Complet list of 1s6x hssp file
Complete list of 1s6x.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1S6X
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER TOXIN 28-JAN-04 1S6X
COMPND MOL_ID: 1; MOLECULE: KVAP CHANNEL; CHAIN: A; SYNONYM: VSTX, GATING MOD
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THIS PEPTIDE WAS SYNTHESIZED
AUTHOR H.J.JUNG,Y.J.EU,J.I.KIM
DBREF 1S6X A 1 34 PDB 1S6X 1S6X 1 34
SEQLENGTH 34
NCHAIN 1 chain(s) in 1S6X data set
NALIGN 49
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : M5AY63_GRARO 1.00 1.00 1 34 30 63 34 0 0 63 M5AY63 VSTx1 OS=Grammostola rosea PE=3 SV=1
2 : VSTX1_GRARO 1S6X 1.00 1.00 1 34 1 34 34 0 0 34 P60980 Kappa-theraphotoxin-Gr3a OS=Grammostola rosea PE=1 SV=1
3 : TXP5_BRASM 0.64 0.73 2 34 2 34 33 0 0 34 P49266 U2-theraphotoxin-Bs1a OS=Brachypelma smithi PE=1 SV=1
4 : JZ13A_CHIGU 0.56 0.68 1 33 30 63 34 1 1 66 B1P1C9 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
5 : JZ13B_CHIGU 0.56 0.68 1 33 30 63 34 1 1 66 B1P1D0 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
6 : JZ13C_CHIGU 0.56 0.68 1 33 30 63 34 1 1 66 B1P1C8 U10-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
7 : B5U1J9_HAPSC 0.55 0.79 1 33 53 84 33 1 1 87 B5U1J9 HWTX-III OS=Haplopelma schmidti PE=3 SV=1
8 : H8A01_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y240 Hainantoxin-VIII OS=Haplopelma hainanum PE=1 SV=1
9 : H8A02_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y241 Hainantoxin-VIII.2 OS=Haplopelma hainanum PE=1 SV=1
10 : H8A03_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y242 Hainantoxin-VIII.3 OS=Haplopelma hainanum PE=1 SV=1
11 : H8A04_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y243 Hainantoxin-VIII.4 OS=Haplopelma hainanum PE=1 SV=1
12 : H8A05_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y248 Hainantoxin-VIII.5 OS=Haplopelma hainanum PE=1 SV=1
13 : H8A06_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y249 Hainantoxin-VIII.6 OS=Haplopelma hainanum PE=1 SV=1
14 : H8A07_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y250 Hainantoxin-VIII.7 OS=Haplopelma hainanum PE=1 SV=1
15 : H8A08_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2G3 Hainantoxin-VIII.8 OS=Haplopelma hainanum PE=1 SV=1
16 : H8A09_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2G4 Hainantoxin-VIII.9 OS=Haplopelma hainanum PE=1 SV=1
17 : H8A10_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2G5 Hainantoxin-VIII.10 OS=Haplopelma hainanum PE=1 SV=1
18 : H8A11_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2G6 Hainantoxin-VIII.11 OS=Haplopelma hainanum PE=1 SV=1
19 : H8A12_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M1 Hainantoxin-VIII.12 OS=Haplopelma hainanum PE=1 SV=1
20 : H8A13_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M4 Hainantoxin-VIII.13 OS=Haplopelma hainanum PE=1 SV=1
21 : H8A14_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M5 Hainantoxin-VIII.14 OS=Haplopelma hainanum PE=1 SV=1
22 : H8A15_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M6 Hainantoxin-VIII.15 OS=Haplopelma hainanum PE=1 SV=1
23 : H8A16_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M8 Hainantoxin-VIII.16 OS=Haplopelma hainanum PE=1 SV=1
24 : H8A17_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2N0 Hainantoxin-VIII.17 OS=Haplopelma hainanum PE=1 SV=1
25 : H8A18_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2N1 Hainantoxin-VIII.18 OS=Haplopelma hainanum PE=1 SV=1
26 : H8A19_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2N4 Hainantoxin-VIII.19 OS=Haplopelma hainanum PE=1 SV=1
27 : H8D01_HAPHA 0.55 0.76 1 33 53 84 33 1 1 87 D2Y246 Hainantoxin-VIII-4 OS=Haplopelma hainanum PE=2 SV=1
28 : H8E01_HAPHA 0.55 0.82 1 33 53 84 33 1 1 87 D2Y247 Hainantoxin-VIII-5 OS=Haplopelma hainanum PE=2 SV=1
29 : H8F01_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2G7 Hainantoxin-VIII-6 OS=Haplopelma hainanum PE=2 SV=1
30 : H8K01_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2M3 Hainantoxin-VIII-11 OS=Haplopelma hainanum PE=3 SV=1
31 : H8M01_HAPHA 0.55 0.79 1 33 53 84 33 1 1 87 D2Y2N2 Hainantoxin-VIII-13 OS=Haplopelma hainanum PE=3 SV=1
32 : H8N01_HAPHA 0.55 0.76 1 33 53 84 33 1 1 87 D2Y2N3 Hainantoxin-VIII-14 OS=Haplopelma hainanum PE=3 SV=1
33 : H8P01_HAPHA 0.55 0.76 1 33 53 84 33 1 1 87 D2Y2N6 Hainantoxin-VIII-16 OS=Haplopelma hainanum PE=3 SV=1
34 : HN423_HAPHA 0.55 0.82 1 33 1 32 33 1 1 32 P0CH72 Hainantoxin F4-23.43 OS=Haplopelma hainanum PE=1 SV=1
35 : TXH3_HAPSC 0.55 0.79 1 33 53 84 33 1 1 87 P61103 U2-theraphotoxin-Hh1a OS=Haplopelma schmidti PE=1 SV=2
36 : B1P1D1_CHIGU 0.53 0.74 1 34 30 63 34 0 0 65 B1P1D1 Cystine knot toxin OS=Chilobrachys guangxiensis GN=JZTX-16 PE=3 SV=1
37 : JZ16B_CHIGU 0.53 0.74 1 34 30 63 34 0 0 65 B1P1D2 U11-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=2 SV=1
38 : H8B01_HAPHA 0.52 0.76 1 33 53 84 33 1 1 87 D2Y244 Hainantoxin-VIII-2 OS=Haplopelma hainanum PE=2 SV=1
39 : H8C01_HAPHA 0.52 0.76 1 33 43 74 33 1 1 77 D2Y245 Hainantoxin-VIII-3 (Fragment) OS=Haplopelma hainanum PE=2 SV=2
40 : H8G01_HAPHA 0.52 0.76 1 33 53 84 33 1 1 87 D2Y2G8 Hainantoxin-VIII-7 OS=Haplopelma hainanum PE=2 SV=1
41 : H8H01_HAPHA 0.52 0.79 1 33 53 84 33 1 1 87 D2Y2G9 Hainantoxin-VIII-8 OS=Haplopelma hainanum PE=2 SV=1
42 : H8I01_HAPHA 0.52 0.76 1 33 53 84 33 1 1 87 D2Y2M0 Hainantoxin-VIII-9 OS=Haplopelma hainanum PE=3 SV=1
43 : H8J01_HAPHA 0.52 0.76 1 33 53 84 33 1 1 87 D2Y2M2 Hainantoxin-VIII-10 OS=Haplopelma hainanum PE=3 SV=1
44 : H8L01_HAPHA 0.52 0.79 1 33 53 84 33 1 1 87 D2Y2M9 Hainantoxin-VIII-12 OS=Haplopelma hainanum PE=3 SV=1
45 : H8O01_HAPHA 0.52 0.79 1 33 53 84 33 1 1 87 D2Y2N5 Hainantoxin-VIII-15 OS=Haplopelma hainanum PE=3 SV=1
46 : H8Q01_HAPHA 0.52 0.76 1 33 53 84 33 1 1 87 D2Y2N7 Hainantoxin-VIII-17 OS=Haplopelma hainanum PE=3 SV=1
47 : JZT18_CHIGU 0.50 0.71 1 34 30 63 34 0 0 65 B1P1D3 U11-theraphotoxin-Cj1b OS=Chilobrachys guangxiensis PE=2 SV=1
48 : JZTX3_CHIGU 2I1T 0.47 0.59 1 33 30 63 34 1 1 63 P62520 Beta-theraphotoxin-Cj1a OS=Chilobrachys guangxiensis PE=1 SV=1
49 : M5AXK5_GRARO 0.47 0.65 1 34 51 84 34 0 0 86 M5AXK5 GTx1-3 OS=Grammostola rosea PE=3 SV=1
## ALIGNMENTS 1 - 49
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 189 49 30 EE QQQDDDDDDDDDDDDDDDDDDDDDDNDDDDDDDDDDDDDDDDDDEE
2 2 A a - 0 0 61 50 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A G B -a 15 0A 0 50 67 GGVGGGAAAAAAAAAAAAAAAAAAAAAAAAAAVAAKKAAAAAAAAAKGK
4 4 A K > - 0 0 151 50 60 KKDEEEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGY
5 5 A F T 3 S+ 0 0 80 50 7 FFFFFFYYYYYYYYYYYYYYYYYYYYYYYYYHYYYFFYYYYYYYYYFFY
6 6 A M T 3 S+ 0 0 105 50 56 MMQMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMQQMMMMMMMMMQWW
7 7 A W < - 0 0 118 50 55 WWTWWWRRRRRRRRRRRRRRRRRRRRRRRRRRRRRVVRRRRRRRRRVWG
8 8 A K - 0 0 176 50 65 KKKKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKKEEEEEEEEEKKK
9 9 A b - 0 0 29 50 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A K S S- 0 0 154 50 47 KKKGGGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNEKKKKKGE
11 11 A N S S- 0 0 123 50 73 NNKAAAEEEEEEEEEEEEEEEEEEEEGEEEEEEEEKKEEEEEEEEEKRK
12 12 A S S > S+ 0 0 52 49 80 SSDgggKKKKKKKKKKKKKKKKKKKKKKKKEKK.KDDKKKKKKKKKDgN
13 13 A N T 3 S+ 0 0 111 13 71 NNSppp...........................K.SS.........SpS
14 14 A D T 3 S+ 0 0 50 50 107 DDDTTTLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLEPD
15 15 A c B < S-a 3 0A 9 50 3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCC
16 16 A a > - 0 0 28 50 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
17 17 A K T 3 S+ 0 0 170 50 43 KKGSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSKK
18 18 A D T 3 S+ 0 0 91 50 47 DDKGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGSSGGGGGGGGGSGH
19 19 A L E < +B 30 0B 14 50 33 LLLYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYL
20 20 A V E -B 29 0B 42 50 57 VVEDDDVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVAQ
21 21 A b E -B 28 0B 34 50 3 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCCC
22 22 A S E >> -B 27 0B 31 50 25 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSGGSSSSSSPSSGSE
23 23 A S T 45S+ 0 0 128 50 34 SSSPPPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSRKS
24 24 A R T 45S+ 0 0 196 50 68 RRRTTTRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQQRRRRRRRRGQTY
25 25 A W T 45S- 0 0 116 50 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
26 26 A K T <5S+ 0 0 134 50 10 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGK
27 27 A W E