Complet list of 1ryv hssp file
Complete list of 1ryv.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1RYV
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-09
HEADER TOXIN 22-DEC-03 1RYV
COMPND MOL_ID: 1; MOLECULE: HAINANTOXIN-IV; CHAIN: A; SYNONYM: HNTX-IV; ENGIN
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: SYNTHESIZED USING STANDARD F
AUTHOR D.LI,S.LU,X.GU,S.LIANG
DBREF 1RYV A 1 35 UNP P83471 TXHA4_SELHA 1 35
SEQLENGTH 35
NCHAIN 1 chain(s) in 1RYV data set
NALIGN 48
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : H4A01_HAPHA 1NIY 0.97 0.97 1 35 50 84 35 0 0 86 D2Y232 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
2 : H4A02_HAPHA 0.97 0.97 1 35 50 84 35 0 0 86 D2Y233 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
3 : H4A03_HAPHA 0.97 0.97 1 35 50 84 35 0 0 86 D2Y2D7 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
4 : H4B01_HAPHA 0.94 0.97 1 35 50 84 35 0 0 86 D2Y234 Hainantoxin-IV-2 OS=Haplopelma hainanum PE=2 SV=1
5 : H4C01_HAPHA 0.94 0.97 1 35 50 84 35 0 0 86 D2Y235 Hainantoxin-IV-3 OS=Haplopelma hainanum PE=2 SV=1
6 : TXHA5_HAPHA 0.94 0.97 1 35 1 35 35 0 0 35 P60975 Mu-theraphotoxin-Hhn1a OS=Haplopelma hainanum PE=1 SV=1
7 : HTX1_HAPLI 0.78 0.91 2 33 2 33 32 0 0 35 B3EWN2 Beta-theraphotoxin-Hl1a OS=Haplopelma lividum PE=1 SV=1
8 : TXH4_HAPSC 1MB6 0.77 0.89 1 35 53 87 35 0 0 89 P83303 Mu-theraphotoxin-Hh2a OS=Haplopelma schmidti PE=1 SV=2
9 : TX3_PARSR 0.66 0.83 1 35 1 34 35 1 1 34 P84510 Beta-theraphotoxin-Ps1a OS=Paraphysa scrofa PE=1 SV=1
10 : M5AYC6_GRARO 0.64 0.82 1 33 47 78 33 1 1 82 M5AYC6 GTx1-15-1 OS=Grammostola rosea PE=3 SV=1
11 : TX15_GRARO 0.64 0.82 1 33 47 78 33 1 1 82 P0DJA9 Toxin Gtx1-15 OS=Grammostola rosea PE=1 SV=1
12 : TX2_CERMR 0.58 0.73 1 33 1 31 33 1 2 33 P84508 Beta-theraphotoxin-Cm1b OS=Ceratogyrus marshalli PE=1 SV=1
13 : M5AWU2_GRARO 0.55 0.79 1 33 46 77 33 1 1 81 M5AWU2 GTx1-15-2 OS=Grammostola rosea PE=3 SV=1
14 : TX1_CERMR 0.54 0.74 1 35 1 33 35 1 2 33 P84507 Beta-theraphotoxin-Cm1a OS=Ceratogyrus marshalli PE=1 SV=1
15 : M5AWT6_GRARO 0.51 0.71 1 35 47 79 35 1 2 81 M5AWT6 GTx1-12 OS=Grammostola rosea PE=3 SV=1
16 : HTX2_HAPLI 0.50 0.68 2 35 2 33 34 1 2 33 B3EWN3 Beta/kappa-theraphotoxin-Hl2a OS=Haplopelma lividum PE=1 SV=1
17 : TX1_THEBL 0.50 0.74 2 35 3 34 34 1 2 35 P83745 Kappa-theraphotoxin-Tb1a OS=Theraphosa blondi PE=1 SV=1
18 : M5AYC3_GRARO 0.49 0.69 1 35 47 79 35 1 2 81 M5AYC3 GTx1-11 OS=Grammostola rosea PE=3 SV=1
19 : VSTX3_GRARO 0.49 0.69 1 35 1 33 35 1 2 34 P0C2P5 Kappa-theraphotoxin-Gr4a OS=Grammostola rosea PE=1 SV=1
20 : H1A01_HAPHA 1NIX 0.47 0.72 1 32 49 78 32 1 2 83 D2Y1X6 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
21 : H1A02_HAPHA 0.47 0.72 1 32 49 78 32 1 2 83 D2Y1X7 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
22 : H1A03_HAPHA 0.47 0.72 1 32 49 78 32 1 2 83 D2Y1X8 Mu-theraphotoxin-Hhn2b OS=Haplopelma hainanum PE=1 SV=1
23 : H3A01_HAPHA 2JTB 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1X9 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
24 : H3A02_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y0 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
25 : H3A03_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y1 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
26 : H3A04_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y2 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
27 : H3A05_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y3 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
28 : H3A06_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z4 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
29 : H3A07_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z7 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
30 : H3A08_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z8 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
31 : H3A09_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y2D1 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
32 : H3A10_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y2D2 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
33 : H3A11_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y2D3 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
34 : H3A12_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y2I3 Mu-theraphotoxin-Hhn2a OS=Haplopelma hainanum PE=1 SV=1
35 : H3B01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y4 Hainantoxin-III-2 OS=Haplopelma hainanum PE=2 SV=1
36 : H3B02_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Y5 Hainantoxin-III-2.2 OS=Haplopelma hainanum PE=2 SV=1
37 : H3B03_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z3 Hainantoxin-III-2.3 OS=Haplopelma hainanum PE=2 SV=1
38 : H3B04_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z5 Hainantoxin-III-2.4 OS=Haplopelma hainanum PE=2 SV=1
39 : H3B05_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z6 Hainantoxin-III-2.5 OS=Haplopelma hainanum PE=2 SV=1
40 : H3G01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z0 Hainantoxin-III-7 OS=Haplopelma hainanum PE=2 SV=1
41 : H3I01_HAPHA 0.47 0.66 1 32 49 78 32 1 2 80 D2Y1Z2 Hainantoxin-III-9 OS=Haplopelma hainanum PE=2 SV=1
42 : H3J01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y1Z9 Hainantoxin-III-10 OS=Haplopelma hainanum PE=2 SV=1
43 : H3K01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y200 Hainantoxin-III-11 OS=Haplopelma hainanum PE=2 SV=1
44 : H3L01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y201 Hainantoxin-III-12 OS=Haplopelma hainanum PE=2 SV=1
45 : H3M01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y202 Hainantoxin-III-13 OS=Haplopelma hainanum PE=2 SV=1
46 : H3O01_HAPHA 0.47 0.69 1 32 49 78 32 1 2 83 D2Y2I5 Hainantoxin-III-15 OS=Haplopelma hainanum PE=3 SV=1
47 : TX2_THEBL 0.46 0.69 1 35 2 34 35 1 2 35 P83746 Kappa-theraphotoxin-Tb1b OS=Theraphosa blondi PE=1 SV=1
48 : TX3_THEBL 0.46 0.71 1 35 2 34 35 1 2 35 P83747 Kappa-theraphotoxin-Tb1c OS=Theraphosa blondi PE=1 SV=1
## ALIGNMENTS 1 - 48
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 205 46 48 EEEEEE EDDDDDDD DDEEEGGGGGGGGGGGGGGGGGGGGGGGGDD
2 2 A a - 0 0 46 49 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A L B -a 16 0A 24 49 87 LLLLLLLLLLLLLLLKLLLKKKKKKKKKKKKKKKKKKKKKKKKKRKLL
4 4 A G > - 0 0 37 49 4 GGGGGGGEGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
5 5 A F T 3 S+ 0 0 104 49 19 FFFFFFFIFFFWFWWLMWWFFFFFFFFFFFFFFFFFFFFFFFFFFFMM
6 6 A G T 3 S+ 0 0 42 49 81 GGGGGGGFLMMFMFFFFFFGGGGGGGGGGGGGGGGGGGGGGGGGGGFF
7 7 A K < - 0 0 121 49 72 KKKKKKEKWRRKRKKVEKKKKKDDDDDDDDDDDDDDDDDDDDDDDDSS
8 8 A G B +B 30 0B 54 49 51 GGGGGGKAKKKSKSGTSGGSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
9 9 A b - 0 0 13 49 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10 10 A N - 0 0 98 49 80 NNNNNNNNNIIDIDDTDDDVVVTTTTTTTTTTTTTTTTTTTATTTTDD
11 11 A P S > S+ 0 0 35 49 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
12 12 A S T 3 S+ 0 0 112 48 61 SSSSSSSSSDDK.KDGNDDGGGGGGGGGGGGGGGGGGGGGEGGGGGKN
13 13 A N T 3 S- 0 0 101 49 56 NNNNSNNNNNNNDNNKNNNKKKKKKKKKKKKKKKKKKKKKKKKKKKNN
14 14 A D < + 0 0 82 49 38 DDDDDDDDDDDDNDDDDDDNNNNNNNNNNNNNNNNNNNNNNNNNNNDD
15 15 A Q + 0 0 100 49 58 QQQQQQKQKKKKDKKEKKKEEEEEEEEEEEEEEEEEEEEEEEEEEEKK
16 16 A c B S-a 3 0A 12 49 7 CCCCCCCCCCCCKCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
17 17 A a > - 0 0 36 49 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A K T > 5S+ 0 0 183 10 71 KKKKKKKK....C...................................
19 19 A S T 3 5S+ 0 0 122 13 68 SSSSSSSSRRR.R...................................
20 20 A S T 3 5S- 0 0 52 49 56 SSSSSASSPPPKPKEPPEESSSPPPPPPPPPPPPPPPPPPPPPPPPPP
21 21 A N T < 5 + 0 0 80 49 24 NNNNNNSKNNNNNNNNNGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNN
22 22 A L < - 0 0 11 49 73 LLLLLLLLLLLYLYYHRYYYYYYYYYYYYYYYYYHHHHHHYHYYHYRR
23 23 A V E -C 32 0C 60 49 74 VVVVVVVVVVVTVTKVEKKAAAAAAAAAAAAAAAAAAAAAAAAAAAVV
24 24 A b E -C 31 0C 8 49 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
25 25 A S - 0 0 16 49 35 SSSSSSSSSSSSSSNSNNNNNNSSSSSSSSSSSSSSSSSSSSSSSSRR
26 26 A R S S+ 0 0 215 49 76 RRRRRRQRRRRRRRRSRRRSSSSSSSSSSSSSSSNNNNNNSNSGNSSV
27 27 A A S S+ 0 0 94 49 37 KKKKKKKKKTTRTRRKKRRRRRKKKKKKKKKKKKKKKKKKKKKKKKRR
28 28 A H S S- 0 0 146 49 40 HHHHHHHTDHHDHDDHHDDDDDHHHHHHHHHHHHHHHHHHHHHHHHDD
29 29 A R + 0 0 138 49 28 RRRRRRKRKKKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQQ
30 30 A W B S-B 8 0B 75 49 0 WWWRWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
31 31 A c E +C 24 0C 0 49 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
32 32 A K E -C 23 0C 54 49 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
33 33 A Y - 0 0 114 22 0 YYYYYYYYYYYYYYYYYYY YY
34 34 A E 0 0 147 17 61 EEEEEE QQ DKKKKK KK
35 35 A I 0 0 200 17 33 IIIIII II LLILLL LL
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 52 0 0 0 0 0 0 0 0 0 24 0 24 46 0 0 1.024 34 0.52
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
3 3 A 0 43 0 0 0 0 0 0 0 0 0 0 0 0 2 55 0 0 0 0 49 0 0 0.771 25 0.12
4 4 A 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 0 0 2 0 0 49 0 0 0.100 3 0.96
5 5 A 0 2 2 6 80 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.744 24 0.81
6 6 A 0 2 0 6 20 0 0 71 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.815 27 0.18
7 7 A 2 0 0 0 0 2 0 0 0 0 4 0 0 0 6 33 0 4 0 49 49 0 0 1.306 43 0.28
8 8 A 0 0 0 0 0 0 0 20 2 0 65 2 0 0 0 10 0 0 0 0 49 0 0 0.994 33 0.49
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
10 10 A 6 0 6 0 0 0 0 0 2 0 0 49 0 0 0 0 0 0 20 16 49 0 0 1.391 46 0.20
11 11 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 49 1 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 56 0 0 21 0 0 0 0 6 0 2 4 10 48 0 0 1.272 42 0.39
13 13 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 57 0 0 39 2 49 0 0 0.846 28 0.44
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 43 49 0 0 0.683 22 0.62
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 16 57 0 2 49 0 0 1.040 34 0.42
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 2 0 0 0 0 49 0 0 0.100 3 0.93
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 39 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 90 0 0 0 0 10 0 0 0.325 10 0.29
19 19 A 0 0 0 0 0 0 0 0 0 0 69 0 0 0 31 0 0 0 0 0 13 0 0 0.617 20 0.32
20 20 A 0 0 0 0 0 0 0 0 2 65 22 0 0 0 0 4 0 6 0 0 49 0 0 0.995 33 0.44
21 21 A 0 0 0 0 0 0 0 10 0 0 2 0 0 0 0 2 0 0 86 0 49 0 0 0.524 17 0.75
22 22 A 0 27 0 0 0 0 49 0 0 0 0 0 0 18 6 0 0 0 0 0 49 0 0 1.184 39 0.26
23 23 A 33 0 0 0 0 0 0 0 55 0 0 4 0 0 0 6 0 2 0 0 49 0 0 1.075 35 0.26
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 82 0 0 0 4 0 0 0 14 0 49 0 0 0.574 19 0.64
26 26 A 2 0 0 0 0 0 0 2 0 0 41 0 0 0 37 0 2 0 16 0 49 0 0 1.268 42 0.24
27 27 A 0 0 0 0 0 0 0 0 2 0 0 6 0 0 20 71 0 0 0 0 49 0 0 0.815 27 0.62
28 28 A 0 0 0 0 0 0 0 0 0 0 0 2 0 76 0 0 0 0 0 22 49 0 0 0.627 20 0.59
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 76 4 0 0 0 49 0 0 0.667 22 0.72
30 30 A 0 0 0 0 0 98 0 0 0 0 0 0 0 0 2 0 0 0 0 0 49 0 0 0.100 3 1.00
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 49 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 22 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 12 41 0 6 17 0 0 1.149 38 0.39
35 35 A 0 41 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 17 0 0 0.677 22 0.67
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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