Complet list of 1rkl hssp file
Complete list of 1rkl.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1RKL
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-07
HEADER TRANSFERASE 21-NOV-03 1RKL
COMPND MOL_ID: 1; MOLECULE: DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOS
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY S
AUTHOR S.ZUBKOV,W.J.LENNARZ,S.MOHANTY
DBREF 1RKL A 1 36 UNP Q99380 OST37_YEAST 1 36
SEQLENGTH 36
NCHAIN 1 chain(s) in 1RKL data set
NALIGN 33
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A6ZXA2_YEAS7 1.00 1.00 1 36 1 36 36 0 0 36 A6ZXA2 Oligosaccharyltransferase OS=Saccharomyces cerevisiae (strain YJM789) GN=OST4 PE=4 SV=1
2 : B3LHA8_YEAS1 1.00 1.00 1 36 1 36 36 0 0 36 B3LHA8 3.6 kDa protein OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_00719 PE=4 SV=1
3 : C7GJQ1_YEAS2 1.00 1.00 1 36 1 36 36 0 0 36 C7GJQ1 Ost4p OS=Saccharomyces cerevisiae (strain JAY291) GN=OST4 PE=4 SV=1
4 : C8Z6N8_YEAS8 1.00 1.00 1 36 1 36 36 0 0 36 C8Z6N8 Ost4p OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=EC1118_1D22_0210g PE=4 SV=1
5 : G2WBT7_YEASK 1.00 1.00 1 36 1 36 36 0 0 36 G2WBT7 K7_Ost4p OS=Saccharomyces cerevisiae (strain Kyokai no. 7 / NBRC 101557) GN=K7_OST4 PE=4 SV=1
6 : N1P441_YEASC 1.00 1.00 1 36 1 36 36 0 0 36 N1P441 Ost4p OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) GN=CENPK1137D_3732 PE=4 SV=1
7 : OST4_YEAST 1.00 1.00 1 36 1 36 36 0 0 36 Q99380 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit OST4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OST4 PE=1 SV=1
8 : W7PIZ2_YEASX 1.00 1.00 1 36 1 36 36 0 0 36 W7PIZ2 Ost4p OS=Saccharomyces cerevisiae R008 GN=Ost4 PE=4 SV=1
9 : J8Q453_SACAR 0.86 0.97 1 36 1 36 36 0 0 36 J8Q453 Ost4p OS=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) GN=SU7_0425 PE=4 SV=1
10 : I2H6I1_TETBL 0.72 0.83 1 36 1 36 36 0 0 38 I2H6I1 Uncharacterized protein OS=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) GN=TBLA0G00340 PE=4 SV=1
11 : J7R7C9_KAZNA 0.69 0.84 1 32 1 32 32 0 0 36 J7R7C9 Uncharacterized protein OS=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / CCRC 22969 / KCTC 17520 / NBRC 10181 / NCYC 3082) GN=KNAG0F01010 PE=4 SV=1
12 : G0VI07_NAUCC 0.66 0.83 1 35 1 35 35 0 0 37 G0VI07 Uncharacterized protein OS=Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) GN=NCAS0G01540 PE=4 SV=1
13 : A7TIC2_VANPO 0.64 0.83 1 36 1 36 36 0 0 36 A7TIC2 Putative uncharacterized protein OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1054p35 PE=4 SV=1
14 : G8ZLB8_TORDC 0.63 0.91 1 35 1 35 35 0 0 38 G8ZLB8 Uncharacterized protein OS=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) GN=TDEL0A00800 PE=4 SV=1
15 : H2APB4_KAZAF 0.63 0.90 2 31 1 30 30 0 0 33 H2APB4 Uncharacterized protein OS=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) GN=KAFR0A07800 PE=4 SV=1
16 : S6E6E4_ZYGB2 0.58 0.86 1 36 1 36 36 0 0 39 S6E6E4 ZYBA0S04-00980g1_1 OS=Zygosaccharomyces bailii (strain CLIB 213 / ATCC 58445 / CBS 680 / CCRC 21525 / NBRC 1098 / NCYC 1416 / NRRL Y-2227) GN=BN860_00980g PE=4 SV=1
17 : M9MWC3_ASHG1 0.57 0.79 1 28 1 28 28 0 0 41 M9MWC3 FABL170Cp OS=Ashbya gossypii (strain FDAG1) GN=FAGOS_FABL170C PE=4 SV=1
18 : Q75E40_ASHGO 0.57 0.79 1 28 1 28 28 0 0 41 Q75E40 ABL170Cp OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ABL170C PE=4 SV=1
19 : G8C1W8_TETPH 0.55 0.81 1 31 1 31 31 0 0 42 G8C1W8 Uncharacterized protein OS=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) GN=TPHA0O01790 PE=4 SV=1
20 : R9X8P8_ASHAC 0.54 0.79 1 28 1 28 28 0 0 42 R9X8P8 AaceriABL170Cp OS=Ashbya aceri GN=AACERI_AaceriABL170C PE=4 SV=1
21 : B4UMY5_CANGA 0.53 0.78 1 36 1 36 36 0 0 37 B4UMY5 Similar to uniprot|Q99380 Saccharomyces cerevisiae YDL232w OST4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0C05461g PE=4 SV=1
22 : C4YKQ7_CANAW 0.53 0.84 1 32 1 32 32 0 0 60 C4YKQ7 Predicted protein OS=Candida albicans (strain WO-1) GN=CAWG_06063 PE=4 SV=1
23 : G8JUP4_ERECY 0.53 0.83 1 36 1 36 36 0 0 41 G8JUP4 Uncharacterized protein OS=Eremothecium cymbalariae (strain CBS 270.75 / DBVPG 7215 / KCTC 17166 / NRRL Y-17582) GN=Ecym_6453 PE=4 SV=1
24 : H2AW69_KAZAF 0.53 0.78 1 36 1 36 36 0 0 52 H2AW69 Uncharacterized protein OS=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) GN=KAFR0F00220 PE=4 SV=1
25 : M3HPF5_CANMX 0.53 0.81 1 32 1 32 32 0 0 59 M3HPF5 Uncharacterized protein OS=Candida maltosa (strain Xu316) GN=G210_5877 PE=4 SV=1
26 : OST4_CANAX 0.53 0.84 1 32 1 32 32 0 0 60 Q9P838 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit OS=Candida albicans GN=OST4 PE=3 SV=1
27 : I1SAM9_GIBZE 0.52 0.72 1 29 1 29 29 0 0 48 I1SAM9 Uncharacterized protein OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FGSG_13910 PE=4 SV=1
28 : B5FV80_KLULA 0.50 0.83 1 36 1 36 36 0 0 39 B5FV80 KLLA0D19129p OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D19129g PE=4 SV=1
29 : C5M503_CANTT 0.50 0.81 1 32 1 32 32 0 0 63 C5M503 Predicted protein OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=CTRG_01981 PE=4 SV=1
30 : W0TEL3_KLUMA 0.50 0.83 1 36 1 36 36 0 0 38 W0TEL3 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase OS=Kluyveromyces marxianus DMKU3-1042 GN=KLMA_50597 PE=4 SV=1
31 : W6MQU0_9ASCO 0.50 0.86 1 36 1 36 36 0 0 37 W6MQU0 Genomic scaffold, Kuraishia_capsulata_scaffold_6 OS=Kuraishia capsulata CBS 1993 GN=KUCA_T00005091001 PE=4 SV=1
32 : G8BAL0_CANPC 0.47 0.79 1 34 1 34 34 0 0 41 G8BAL0 Putative uncharacterized protein OS=Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) GN=CPAR2_806330 PE=4 SV=1
33 : H8X3L9_CANO9 0.47 0.79 1 34 1 34 34 0 0 42 H8X3L9 Adhesin-like protein OS=Candida orthopsilosis (strain 90-125) GN=CORT_0C02810 PE=4 SV=1
## ALIGNMENTS 1 - 33
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 245 33 0 MMMMMMMMMMMMMM MMMMMMMMMMMMMMMMMM
2 2 A I - 0 0 148 34 3 IIIIIIIIIIIIIIMIIIIIIIIIIIIIIIIII
3 3 A S S S- 0 0 118 34 55 SSSSSSSSSSNSTNSNTTTTNTTNSTTSTSTSS
4 4 A D S S+ 0 0 162 34 2 DDDDDDDDDDDDDDDDDDDDEDDDDDDDDDDDD
5 5 A E > - 0 0 123 34 64 EEEEEEEEENAMDNSDSSESGENQSEGADADGS
6 6 A Q G > S+ 0 0 168 34 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
7 7 A L G > + 0 0 108 34 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
8 8 A N G <> + 0 0 128 34 12 NNNNNNNNNNNNNNNNNNNNQNNNNNYNNNNNN
9 9 A S H <> S+ 0 0 81 34 66 SSSSSSSSSSSAGTTTNNRNTTTDTTQTTTTTT
10 10 A L H <>>S+ 0 0 95 34 23 LLLLLLLLLLLMILLLLLLLLILIIILLILIII
11 11 A A H 45S+ 0 0 53 34 45 AAAAAAAATVVAVVATAAVAVAACAAAVAVAAA
12 12 A I H >X5S+ 0 0 123 34 23 IIIIIIIIIIILIIIIIILIILIILLILLLILL
13 13 A T H >X5S+ 0 0 104 34 61 TTTTTTTTTFFGISTTSSISGTSTTTFSTSTTT
14 14 A F H 3X5S+ 0 0 109 34 21 FFFFFFFFFFSFFLSCFFFFFFFFFFFFFFFFF
15 15 A G H <>X S+ 0 0 95 34 32 IIIIIIIIVIICIVVVLLVLVIFIVIVLILVVV
25 25 A Y H 3X>S+ 0 0 141 34 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
26 26 A H H 3<5S+ 0 0 87 34 23 HHHHHHHHHHHHHHHHYYHYHHYHHHHHHHQHH
27 27 A A H <45S+ 0 0 33 34 63 AAAAAAAAAVAAVATAFFTFAAIAAAFGAGFAA
28 28 A V H <5S+ 0 0 113 34 22 VVVVVVVVVVIVMIIIVVIVVIILIILIIIVII
29 29 A D T <5S+ 0 0 144 31 62 DDDDDDDDDDGDSSSS S ASDASSEQSQESS
30 30 A S S