Complet list of 1quz hssp file
Complete list of 1quz.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1QUZ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-07
HEADER TOXIN 05-JUL-99 1QUZ
COMPND MOL_ID: 1; MOLECULE: HSTX1 TOXIN; CHAIN: A; ENGINEERED: YES; OTHER_DET
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: SOLID PHASE CHEMICAL SYNTHES
AUTHOR P.SAVARIN,R.ROMI-LEBRUN,S.ZINN-JUSTIN,B.LEBRUN,T.NAKAJIMA, B.GILQUIN,A
DBREF 1QUZ A 1 34 UNP P59867 SCK1_HETSP 1 34
SEQLENGTH 34
NCHAIN 1 chain(s) in 1QUZ data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : KAX63_HETSP 1WPD 1.00 1.00 1 34 1 34 34 0 0 34 P59867 Potassium channel toxin alpha-KTx 6.3 OS=Heterometrus spinifer PE=1 SV=1
2 : I6NXS5_HETLA 0.97 0.97 1 34 1 34 34 0 0 35 I6NXS5 Kv1.3 potassium channel blocker (Fragment) OS=Heterometrus laoticus GN=Tx2 PE=2 SV=1
3 : KAX67_OPICA 0.88 0.94 3 34 29 60 32 0 0 61 Q6XLL8 Potassium channel toxin alpha-KTx 6.7 OS=Opistophthalmus carinatus PE=2 SV=1
4 : KAX66_OPICA 0.84 0.94 3 34 29 60 32 0 0 61 Q6XLL9 Potassium channel toxin alpha-KTx 6.6 OS=Opistophthalmus carinatus PE=2 SV=1
5 : KAX68_OPICA 0.78 0.94 3 34 29 60 32 0 0 61 Q6XLL7 Potassium channel toxin alpha-KTx 6.8 OS=Opistophthalmus carinatus PE=2 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 69 3 0 AA
2 2 A S - 0 0 68 3 0 SS
3 3 A a - 0 0 4 6 0 CCCCC
4 4 A R S S+ 0 0 164 6 0 RRRRR
5 5 A T S > S- 0 0 84 6 0 TTTTT
6 6 A P G > S+ 0 0 65 6 0 PPPPP
7 7 A K G > S+ 0 0 153 6 0 KKKKK
8 8 A D G < S+ 0 0 64 6 0 DDDDD
9 9 A b G <> S+ 0 0 0 6 0 CCCCC
10 10 A A H <> S+ 0 0 8 6 0 AAAAA
11 11 A D H > S+ 0 0 98 6 18 DDDGD
12 12 A P H > S+ 0 0 38 6 0 PPPPP
13 13 A c H X>S+ 0 0 0 6 0 CCCCC
14 14 A R H <5S+ 0 0 158 6 0 RRRRR
15 15 A K H <5S+ 0 0 182 6 0 KKKKK
16 16 A E H <5S+ 0 0 122 6 43 EEQQQ
17 17 A T T <5S- 0 0 78 6 0 TTTTT
18 18 A G S