Complet list of 1ss2 hssp file
Complete list of 1ss2.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1SS2
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER SIGNALING PROTEIN 23-MAR-04 1SS2
COMPND MOL_ID: 1; MOLECULE: GAMMA-AMINOBUTYRIC ACID TYPE B RECEPTOR, SUBUNIT
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; ORGANISM_COMMON: NO
AUTHOR S.BLEIN,D.UHRIN,B.O.SMITH,J.H.WHITE,P.N.BARLOW
DBREF 1SS2 A 96 159 UNP Q9Z0U4 GABR1_RAT 96 159
SEQLENGTH 68
NCHAIN 1 chain(s) in 1SS2 data set
NALIGN 60
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B5D5S8_RAT 1.00 1.00 5 66 96 157 62 0 0 229 B5D5S8 GABA-B1j OS=Rattus norvegicus GN=Gabbr1 PE=2 SV=1
2 : F7FE05_RAT 1.00 1.00 5 67 96 158 63 0 0 991 F7FE05 Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus norvegicus GN=Gabbr1 PE=4 SV=1
3 : GABR1_RAT 1SS2 1.00 1.00 5 68 96 159 64 0 0 991 Q9Z0U4 Gamma-aminobutyric acid type B receptor subunit 1 OS=Rattus norvegicus GN=Gabbr1 PE=1 SV=1
4 : Q5CC43_RAT 1.00 1.00 5 66 96 157 62 0 0 206 Q5CC43 GABA-BR1i receptor OS=Rattus norvegicus PE=2 SV=1
5 : Q5CC44_RAT 1.00 1.00 5 68 96 159 64 0 0 203 Q5CC44 GABA-BR1h receptor OS=Rattus norvegicus PE=2 SV=1
6 : Q6MFX8_RAT 1.00 1.00 5 68 96 159 64 0 0 960 Q6MFX8 Gamma-aminobutyric acid (GABA) B receptor 1 OS=Rattus norvegicus GN=Gabbr1 PE=4 SV=1
7 : Q920D8_RAT 1.00 1.00 5 66 96 157 62 0 0 239 Q920D8 GABA B receptor 1g OS=Rattus norvegicus PE=2 SV=1
8 : Q924M0_RAT 1.00 1.00 5 66 96 157 62 0 0 984 Q924M0 GABA type B receptor 1f OS=Rattus norvegicus GN=Gabbr1 PE=2 SV=1
9 : C9JZG6_HUMAN 0.97 1.00 5 64 97 156 60 0 0 156 C9JZG6 Gamma-aminobutyric acid type B receptor subunit 1 (Fragment) OS=Homo sapiens GN=GABBR1 PE=2 SV=1
10 : F6PPW6_HORSE 0.97 1.00 5 68 69 132 64 0 0 931 F6PPW6 Uncharacterized protein (Fragment) OS=Equus caballus GN=GABBR1 PE=4 SV=1
11 : F6PYU4_HORSE 0.97 1.00 5 68 69 132 64 0 0 959 F6PYU4 Uncharacterized protein (Fragment) OS=Equus caballus GN=GABBR1 PE=4 SV=1
12 : F7CCU5_MACMU 0.97 1.00 5 66 90 151 62 0 0 954 F7CCU5 Uncharacterized protein OS=Macaca mulatta GN=UBD PE=4 SV=1
13 : F7CCW0_MACMU 0.97 1.00 5 66 90 151 62 0 0 571 F7CCW0 Uncharacterized protein OS=Macaca mulatta GN=UBD PE=4 SV=1
14 : F7DIF5_MACMU 0.97 1.00 5 66 90 151 62 0 0 927 F7DIF5 Uncharacterized protein OS=Macaca mulatta GN=UBD PE=4 SV=1
15 : F8WDC0_HUMAN 0.97 1.00 5 66 97 158 62 0 0 193 F8WDC0 Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens GN=GABBR1 PE=2 SV=1
16 : G3QPA0_GORGO 0.97 1.00 5 68 88 151 64 0 0 952 G3QPA0 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101136130 PE=4 SV=1
17 : G3S7N5_GORGO 0.97 1.00 5 68 97 160 64 0 0 961 G3S7N5 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101136130 PE=4 SV=1
18 : G5AKF4_HETGA 0.97 1.00 5 68 91 154 64 0 0 955 G5AKF4 Gamma-aminobutyric acid type B receptor subunit 1 (Fragment) OS=Heterocephalus glaber GN=GW7_10280 PE=4 SV=1
19 : G7MRD8_MACMU 0.97 1.00 5 66 98 159 62 0 0 927 G7MRD8 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_14652 PE=4 SV=1
20 : G7P3V5_MACFA 0.97 1.00 5 66 98 159 62 0 0 927 G7P3V5 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_13395 PE=4 SV=1
21 : GABR1_HUMAN 4MR8 0.97 1.00 5 68 97 160 64 0 0 961 Q9UBS5 Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens GN=GABBR1 PE=1 SV=1
22 : GABR1_MOUSE 0.97 1.00 5 68 96 159 64 0 0 960 Q9WV18 Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus GN=Gabbr1 PE=1 SV=1
23 : H0WFP4_OTOGA 0.97 1.00 5 68 97 160 64 0 0 961 H0WFP4 Uncharacterized protein (Fragment) OS=Otolemur garnettii GN=GABBR1 PE=4 SV=1
24 : H2PIC8_PONAB 0.97 1.00 5 67 68 130 63 0 0 710 H2PIC8 Uncharacterized protein (Fragment) OS=Pongo abelii GN=GABBR1 PE=4 SV=1
25 : H9FSF4_MACMU 0.97 1.00 5 68 97 160 64 0 0 961 H9FSF4 Gamma-aminobutyric acid type B receptor subunit 1 isoform a OS=Macaca mulatta GN=GABBR1 PE=2 SV=1
26 : H9KYI3_CALJA 0.97 1.00 5 66 96 157 62 0 0 187 H9KYI3 Uncharacterized protein OS=Callithrix jacchus PE=4 SV=1
27 : I3M0I2_SPETR 0.97 1.00 5 68 96 159 64 0 0 960 I3M0I2 Uncharacterized protein (Fragment) OS=Spermophilus tridecemlineatus GN=GABBR1 PE=4 SV=1
28 : Q3TWR2_MOUSE 0.97 1.00 5 66 96 157 62 0 0 229 Q3TWR2 Gamma-aminobutyric acid type B receptor subunit 1 OS=Mus musculus GN=Gabbr1 PE=2 SV=1
29 : W5Q5V6_SHEEP 0.97 1.00 5 68 69 132 64 0 0 931 W5Q5V6 Uncharacterized protein (Fragment) OS=Ovis aries GN=GABBR1 PE=4 SV=1
30 : F1MF15_BOVIN 0.95 0.98 5 68 97 160 64 0 0 961 F1MF15 Uncharacterized protein OS=Bos taurus GN=GABBR1 PE=4 SV=1
31 : F1P6E5_CANFA 0.95 1.00 5 68 69 132 64 0 0 929 F1P6E5 Uncharacterized protein (Fragment) OS=Canis familiaris GN=GABBR1 PE=4 SV=2
32 : F1RYH7_PIG 0.95 1.00 5 68 96 159 64 0 0 577 F1RYH7 Gamma-aminobutyric acid (GABA) B receptor 1 isoform a OS=Sus scrofa GN=GABBR1 PE=4 SV=2
33 : G1T9S7_RABIT 0.95 1.00 5 68 100 163 64 0 0 964 G1T9S7 Uncharacterized protein OS=Oryctolagus cuniculus GN=GABBR1 PE=4 SV=2
34 : K7GP86_PIG 0.95 1.00 5 68 96 159 64 0 0 960 K7GP86 Uncharacterized protein OS=Sus scrofa GN=GABBR1 PE=4 SV=1
35 : L8HMZ3_9CETA 0.95 0.98 5 68 84 147 64 0 0 953 L8HMZ3 Gamma-aminobutyric acid type B receptor subunit 1 (Fragment) OS=Bos mutus GN=M91_05122 PE=4 SV=1
36 : M1ESZ5_MUSPF 0.95 1.00 6 66 69 129 61 0 0 129 M1ESZ5 Gamma-aminobutyric acid B receptor, 1 (Fragment) OS=Mustela putorius furo PE=2 SV=1
37 : M3Y7R5_MUSPF 0.95 1.00 5 68 8 71 64 0 0 872 M3Y7R5 Uncharacterized protein OS=Mustela putorius furo GN=GABBR1 PE=4 SV=1
38 : A6QPN0_BOVIN 0.94 0.97 5 68 97 160 64 0 0 961 A6QPN0 GABBR1 protein OS=Bos taurus GN=GABBR1 PE=2 SV=1
39 : G3TIX6_LOXAF 0.94 1.00 5 68 71 134 64 0 0 933 G3TIX6 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=GABBR1 PE=4 SV=1
40 : G3TSB5_LOXAF 0.94 1.00 5 68 71 134 64 0 0 933 G3TSB5 Uncharacterized protein (Fragment) OS=Loxodonta africana GN=GABBR1 PE=4 SV=1
41 : M3WPP4_FELCA 0.94 1.00 5 68 76 139 64 0 0 929 M3WPP4 Uncharacterized protein (Fragment) OS=Felis catus GN=GABBR1 PE=4 SV=1
42 : S9XCE2_9CETA 0.94 0.98 5 68 81 144 64 0 0 975 S9XCE2 Gamma-aminobutyric acid type B receptor subunit 1 isoform a OS=Camelus ferus GN=CB1_085562010 PE=4 SV=1
43 : U6DVN9_NEOVI 0.93 1.00 6 66 70 130 61 0 0 130 U6DVN9 Gamma-aminobutyric acid (GABA) B receptor, 1 (Fragment) OS=Neovison vison GN=F8WDC0 PE=2 SV=1
44 : G1MCJ2_AILME 0.92 1.00 5 68 97 160 64 0 0 961 G1MCJ2 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=GABBR1 PE=4 SV=1
45 : L5KIJ5_PTEAL 0.92 0.98 5 66 8 69 62 0 0 865 L5KIJ5 Gamma-aminobutyric acid type B receptor subunit 1 OS=Pteropus alecto GN=PAL_GLEAN10001316 PE=4 SV=1
46 : L9J9A9_TUPCH 0.92 0.98 5 66 127 188 62 0 0 984 L9J9A9 Gamma-aminobutyric acid type B receptor subunit 1 OS=Tupaia chinensis GN=TREES_T100015259 PE=4 SV=1
47 : L5M5X6_MYODS 0.90 0.94 5 66 8 69 62 0 0 822 L5M5X6 Gamma-aminobutyric acid type B receptor subunit 1 OS=Myotis davidii GN=MDA_GLEAN10002423 PE=4 SV=1
48 : F6YV00_MONDO 0.76 0.89 5 66 94 155 62 0 0 865 F6YV00 Uncharacterized protein OS=Monodelphis domestica GN=GABBR1 PE=4 SV=2
49 : G3VPG3_SARHA 0.75 0.89 5 68 96 159 64 0 0 964 G3VPG3 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=GABBR1 PE=4 SV=1
50 : K7EH01_ORNAN 0.60 0.84 6 68 17 79 63 0 0 112 K7EH01 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus PE=4 SV=1
51 : B7ZU67_XENTR 0.46 0.72 5 68 94 158 65 1 1 987 B7ZU67 Uncharacterized protein OS=Xenopus tropicalis PE=2 SV=1
52 : F6VRQ8_XENTR 0.46 0.72 5 68 94 158 65 1 1 981 F6VRQ8 Uncharacterized protein OS=Xenopus tropicalis GN=gabbr1 PE=4 SV=1
53 : F6VRU7_XENTR 0.46 0.73 5 66 95 157 63 1 1 995 F6VRU7 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=gabbr1 PE=4 SV=1
54 : M7B6B1_CHEMY 0.46 0.78 5 66 134 196 63 1 1 1090 M7B6B1 Gamma-aminobutyric acid type B receptor subunit 1 OS=Chelonia mydas GN=UY3_09346 PE=4 SV=1
55 : G1KKP4_ANOCA 0.44 0.78 5 67 101 164 64 1 1 994 G1KKP4 Uncharacterized protein OS=Anolis carolinensis GN=GABBR1 PE=4 SV=2
56 : H3A4Q0_LATCH 0.44 0.71 5 66 71 133 63 1 1 972 H3A4Q0 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
57 : Q4S0R8_TETNG 0.40 0.60 15 66 948 1000 53 1 1 1155 Q4S0R8 Chromosome undetermined SCAF14779, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00025898001 PE=4 SV=1
58 : C3XRC2_BRAFL 0.35 0.58 6 66 38 96 62 2 4 447 C3XRC2 Putative uncharacterized protein (Fragment) OS=Branchiostoma floridae GN=BRAFLDRAFT_210659 PE=4 SV=1
59 : W5LF69_ASTMX 0.35 0.68 8 66 97 155 60 2 2 335 W5LF69 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
60 : F1RDY7_DANRE 0.34 0.65 5 65 95 155 62 2 2 984 F1RDY7 Uncharacterized protein OS=Danio rerio GN=gabbr1a PE=4 SV=2
## ALIGNMENTS 1 - 60
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 92 A E 0 0 241 1 0
2 93 A A + 0 0 86 1 0
3 94 A E - 0 0 161 1 0
4 95 A F - 0 0 182 1 0
5 96 A V - 0 0 88 55 36 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV VVVVVV VVVVVV LLLLLM L
6 97 A R - 0 0 204 59 27 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHHHRRR R M
7 98 A I - 0 0 64 59 60 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIITATTTTTTL I M
8 99 A a - 0 0 8 60 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCC
9 100 A S - 0 0 45 60 36 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSSSPPS CPP
10 101 A K S > S+ 0 0 139 60 23 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRRRKKK NKR
11 102 A S G > S+ 0 0 77 60 67 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSMMMIMM SVS
12 103 A Y G 3 S+ 0 0 40 60 56 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHHHHHW SWW
13 104 A L G < S+ 0 0 78 60 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL VTM
14 105 A T < - 0 0 97 60 75 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTAATTTATAAITMTTNKKKSSN ESS
15 106 A L > - 0 0 33 61 4 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILL
16 107 A E T 3 S+ 0 0 145 61 2 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEEEEEEEEEE
17 108 A N T 3 S+ 0 0 102 61 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNNNNN
18 109 A G E < S-A 39 0A 14 61 4 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGG
19 110 A K E -A 38 0A 143 61 57 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKTTRRRRQQRVQRR
20 111 A V E -A 37 0A 25 61 55 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAAAAAAAATPVVV
21 112 A F E -A 36 0A 85 60 100 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFVDDDVHEH.VS
22 113 A L E +A 35 0A 74 60 40 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVLLLLLLLLLPVVVPVVL.VL
23 114 A T E +A 34 0A 88 60 86 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTKTRRRRRRRKRH.SQ
24 115 A G S S+ 0 0 61 61 34 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNPTPP
25 116 A G + 0 0 33 61 82 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGMMMMLFSAHP
26 117 A D - 0 0 126 61 48 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNNEGGGEEDNLGG
27 118 A L S S+ 0 0 108 60 99 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLRRRRRRRRRVE.P
28 119 A P S S+ 0 0 111 61 58 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPVVVVVVEDPP
29 120 A A + 0 0 58 61 56 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPPPPPPVYAV
30 121 A L - 0 0 58 61 53 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMVVVKCVE
31 122 A D S S- 0 0 160 61 39 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEEPSEG
32 123 A G S S- 0 0 31 61 7 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT
33 124 A A - 0 0 9 61 57 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTANTV
34 125 A R E -AB 23 52A 128 61 79 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRWRWWWSSSWLVQVVL
35 126 A V E -AB 22 51A 0 60 10 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVLVVVVVVVIL.
36 127 A E E -AB 21 50A 58 61 44 EEEEEEEEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDQQQEEEREHH
37 128 A F E +A 20 0A 7 61 2 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYYYFFYY
38 129 A R E -A 19 0A 137 61 69 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRAAAHRHSSTS
39 130 A b E -A 18 0A 24 61 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 131 A D > - 0 0 66 61 32 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNNDDNLH
41 132 A P T 3 S+ 0 0 137 61 30 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPHPASA
42 133 A D T 3 S+ 0 0 70 61 42 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGGGGGGGGGGGGG
43 134 A F E < -C 67 0B 52 61 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYFF
44 135 A H E -C 66 0B 87 61 70 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQLLLRHQYEIL
45 136 A L E +C 65 0B 40 61 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
46 137 A V + 0 0 81 61 34 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAVVVVVVVTVLVEE
47 138 A G S S+ 0 0 47 61 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
48 139 A S + 0 0 22 61 51 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGSVSSSSSSSTTEERF
49 140 A S + 0 0 48 61 48 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSAPSPFNN
50 141 A R E +B 36 0A 181 61 53 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRHHHRRRVSSI
51 142 A S E -B 35 0A 1 61 26 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSTSSSSSSSSSSSSSSSSSSSSSSVATS
52 143 A V E -B 34 0A 39 61 74 VVVVVVVVIIIIIIIIIIIIIIIIIIIIIIIIIIIVVIIIIIIIVITIIVLLLNNHHVQH
53 144 A a B +D 58 0C 4 61 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
54 145 A S - 0 0 60 61 74 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSCSSSSSSNSSAAGTTTTTTQQTT
55 146 A Q S S- 0 0 191 61 61 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRRkkkkkkndkk
56 147 A G S S+ 0 0 39 61 10 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGgggggggkgg
57 148 A Q S S- 0 0 132 61 58 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKKKRRKETKK
58 149 A W B -D 53 0C 24 61 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
59 150 A S S S+ 0 0 78 61 50 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNNSSSSSSSDDDDDDSSDSSDD
60 151 A T S S- 0 0 46 61 83 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTITTTTITTITTATTSSTSTTTHHHFSHHAYS
61 152 A P - 0 0 76 61 23 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPSPPPPPPPPADPRPP
62 153 A K - 0 0 75 61 22 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKLLKK
63 154 A P - 0 0 27 61 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
64 155 A H - 0 0 122 61 101 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQQHHHHHQHHHHSSSIIIIVISTIL
65 156 A b E -C 45 0B 31 60 0 CCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
66 157 A Q E -C 44 0B 112 59 26 QQQQQQQQ QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEEEEQR
67 158 A V E C 43 0B 74 35 10 VV VV VV VVV VVVVV V VVVVVVV VVVVVV V VVVV L
68 159 A N 0 0 166 32 68 N NN NN NNN NNN N N NNNNNNN NNNNNR N KKRR
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 92 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 0 0 0.000 0 1.00
2 93 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
3 94 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 1 0 0 0.000 0 1.00
4 95 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
5 96 A 87 11 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 55 0 0 0.433 14 0.63
6 97 A 0 0 0 2 0 0 0 0 0 0 0 0 0 5 93 0 0 0 0 0 59 0 0 0.286 9 0.72
7 98 A 0 2 83 2 0 0 0 0 2 0 0 12 0 0 0 0 0 0 0 0 59 0 0 0.614 20 0.39
8 99 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 60 0 0 0.000 0 1.00
9 100 A 0 0 0 0 0 0 0 0 0 8 90 0 2 0 0 0 0 0 0 0 60 0 0 0.370 12 0.64
10 101 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 92 0 0 2 0 60 0 0 0.329 10 0.76
11 102 A 2 0 2 8 0 0 0 0 0 0 88 0 0 0 0 0 0 0 0 0 60 0 0 0.453 15 0.33
12 103 A 0 0 0 0 0 5 83 0 0 0 2 0 0 10 0 0 0 0 0 0 60 0 0 0.600 20 0.43
13 104 A 2 95 0 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 60 0 0 0.253 8 0.83
14 105 A 0 0 2 2 0 0 0 0 12 0 7 68 0 0 0 5 0 2 3 0 60 0 0 1.159 38 0.25
15 106 A 0 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.084 2 0.95
16 107 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 3 61 0 0 0.144 4 0.97
17 108 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 61 0 0 0.084 2 0.98
18 109 A 0 0 0 0 0 0 0 98 2 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.084 2 0.95
19 110 A 2 0 0 0 0 0 0 0 0 0 0 3 0 0 11 79 5 0 0 0 61 0 0 0.765 25 0.43
20 111 A 84 0 0 0 0 0 0 0 13 2 0 2 0 0 0 0 0 0 0 0 61 1 0 0.551 18 0.44
21 112 A 5 0 0 0 83 0 0 0 0 0 2 0 0 3 0 0 0 2 0 5 60 0 0 0.701 23 -0.01
22 113 A 13 83 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 60 0 0 0.534 17 0.59
23 114 A 0 0 0 0 0 0 0 0 0 0 2 78 0 2 13 3 2 0 0 0 60 0 0 0.778 25 0.14
24 115 A 0 0 0 0 0 0 0 92 0 5 0 2 0 0 0 0 0 0 2 0 61 0 0 0.361 12 0.66
25 116 A 0 2 0 7 2 0 0 84 2 2 2 0 0 2 0 0 0 0 0 0 61 0 0 0.733 24 0.17
26 117 A 0 2 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 5 5 80 61 1 0 0.745 24 0.51
27 118 A 2 80 0 0 0 0 0 0 0 2 0 0 0 0 15 0 0 2 0 0 60 0 0 0.668 22 0.01
28 119 A 10 0 0 0 0 0 0 0 0 87 0 0 0 0 0 0 0 2 0 2 61 0 0 0.485 16 0.42
29 120 A 3 0 0 0 0 0 2 0 85 10 0 0 0 0 0 0 0 0 0 0 61 0 0 0.544 18 0.44
30 121 A 7 84 0 5 0 0 0 0 0 0 0 0 2 0 0 2 0 2 0 0 61 0 0 0.679 22 0.47
31 122 A 0 0 0 0 0 0 0 2 0 2 2 0 0 0 0 0 0 13 0 82 61 0 0 0.632 21 0.60
32 123 A 0 0 0 0 0 0 0 98 0 0 0 2 0 0 0 0 0 0 0 0 61 0 0 0.084 2 0.93
33 124 A 2 0 0 0 0 0 0 0 84 0 0 13 0 0 0 0 0 0 2 0 61 0 0 0.551 18 0.43
34 125 A 5 3 0 0 0 8 0 0 0 0 5 0 0 0 77 0 2 0 0 0 61 1 0 0.882 29 0.21
35 126 A 95 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60 0 0 0.230 7 0.89
36 127 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 5 21 0 69 61 0 0 0.914 30 0.56
37 128 A 0 0 0 0 92 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.284 9 0.97
38 129 A 0 0 0 0 0 0 0 0 5 0 5 2 0 3 85 0 0 0 0 0 61 0 0 0.612 20 0.30
39 130 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
40 131 A 0 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 5 92 61 0 0 0.361 12 0.68
41 132 A 0 0 0 0 0 0 0 0 5 92 2 0 0 2 0 0 0 0 0 0 61 0 0 0.361 12 0.70
42 133 A 0 0 0 0 0 0 0 21 0 0 0 0 0 0 0 0 0 0 0 79 61 0 0 0.518 17 0.57
43 134 A 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.084 2 0.99
44 135 A 0 7 2 0 0 0 2 0 0 0 0 0 0 84 2 0 3 2 0 0 61 0 0 0.710 23 0.29
45 136 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
46 137 A 92 2 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 3 0 0 61 0 0 0.393 13 0.66
47 138 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
48 139 A 2 0 0 0 2 0 0 2 0 0 87 3 0 0 2 0 0 3 0 0 61 0 0 0.616 20 0.49
49 140 A 0 0 0 0 2 0 0 0 2 3 89 2 0 0 0 0 0 0 3 0 61 0 0 0.534 17 0.51
50 141 A 2 0 2 0 0 0 0 0 0 0 3 0 0 5 89 0 0 0 0 0 61 0 0 0.503 16 0.46
51 142 A 2 0 0 0 0 0 0 0 2 0 92 5 0 0 0 0 0 0 0 0 61 0 0 0.361 12 0.74
52 143 A 23 5 61 0 0 0 0 0 0 0 0 2 0 5 0 0 2 0 3 0 61 0 0 1.184 39 0.25
53 144 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
54 145 A 0 0 0 0 0 0 0 2 3 0 75 13 2 0 0 0 3 0 2 0 61 0 0 0.906 30 0.26
55 146 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 13 79 0 2 2 61 0 10 0.738 24 0.38
56 147 A 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 2 0 0 0 0 61 0 0 0.084 2 0.89
57 148 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 3 10 84 2 0 0 61 0 0 0.625 20 0.41
58 149 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
59 150 A 0 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 3 15 61 0 0 0.557 18 0.49
60 151 A 0 0 5 0 2 0 2 0 3 0 8 72 0 8 0 0 0 0 0 0 61 0 0 1.041 34 0.17
61 152 A 0 0 0 0 0 0 0 0 3 92 2 0 0 0 2 0 0 0 0 2 61 0 0 0.393 13 0.76
62 153 A 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 61 0 0 0.144 4 0.78
63 154 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 61 0 0 0.000 0 1.00
64 155 A 2 2 10 0 0 0 0 0 0 0 7 2 0 74 0 0 5 0 0 0 61 0 0 0.982 32 -0.02
65 156 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 60 0 0 0.000 0 1.00
66 157 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 92 7 0 0 59 0 0 0.333 11 0.74
67 158 A 97 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 0.130 4 0.90
68 159 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 6 0 0 84 0 32 0 0 0.539 17 0.32
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
51 52 145 1 kSg
52 52 145 1 kSg
53 52 146 1 kSg
54 52 185 1 kVg
55 52 152 1 kVg
56 52 122 1 kLg
57 42 989 1 nKg
58 48 85 1 dDk
59 48 144 1 kLg
60 51 145 1 kLg
//