Complet list of 1sis hssp file
Complete list of 1sis.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1SIS
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER TOXIN 11-NOV-93 1SIS
COMPND MOL_ID: 1; MOLECULE: SCORPION INSECTOTOXIN I5A; CHAIN: A; ENGINEERED:
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MESOBUTHUS EUPEUS; ORGANISM_COMMON: LE
AUTHOR A.S.ARSENIEV,V.I.KONDAKOV,A.L.LOMIZE,V.N.MAIOROV,V.F.BYSTROV
DBREF 1SIS A 1 35 UNP P15222 SCX5_BUTEU 1 35
SEQLENGTH 35
NCHAIN 1 chain(s) in 1SIS data set
NALIGN 28
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : SCX5_MESEU 1SIS 1.00 1.00 1 35 1 35 35 0 0 35 P15222 Insectotoxin-I5A OS=Mesobuthus eupeus PE=1 SV=2
2 : SCX4_MESEU 0.97 0.97 1 35 1 35 35 0 0 35 P60269 Insectotoxin-I4 OS=Mesobuthus eupeus PE=1 SV=1
3 : R4H616_MESEU 0.94 0.94 1 35 4 38 35 0 0 39 R4H616 Chloride channel toxin-like peptide (Fragment) OS=Mesobuthus eupeus PE=2 SV=1
4 : SCXC_MESEU 0.94 0.94 1 35 1 35 35 0 0 35 P86401 Neurotoxin MeuClTx OS=Mesobuthus eupeus PE=1 SV=1
5 : F1DI80_MESEU 0.91 0.91 1 33 1 33 33 0 0 34 F1DI80 Chlorotoxin-like peptide OS=Mesobuthus eupeus PE=4 SV=1
6 : SCXS_MESEU 0.91 0.94 1 35 1 35 35 0 0 35 P60270 Insectotoxin-I5 OS=Mesobuthus eupeus PE=1 SV=1
7 : SCCX_MESMA 0.88 0.97 2 35 25 58 34 0 0 59 Q9BJW4 Neurotoxin Bm12-b OS=Mesobuthus martensii PE=2 SV=1
8 : E4VP45_MESEU 0.86 0.94 1 35 25 59 35 0 0 60 E4VP45 Venom chloride channel toxin-1 OS=Mesobuthus eupeus PE=4 SV=1
9 : E4VP46_MESEU 0.86 0.94 1 35 25 59 35 0 0 67 E4VP46 Venom chloride channel toxin-2 OS=Mesobuthus eupeus PE=4 SV=1
10 : R4H559_MESEU 0.86 0.94 1 35 4 38 35 0 0 39 R4H559 Chloride channel toxin-like peptide 1b (Fragment) OS=Mesobuthus eupeus PE=2 SV=1
11 : R4H5A4_MESEU 0.86 0.94 1 35 25 59 35 0 0 60 R4H5A4 Chloride channel toxin-like peptide 1a OS=Mesobuthus eupeus PE=4 SV=1
12 : SCXC1_MESEU 0.86 0.94 1 35 1 35 35 0 0 35 P86402 Neurotoxin MeuClTx-1 OS=Mesobuthus eupeus PE=1 SV=1
13 : SCCT_MESMA 0.85 0.94 2 35 25 58 34 0 0 59 Q9UAD0 Neurotoxin BmKCT OS=Mesobuthus martensii PE=2 SV=1
14 : SCX1_MESEU 0.79 0.88 1 33 1 33 33 0 0 36 P15220 Insectotoxin-I1 OS=Mesobuthus eupeus PE=1 SV=1
15 : SCXL_LEIQU 1CHL 0.77 0.89 1 33 1 35 35 1 2 36 P45639 Chlorotoxin OS=Leiurus quinquestriatus quinquestriatus PE=1 SV=1
16 : SCX1_HOTTS 0.76 0.88 2 33 2 35 34 1 2 35 P15229 Small toxin OS=Hottentotta tamulus sindicus PE=1 SV=1
17 : SCX1_LEIQH 0.74 0.85 2 35 1 34 34 0 0 34 P85066 Toxin GaTx1 OS=Leiurus quinquestriatus hebraeus PE=1 SV=1
18 : SCX3_MESEU 0.74 0.82 1 33 1 33 34 2 2 36 P60268 Insectotoxin-I3 OS=Mesobuthus eupeus PE=1 SV=1
19 : SCXL_HOTTS 0.74 0.79 2 35 1 34 34 0 0 36 P59887 Chlorotoxin-like peptide Bs 14 OS=Hottentotta tamulus sindicus PE=1 SV=1
20 : SCXP_ANDMA 0.74 0.74 2 35 1 34 34 0 0 35 P01498 Neurotoxin P2 OS=Androctonus mauretanicus mauretanicus PE=1 SV=1
21 : SCX8_LEIQH 0.71 0.85 2 33 2 35 34 1 2 38 P55966 Probable toxin Lqh 8/6 OS=Leiurus quinquestriatus hebraeus PE=1 SV=1
22 : CTXL_ANDAU 0.65 0.76 1 33 1 34 34 1 1 34 P86436 Chlorotoxin-like peptide OS=Androctonus australis PE=1 SV=1
23 : SCX3_MESTA 0.62 0.72 2 33 26 57 32 0 0 60 P83400 Neurotoxin BtITx3 OS=Mesobuthus tamulus PE=1 SV=2
24 : SCIT_MESTA 0.61 0.73 2 33 26 58 33 1 1 62 P81761 Lepidopteran-selective toxin OS=Mesobuthus tamulus PE=1 SV=2
25 : B8XH23_BUTOS 0.55 0.64 2 34 20 52 33 0 0 57 B8XH23 Putative chloride channel toxin Tx16 OS=Buthus occitanus israelis PE=4 SV=1
26 : F1CIY7_HOTJU 0.50 0.59 2 34 26 59 34 1 1 61 F1CIY7 U14-hottentoxin-Hj1a OS=Hottentotta judaicus PE=4 SV=1
27 : B8XH25_BUTOS 0.47 0.62 2 33 33 66 34 1 2 70 B8XH25 Putative chloride channel toxin Tx357 (Fragment) OS=Buthus occitanus israelis PE=2 SV=1
28 : B8XH27_BUTOS 0.47 0.62 2 33 28 61 34 1 2 65 B8XH27 Putative chloride channel toxin Tx12 OS=Buthus occitanus israelis PE=4 SV=1
## ALIGNMENTS 1 - 28
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 157 16 0 MMMMMM MMMMM MM M M
2 2 A a - 0 0 40 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A M E S-A 31 0A 62 29 84 MMMMMMGMMMMMGMMKGMGGSIPGAPTT
4 4 A P E -A 30 0A 53 29 27 PPPPPPPPPPPPPPPPPPPPPPPPPNTT
5 5 A b - 0 0 3 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A F > - 0 0 113 29 2 FFFFFFFFFFFFFFFFFFFFFFFFLFFF
7 7 A T T 3 S+ 0 0 133 29 25 TTTTTTTTTTTTTTTTTTTTTTTTPTSS
8 8 A T T 3 S+ 0 0 124 29 14 TTTTTTTTTTTTTTTTTTKTTTTTGTTT
9 9 A D X> - 0 0 67 29 58 DDDDDDDRRRRRDRDDDDDDDNNDDNTT
10 10 A P T 34 S+ 0 0 124 29 53 PHHHHPAPPPPPAPHPHHPPQPPPFPPP
11 11 A N T 3> S+ 0 0 67 29 56 NNNNNNNDDDDDNDQQQQEYQNNQLNNN
12 12 A M H <> S+ 0 0 9 29 43 MMMMMMMMMMMMMMMMMTTTMMMTRAMM
13 13 A A H X S+ 0 0 46 29 56 AAAAAAAAAAAAAAASEAEETAEQDEDD
14 14 A K H > S+ 0 0 141 29 64 KKKKKNRQQQQQRQRKQRKSKAAAKAKK
15 15 A K H X S+ 0 0 56 29 58 KKKKKKKQQQQQKQKKKRKKKKDKKDII
16 16 A c H X S+ 0 0 0 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
17 17 A R H ><>S+ 0 0 82 29 75 RRRRNRRRRRRRRRDAARAAYNRSKKSS
18 18 A D H ><5S+ 0 0 122 29 56 DDDDDDEDDDDDEADDEDTTDAKEAKNN
19 19 A a H 3<5S+ 0 0 42 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A d T X<5S- 0 0 11 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
21 21 A G T < 5S- 0 0 65 29 32 GGGGGGGGGGGGGKGGGGGGGGGGGGRR
22 22 A G T 3 -B 30 0A 117 29 81 FFFFFFFFFFFFFFYYYFFVYRAKMAKK
28 28 A G T 3 S- 0 0 42 29 5 GGGGGGGGGGGGGGGGGGGGGGSGGGGG
29 29 A P T 3 S+ 0 0 110 29 87 PPYYPPPYYYYYPPPPPQPPPPYPIYSS
30 30 A Q E < -AB 4 27A 83 28 43 QQQQQQQQQQQQQQQQQ.QQQQQQSQYY
31 31 A c E -AB 3 26A 0 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
32 32 A L E - B 0 25A 55 29 37 LLLLLLLLLLLLLLLLLLLLIIIIRVVV
33 33 A d E - B 0 24A 25 29 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
34 34 A N 0 0 85 18 37 NNNN NNNNNNNN N NN SP
35 35 A R 0 0 231 16 0 RRRR RRRRRRRR R RR
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
3 3 A 0 0 3 52 0 0 0 21 3 7 3 7 0 0 0 3 0 0 0 0 29 0 0 1.500 50 0.16
4 4 A 0 0 0 0 0 0 0 0 0 90 0 7 0 0 0 0 0 0 3 0 29 0 0 0.398 13 0.72
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
6 6 A 0 3 0 0 97 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 0 0 0.150 5 0.98
7 7 A 0 0 0 0 0 0 0 0 0 3 7 90 0 0 0 0 0 0 0 0 29 0 0 0.398 13 0.74
8 8 A 0 0 0 0 0 0 0 3 0 0 0 93 0 0 0 3 0 0 0 0 29 0 0 0.299 9 0.85
9 9 A 0 0 0 0 0 0 0 0 0 0 0 7 0 0 21 0 0 0 10 62 29 0 0 1.041 34 0.42
10 10 A 0 0 0 0 3 0 0 0 7 62 0 0 0 24 0 0 3 0 0 0 29 0 0 1.056 35 0.47
11 11 A 0 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0 21 3 48 21 29 0 0 1.352 45 0.43
12 12 A 0 0 0 79 0 0 0 0 3 0 0 14 0 0 3 0 0 0 0 0 29 0 0 0.689 23 0.56
13 13 A 0 0 0 0 0 0 0 0 62 0 3 3 0 0 0 0 3 17 0 10 29 0 0 1.182 39 0.44
14 14 A 0 0 0 0 0 0 0 0 14 0 3 0 0 0 14 41 24 0 3 0 29 0 0 1.487 49 0.35
15 15 A 0 0 7 0 0 0 0 0 0 0 0 0 0 0 3 62 21 0 0 7 29 0 0 1.107 36 0.41
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 3 0 14 0 10 0 0 0 55 7 0 0 7 3 29 0 0 1.437 47 0.25
18 18 A 0 0 0 0 0 0 0 0 10 0 0 7 0 0 0 7 0 14 7 55 29 0 0 1.389 46 0.44
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 90 0 0 0 0 0 0 7 3 0 0 0 0 29 0 0 0.398 13 0.68
22 22 A 0 0 0 0 0 0 0 83 0 0 3 0 0 0 3 0 0 0 10 0 29 0 0 0.624 20 0.64
23 23 A 0 0 10 0 0 0 3 3 0 0 0 0 0 0 21 21 0 0 41 0 29 0 0 1.484 49 0.27
24 24 A 0 0 0 0 0 3 0 90 0 0 0 0 0 0 3 3 0 0 0 0 29 0 9 0.446 14 0.68
25 25 A 3 0 0 0 0 0 3 0 0 0 3 7 0 0 3 79 0 0 0 0 29 0 0 0.833 27 0.51
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
27 27 A 3 0 0 3 59 0 14 0 7 0 0 0 0 0 3 10 0 0 0 0 29 0 0 1.354 45 0.19
28 28 A 0 0 0 0 0 0 0 97 0 0 3 0 0 0 0 0 0 0 0 0 29 0 0 0.150 5 0.95
29 29 A 0 0 3 0 0 0 31 0 0 55 7 0 0 0 0 0 3 0 0 0 29 1 0 1.108 36 0.12
30 30 A 0 0 0 0 0 0 7 0 0 0 4 0 0 0 0 0 89 0 0 0 28 0 0 0.409 13 0.57
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
32 32 A 10 72 14 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 29 0 0 0.858 28 0.62
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 29 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 6 6 0 0 0 0 0 0 0 89 0 18 0 0 0.426 14 0.62
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 16 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
15 25 25 2 gRGk
16 24 25 2 gKGk
18 25 25 1 gRk
21 24 25 2 gKGk
22 25 25 1 rGs
24 24 49 1 gGv
26 24 49 1 wGk
27 24 56 2 gGGt
28 24 51 2 gGGt
//