 0 0 180 163 68 KKQRRAQKEQDKARRKTKASKK
7 7 A G T 34 S+ 0 0 87 163 18 GGGGGSGGGGGGGNNGGDSGGD
8 8 A R T X4 + 0 0 48 163 2 RRRRRRRRRRRRRRRRRRRRRR
9 9 A a T 3< S- 0 0 55 163 0 CCCCCCCCCCCCCCCCCCCCCC
10 10 A T T 3 S+ 0 0 34 163 84 GGFFFNGGGSSTFYYFGGSGGG
11 11 A E < - 0 0 71 163 35 EEEEEEYEEAAEEEEEEEEEEE
12 12 A G - 0 0 36 162 58 KGLLLKGNSAAKAAATGTQQGV
13 13 A F + 0 0 81 163 22 YFEQQFTYYYYYFFFFYRFYFR
14 14 A N > - 0 0 81 163 63 NREEENDNNNDNEDDVSNDNRN
15 15 A V T 3 S+ 0 0 80 163 76 SRAAARNSPNNKRDDRRDRSRE
16 16 A D T 3 S+ 0 0 151 163 68 QGkttDGQNKKKGeeGEDDQGD
17 17 A K S < S- 0 0 91 163 62 NRpppAANDWWNRppRHNSNRN
18 18 A K S S+ 0 0 191 162 68 KRGNNASKLPPSEGGEVAAPRA
19 19 A b - 0 0 8 163 0 CCCCCCCCCCCCCCCCCCCCCC
20 20 A Q + 0 0 1 163 45 HSRRRQQHHQQHDRRDHHQHSH
21 21 A b + 0 0 2 163 0 CCCCCCCCCCCCCCCCCCCCCC
22 22 A D S > S- 0 0 3 163 14 NDDDDDNNNNNNDDDDDSDNDS
23 23 A E T 3 S+ 0 0 141 163 82 SPNNNRSSSVVKAEEAYEHSPE
24 24 A L T > S+ 0 0 88 163 78 KDLLLRSKKDDKDSSDSDRLDD
25 25 A c G X>>S+ 0 0 4 163 0 CCCCCCCCCCCCCCCCCCCCCC
26 26 A S G 345S+ 0 0 87 163 79 SQKKKPETSPPDEKKEQLPSQL
27 27 A Y G <45S+ 0 0 177 163 88 QKTSSRRQRSSKRAAKHSEQKA
28 28 A Y T <45S- 0 0 95 163 20 YFYYYHFYYYYFYTTYYRHYFK
29 29 A Q T <5S+ 0 0 170 163 74 NKYNNGRSNGGGGNNGKGGNKG
30 30 A S < + 0 0 39 163 57 NQSSSDDNNNNNKSSKEDDNQD
31 31 A c - 0 0 38 163 0 CCCCCCCCCCCCCCCCCCCCCC
32 32 A d > - 0 0 18 163 0 CCCCCCCCCCCCCCCCCCCCCC
33 33 A T T 3 S+ 0 0 133 163 79 SSSLLESSENSSPYYPPTDSST
34 34 A D T >> S+ 0 0 83 163 2 DDDDDDDDDDDDDDDDDNDDDN
35 35 A Y H <>> + 0 0 47 163 3 YFFFFYYYYYYYYFFYFYYYFY
36 36 A T H 345S+ 0 0 98 163 88 AQDDDKTATSPGAFFPNQESQQ
37 37 A A H <45S+ 0 0 76 163 74 DTEQQHEDLAATEDDKKVLQTV
38 38 A E H <5S+ 0 0 86 163 87 LYHLLLKLILLAHLLHVVLFYV
39 39 A d T <5S+ 0 0 0 163 0 CCCCCCCCCCCCCCCCCCCCCC
40 40 A K < - 0 0 116 144 66 DD TKGGLQGKKKETKADDK
41 41 A P - 0 0 31 130 67 SA EAAEAGGEAAEGGASAG
42 42 A Q + 0 0 113 119 63 K DGSPGVKE AAEESAE
43 43 A V - 0 0 120 116 58 I HAAIITAQ LVTEAES
44 44 A T - 0 0 80 111 56 S KTGT TNT TSHDGHH
45 45 A R - 0 0 193 100 42 A ESGD K T WSKRW
46 46 A G S S+ 0 0 56 97 24 G S GA Q K VTG V
47 47 A D S S+ 0 0 105 95 25 S E SE N P DES D
48 48 A V + 0 0 68 85 34 P VT S A
49 49 A F + 0 0 160 81 0 F F
50 50 A T 0 0 114 72 66 P
51 51 A M 0 0 182 67 20
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 6 15 0 7 4 0 0 0 0 6 6 1 55 109 0 0 1.479 49 0.43
2 2 A 1 1 0 0 0 0 0 0 11 0 4 0 0 1 1 7 43 28 0 1 134 0 0 1.584 52 0.37
3 3 A 0 6 0 0 0 0 0 5 1 0 2 7 0 0 0 0 2 62 5 11 151 0 0 1.379 46 0.49
4 4 A 0 0 0 0 0 0 0 0 0 0 94 4 1 0 0 0 0 0 0 0 163 0 0 0.243 8 0.91
5 5 A 0 0 0 0 0 0 0 0 0 0 0 1 99 0 0 0 0 0 0 0 163 0 0 0.066 2 0.97
6 6 A 7 3 2 2 0 0 0 0 11 0 1 1 0 0 6 52 4 9 1 1 163 0 0 1.724 57 0.32
7 7 A 0 0 0 0 0 0 1 85 0 0 4 0 0 0 0 0 0 2 2 7 163 0 0 0.640 21 0.81
8 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 98 0 0 0 0 0 163 0 0 0.092 3 0.98
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
10 10 A 0 1 0 0 14 0 1 23 1 0 2 31 0 0 2 1 1 11 4 6 163 0 0 1.936 64 0.15
11 11 A 0 0 0 0 0 0 1 1 2 0 8 0 0 0 0 1 4 69 7 8 163 1 0 1.151 38 0.65
12 12 A 2 4 0 0 1 0 0 64 4 4 9 4 0 1 0 5 1 1 1 0 162 0 0 1.463 48 0.42
13 13 A 0 1 0 0 79 0 13 0 0 1 0 1 0 0 1 0 1 2 1 0 163 0 0 0.785 26 0.78
14 14 A 2 0 4 2 0 0 0 0 2 0 5 2 0 0 5 2 1 8 42 22 163 0 0 1.839 61 0.37
15 15 A 3 0 0 0 0 0 0 3 39 6 15 0 0 0 25 2 1 1 2 3 163 0 0 1.715 57 0.23
16 16 A 0 2 0 1 0 0 0 21 1 0 6 10 0 0 2 7 9 10 7 23 163 0 8 2.137 71 0.32
17 17 A 0 0 0 1 1 1 0 0 6 4 1 0 0 3 33 37 1 1 9 2 163 1 0 1.715 57 0.38
18 18 A 1 4 0 1 0 0 0 4 6 4 4 1 0 0 1 57 4 10 2 0 162 0 0 1.650 55 0.32
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
20 20 A 0 1 0 0 1 0 1 0 0 0 2 1 0 11 4 0 64 4 3 8 163 0 0 1.322 44 0.54
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
22 22 A 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 10 89 163 0 0 0.386 12 0.86
23 23 A 2 1 4 1 0 0 4 0 7 4 21 6 0 1 6 1 0 35 6 2 163 0 0 2.079 69 0.18
24 24 A 0 51 1 12 1 0 0 2 1 0 2 0 0 0 3 5 4 2 4 12 163 0 0 1.719 57 0.21
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
26 26 A 10 2 2 0 0 0 0 1 1 4 38 9 0 2 1 18 4 5 2 1 163 0 0 2.008 67 0.20
27 27 A 0 4 0 0 1 0 56 0 2 0 6 2 0 4 7 9 7 1 0 1 163 0 0 1.644 54 0.11
28 28 A 0 1 0 0 6 0 85 0 0 0 0 1 0 6 1 1 0 0 0 0 163 0 0 0.631 21 0.79
29 29 A 0 0 0 2 0 0 3 19 1 0 2 0 0 1 6 7 39 4 14 1 163 0 0 1.849 61 0.25
30 30 A 0 0 0 0 0 0 0 0 0 0 64 2 0 0 0 8 6 4 9 7 163 0 0 1.272 42 0.43
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
33 33 A 4 1 5 1 1 0 4 0 13 15 25 13 0 1 1 0 1 12 1 2 163 0 0 2.199 73 0.20
34 34 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 98 163 0 0 0.103 3 0.98
35 35 A 0 0 0 0 20 0 79 0 0 0 0 0 0 1 0 0 0 0 0 0 163 0 0 0.540 18 0.96
36 36 A 14 1 2 11 2 0 2 2 8 1 9 9 0 1 1 7 4 14 1 10 163 0 0 2.537 84 0.12
37 37 A 2 2 0 0 0 0 0 1 31 2 14 20 0 1 0 7 2 8 2 7 163 0 0 2.034 67 0.25
38 38 A 16 16 4 1 6 0 2 0 2 0 0 9 0 10 0 1 6 28 1 0 163 0 0 2.115 70 0.13
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 163 0 0 0.000 0 1.00
40 40 A 1 1 0 0 0 1 0 3 1 1 3 7 0 2 10 51 3 6 3 10 144 0 0 1.807 60 0.34
41 41 A 3 1 1 1 0 0 0 6 17 48 5 6 0 1 2 1 1 6 2 0 130 0 0 1.784 59 0.32
42 42 A 1 0 0 0 0 0 0 3 5 2 3 1 0 0 0 24 47 11 1 3 119 0 0 1.580 52 0.36
43 43 A 62 7 9 0 0 0 0 0 6 0 2 3 0 3 0 1 1 7 0 0 116 0 0 1.399 46 0.42
44 44 A 1 0 0 0 0 0 0 3 6 1 10 68 1 3 0 3 1 0 1 3 111 0 0 1.265 42 0.44
45 45 A 0 0 1 0 0 2 0 2 2 2 4 1 0 0 82 2 0 1 0 1 100 0 0 0.867 28 0.57
46 46 A 2 0 0 0 0 0 0 90 1 1 1 2 0 0 0 1 1 1 0 0 97 0 0 0.541 18 0.76
47 47 A 0 0 0 0 0 0 0 2 0 1 4 1 0 0 0 0 0 4 1 86 95 0 0 0.619 20 0.74
48 48 A 85 0 0 7 0 0 0 0 2 1 1 4 0 0 0 0 0 0 0 0 85 0 0 0.639 21 0.65
49 49 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0.116 3 0.99
50 50 A 1 0 0 0 0 0 0 0 19 1 0 56 0 6 0 0 1 7 0 8 72 0 0 1.376 45 0.33
51 51 A 1 51 7 37 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 67 0 0 1.073 35 0.80
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
106 17 150 2 gNDk
119 17 65 1 kPp
121 17 20 1 kPp
143 17 65 1 kPp
144 17 67 1 tPp
145 17 67 1 tPp
154 16 67 1 eTp
155 16 66 1 eTp
//