Complet list of 1qfq hssp file
Complete list of 1qfq.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1QFQ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-07
HEADER TRANSCRIPTION/RNA 12-APR-99 1QFQ
COMPND MOL_ID: 1; MOLECULE: 36-MER N-TERMINAL PEPTIDE OF THE N PROTEIN; CHAIN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; ORGANISM_
AUTHOR M.SCHAERPF,H.STICHT,P.ROESCH
DBREF 1QFQ B 2 36 UNP P03045 REGN_LAMBD 2 36
DBREF 1QFQ A 1 15 PDB 1QFQ 1QFQ 1 15
SEQLENGTH 35
NCHAIN 1 chain(s) in 1QFQ data set
NALIGN 185
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A4KWR0_9VIRU 1.00 1.00 1 35 2 36 35 0 0 108 A4KWR0 Anti-termination protein N OS=Enterobacteria phage HK544 GN=N PE=4 SV=1
2 : A4KWR8_9VIRU 1.00 1.00 1 35 2 36 35 0 0 107 A4KWR8 Antitermination protein OS=Enterobacteria phage mEp332 GN=N PE=4 SV=1
3 : A4KWS5_9VIRU 1.00 1.00 1 35 2 36 35 0 0 108 A4KWS5 Antitermination protein OS=Enterobacteria phage HK244 GN=N PE=4 SV=1
4 : A4KWT3_9VIRU 1.00 1.00 1 35 2 36 35 0 0 108 A4KWT3 Anti-termination protein N OS=Enterobacteria phage HK542 GN=N PE=4 SV=1
5 : A4KWU1_9VIRU 1.00 1.00 1 35 2 36 35 0 0 108 A4KWU1 Antitermination protein OS=Enterobacteria phage CL707 GN=N PE=4 SV=1
6 : B3H963_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 B3H963 Antitermination protein N OS=Escherichia coli B7A GN=EcB7A_4152 PE=4 SV=1
7 : B3IAJ7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 B3IAJ7 Antitermination protein N OS=Escherichia coli E22 GN=EcE22_2691 PE=4 SV=1
8 : B6FK61_9CLOT 1.00 1.00 1 35 2 36 35 0 0 107 B6FK61 Antitermination protein N OS=Clostridium nexile DSM 1787 GN=n PE=4 SV=1
9 : B6WQR9_9DELT 1.00 1.00 1 35 2 36 35 0 0 107 B6WQR9 Antitermination protein N OS=Desulfovibrio piger ATCC 29098 GN=n PE=4 SV=1
10 : C0AQE2_9ENTR 1.00 1.00 1 35 2 36 35 0 0 107 C0AQE2 Antitermination protein N OS=Proteus penneri ATCC 35198 GN=n PE=4 SV=1
11 : C2ET38_9LACO 1.00 1.00 1 33 2 34 33 0 0 34 C2ET38 Antitermination protein N (Fragment) OS=Lactobacillus vaginalis ATCC 49540 GN=n PE=4 SV=1
12 : C2M8Y0_CAPGI 1.00 1.00 1 35 2 36 35 0 0 107 C2M8Y0 Antitermination protein N OS=Capnocytophaga gingivalis ATCC 33624 GN=n PE=4 SV=1
13 : C3Q864_9BACE 1.00 1.00 1 35 30 64 35 0 0 89 C3Q864 Putative antitermination protein N (Fragment) OS=Bacteroides sp. 9_1_42FAA GN=BSBG_04739 PE=4 SV=1
14 : C3XD54_OXAFO 1.00 1.00 1 35 28 62 35 0 0 123 C3XD54 Antitermination protein N (Fragment) OS=Oxalobacter formigenes OXCC13 GN=n PE=4 SV=1
15 : C5A0Y3_ECOBW 1.00 1.00 1 35 2 36 35 0 0 107 C5A0Y3 Lambda genome from map unit 74 backward to map unit 67 OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=BWG_3701 PE=4 SV=1
16 : C5EWV9_9FIRM 1.00 1.00 1 35 28 62 35 0 0 133 C5EWV9 Antitermination protein N OS=Clostridiales bacterium 1_7_47FAA GN=n PE=4 SV=1
17 : C5N227_STAA3 1.00 1.00 1 35 5 39 35 0 0 110 C5N227 Antitermination protein N (Fragment) OS=Staphylococcus aureus subsp. aureus USA300_TCH959 GN=n PE=4 SV=1
18 : D2ZME7_9ENTR 1.00 1.00 1 35 28 62 35 0 0 133 D2ZME7 Antitermination protein N OS=Enterobacter cancerogenus ATCC 35316 GN=n PE=4 SV=1
19 : D3GYC8_ECO44 1.00 1.00 1 35 2 36 35 0 0 108 D3GYC8 Prophage protein OS=Escherichia coli O44:H18 (strain 042 / EAEC) GN=EC042_0805 PE=4 SV=1
20 : D3QXH8_ECOCB 1.00 1.00 1 35 2 36 35 0 0 107 D3QXH8 Antitermination protein OS=Escherichia coli O55:H7 (strain CB9615 / EPEC) GN=G2583_0295 PE=4 SV=1
21 : D4CRL1_9FUSO 1.00 1.00 1 35 2 36 35 0 0 90 D4CRL1 Antitermination protein N (Fragment) OS=Fusobacterium periodonticum ATCC 33693 GN=n PE=4 SV=1
22 : D7X6Y3_ECOLX 1.00 1.00 1 35 20 54 35 0 0 126 D7X6Y3 Uncharacterized protein OS=Escherichia coli MS 198-1 GN=HMPREF9552_02393 PE=4 SV=1
23 : D7XV77_ECOLX 1.00 1.00 1 35 2 36 35 0 0 110 D7XV77 Uncharacterized protein OS=Escherichia coli MS 84-1 GN=HMPREF9536_05001 PE=4 SV=1
24 : D7YCJ6_ECOLX 1.00 1.00 1 35 20 54 35 0 0 128 D7YCJ6 Uncharacterized protein OS=Escherichia coli MS 182-1 GN=HMPREF9548_00237 PE=4 SV=1
25 : E1J6V4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 110 E1J6V4 Uncharacterized protein OS=Escherichia coli MS 124-1 GN=HMPREF9347_02643 PE=4 SV=1
26 : E5ZRN4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 E5ZRN4 Uncharacterized protein OS=Escherichia coli MS 110-3 GN=HMPREF9539_01827 PE=4 SV=1
27 : E6BDD1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 110 E6BDD1 Uncharacterized protein OS=Escherichia coli MS 85-1 GN=HMPREF9350_00091 PE=4 SV=1
28 : E7I1Y3_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 E7I1Y3 Antitermination protein N OS=Escherichia coli E128010 GN=ECE128010_4989 PE=4 SV=1
29 : E8II52_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 E8II52 Antitermination protein OS=Escherichia coli O55:H7 str. 3256-97 GN=ECO7815_11603 PE=4 SV=1
30 : E8IWP4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 E8IWP4 Antitermination protein OS=Escherichia coli O55:H7 str. USDA 5905 GN=ECO5905_13304 PE=4 SV=1
31 : F0JV69_ESCFE 1.00 1.00 1 35 2 36 35 0 0 108 F0JV69 Antitermination protein OS=Escherichia fergusonii ECD227 GN=n PE=4 SV=1
32 : F4UP82_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 F4UP82 Antitermination protein N (Nucleocapsid protein) (PN) (Regulatoryprotein N) OS=Escherichia coli TA271 GN=ECLG_00853 PE=4 SV=1
33 : F4VEF8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 F4VEF8 Antitermination protein N (Nucleocapsid protein) (PN) (Regulatoryprotein N) OS=Escherichia coli H591 GN=ECPG_01011 PE=4 SV=1
34 : F4VST5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 F4VST5 Antitermination protein N (Nucleocapsid protein) (PN) (Regulatoryprotein N) OS=Escherichia coli H299 GN=ECOG_05184 PE=4 SV=1
35 : G1ZG51_ECOLX 1.00 1.00 1 35 2 36 35 0 0 73 G1ZG51 Antitermination protein N domain protein (Fragment) OS=Escherichia coli 3030-1 GN=EC30301_0840 PE=4 SV=1
36 : G1ZTL0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 G1ZTL0 Antitermination protein N OS=Escherichia coli 3030-1 GN=EC30301_5376 PE=4 SV=1
37 : G2BQL1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 G2BQL1 Antitermination protein N OS=Escherichia coli STEC_H.1.8 GN=ECSTECH18_2623 PE=4 SV=1
38 : G2BR89_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 G2BR89 Antitermination protein N OS=Escherichia coli STEC_H.1.8 GN=ECSTECH18_3052 PE=4 SV=1
39 : G2CH39_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 G2CH39 Antitermination protein N OS=Escherichia coli STEC_S1191 GN=ECSTECS1191_1290 PE=4 SV=1
40 : H1EF54_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 H1EF54 Antitermination protein N OS=Escherichia coli H397 GN=ESPG_00218 PE=4 SV=1
41 : H4SM49_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H4SM49 Antitermination protein N OS=Escherichia coli DEC5B GN=ECDEC5B_0422 PE=4 SV=1
42 : H4T4Z0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H4T4Z0 Antitermination protein N OS=Escherichia coli DEC5C GN=ECDEC5C_0292 PE=4 SV=1
43 : H4TIV5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H4TIV5 Antitermination protein N OS=Escherichia coli DEC5D GN=ECDEC5D_0586 PE=4 SV=1
44 : H5G8J1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5G8J1 Antitermination protein N OS=Escherichia coli DEC11A GN=ECDEC11A_0585 PE=4 SV=1
45 : H5GNN5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5GNN5 Antitermination protein N OS=Escherichia coli DEC11B GN=ECDEC11B_0646 PE=4 SV=1
46 : H5HLT3_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5HLT3 Antitermination protein N OS=Escherichia coli DEC11D GN=ECDEC11D_0888 PE=4 SV=1
47 : H5HZC8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5HZC8 Antitermination protein N OS=Escherichia coli DEC11E GN=ECDEC11E_0258 PE=4 SV=1
48 : H5IG31_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5IG31 Antitermination protein N OS=Escherichia coli DEC12A GN=ECDEC12A_0960 PE=4 SV=1
49 : H5IXI8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5IXI8 Antitermination protein N OS=Escherichia coli DEC12B GN=ECDEC12B_1014 PE=4 SV=1
50 : H5JEZ8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5JEZ8 Antitermination protein N OS=Escherichia coli DEC12C GN=ECDEC12C_0929 PE=4 SV=1
51 : H5JVB4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H5JVB4 Antitermination protein N OS=Escherichia coli DEC12D GN=ECDEC12D_0922 PE=4 SV=1
52 : H5K095_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 H5K095 Antitermination protein N OS=Escherichia coli DEC12D GN=ECDEC12D_2676 PE=4 SV=1
53 : H6MLK1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 H6MLK1 Antitermination protein OS=Escherichia coli O55:H7 str. RM12579 GN=ECO55CA74_01400 PE=4 SV=1
54 : H9UR22_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 H9UR22 Uncharacterized protein OS=Escherichia coli P12b GN=P12B_c1097 PE=4 SV=1
55 : I0V9Q5_SHIFL 1.00 1.00 1 35 2 36 35 0 0 107 I0V9Q5 Putative bacteriophage protein OS=Shigella flexneri 5a str. M90T GN=SF5M90T_268 PE=4 SV=1
56 : I2RML3_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 I2RML3 Antitermination protein N OS=Escherichia coli 1.2741 GN=n PE=4 SV=1
57 : I2TMY9_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I2TMY9 Antitermination protein N OS=Escherichia coli 3.2608 GN=n PE=4 SV=1
58 : I2U9R6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I2U9R6 Antitermination protein N OS=Escherichia coli 93.0624 GN=n PE=4 SV=1
59 : I2W352_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I2W352 Antitermination protein N OS=Escherichia coli 5.0959 GN=n PE=4 SV=1
60 : I2WS63_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I2WS63 Antitermination protein N OS=Escherichia coli 4.0967 GN=n PE=4 SV=1
61 : I2XRV0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I2XRV0 Antitermination protein N OS=Escherichia coli 3.3884 GN=n PE=4 SV=1
62 : I4NC20_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I4NC20 Bacteriophage protein OS=Escherichia coli O103:H25 str. CVM9340 GN=ECO9340_10268 PE=4 SV=1
63 : I4NH66_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I4NH66 Bacteriophage protein OS=Escherichia coli O103:H2 str. CVM9450 GN=ECO9450_13480 PE=4 SV=1
64 : I4S360_ECOLX 1.00 1.00 1 35 2 36 35 0 0 52 I4S360 Putative bacteriophage protein (Fragment) OS=Escherichia coli KD2 GN=ECKD2_23788 PE=4 SV=1
65 : I6DNQ8_SHIFL 1.00 1.00 1 35 2 36 35 0 0 108 I6DNQ8 Antitermination protein N OS=Shigella flexneri K-404 GN=SFK404_0447 PE=4 SV=1
66 : I6GTR2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I6GTR2 Antitermination protein N OS=Escherichia coli EPEC C342-62 GN=ECEPECC34262_1315 PE=4 SV=1
67 : I6GU69_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 I6GU69 Antitermination protein N OS=Escherichia coli EPEC C342-62 GN=ECEPECC34262_1016 PE=4 SV=1
68 : J3JZZ6_LAMBD 1.00 1.00 1 35 28 62 35 0 0 133 J3JZZ6 Gene N of bacteriophage lambda. (N-protein may be needed for antitermination.) OS=Enterobacteria phage lambda PE=4 SV=1
69 : K3GL47_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 K3GL47 Antitermination protein N OS=Escherichia coli 5905 GN=EC5905_0479 PE=4 SV=1
70 : K3IM84_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 K3IM84 Antitermination protein N OS=Escherichia coli ARS4.2123 GN=ECARS42123_2808 PE=4 SV=1
71 : K3K5U4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 K3K5U4 Antitermination protein N OS=Escherichia coli 07798 GN=EC07798_0326 PE=4 SV=1
72 : K5GK97_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 K5GK97 Antitermination protein N OS=Escherichia coli 8.0566 GN=EC80566_2471 PE=4 SV=1
73 : K5HQ91_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 K5HQ91 Antitermination protein N OS=Escherichia coli 8.0569 GN=EC80569_2434 PE=4 SV=1
74 : K7P718_9CAUD 1.00 1.00 1 35 2 36 35 0 0 107 K7P718 Anti-termination protein N OS=Enterobacteria phage HK446 GN=HK446_038 PE=4 SV=1
75 : K7P7F1_9CAUD 1.00 1.00 1 35 2 36 35 0 0 108 K7P7F1 Anti-termination protein N OS=Enterobacteria phage HK633 GN=HK633_046 PE=4 SV=1
76 : K7PHQ7_9CAUD 1.00 1.00 1 35 2 36 35 0 0 108 K7PHQ7 Antitermination protein N OS=Enterobacteria phage mEp043 c-1 GN=mEp043_048 PE=4 SV=1
77 : K7PJZ2_9CAUD 1.00 1.00 1 35 2 36 35 0 0 110 K7PJZ2 Antitermination protein N OS=Enterobacterial phage mEp213 GN=mEp213_051 PE=4 SV=1
78 : L2WUG6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L2WUG6 Antitermination protein N OS=Escherichia coli KTE16 GN=WCY_01432 PE=4 SV=1
79 : L2YDQ9_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L2YDQ9 Antitermination protein N OS=Escherichia coli KTE28 GN=WEO_02640 PE=4 SV=1
80 : L3EYR1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L3EYR1 Antitermination protein N OS=Escherichia coli KTE212 GN=A15Y_02296 PE=4 SV=1
81 : L3QY19_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 L3QY19 Antitermination protein N OS=Escherichia coli KTE77 GN=A1UQ_01163 PE=4 SV=1
82 : L3UJ73_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 L3UJ73 Antitermination protein N OS=Escherichia coli KTE119 GN=A1Y7_03006 PE=4 SV=1
83 : L3YGJ4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L3YGJ4 Antitermination protein N OS=Escherichia coli KTE17 GN=WE1_02882 PE=4 SV=1
84 : L3ZEE8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 L3ZEE8 Antitermination protein N OS=Escherichia coli KTE45 GN=WGK_01545 PE=4 SV=1
85 : L4BAA4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L4BAA4 Antitermination protein N OS=Escherichia coli KTE22 GN=WEA_02189 PE=4 SV=1
86 : L4BXC5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 L4BXC5 Antitermination protein N OS=Escherichia coli KTE46 GN=A1S1_00902 PE=4 SV=1
87 : L4DWH4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L4DWH4 Antitermination protein N OS=Escherichia coli KTE65 GN=A1U3_02395 PE=4 SV=1
88 : L4EWN3_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 L4EWN3 Antitermination protein N OS=Escherichia coli KTE84 GN=A1W3_02533 PE=4 SV=1
89 : L4GC88_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L4GC88 Antitermination protein N OS=Escherichia coli KTE118 GN=A1Y5_03328 PE=4 SV=1
90 : L4GNT5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L4GNT5 Antitermination protein N OS=Escherichia coli KTE123 GN=A1YA_04585 PE=4 SV=1
91 : L4R984_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L4R984 Antitermination protein N OS=Escherichia coli KTE217 GN=A179_03213 PE=4 SV=1
92 : L5BBW6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L5BBW6 Antitermination protein N OS=Escherichia coli KTE150 GN=WK9_01511 PE=4 SV=1
93 : L5G824_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 L5G824 Antitermination protein N OS=Escherichia coli KTE232 GN=WGQ_02183 PE=4 SV=1
94 : M2N7T5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 M2N7T5 Uncharacterized protein OS=Escherichia coli SEPT362 GN=A364_04321 PE=4 SV=1
95 : M8QJ21_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 M8QJ21 Antitermination protein N OS=Escherichia coli BCE002_MS12 GN=ECBCE002MS12_2549 PE=4 SV=1
96 : M8QZI6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 M8QZI6 Antitermination protein N OS=Escherichia coli BCE002_MS12 GN=ECBCE002MS12_2452 PE=4 SV=1
97 : M9EWJ5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 M9EWJ5 Antitermination protein N OS=Escherichia coli 174750 GN=EC174750_0684 PE=4 SV=1
98 : M9F805_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 M9F805 Antitermination protein N OS=Escherichia coli 174750 GN=EC174750_5494 PE=4 SV=1
99 : M9HYR1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 M9HYR1 Antitermination protein N OS=Escherichia coli Jurua 20/10 GN=ECJURUA2010_2512 PE=4 SV=1
100 : M9L9A3_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 M9L9A3 Antitermination protein N OS=Escherichia coli BCE001_MS16 GN=ECBCE001MS16_2459 PE=4 SV=1
101 : M9LF06_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 M9LF06 Antitermination protein N OS=Escherichia coli BCE001_MS16 GN=ECBCE001MS16_0691 PE=4 SV=1
102 : N2DKW2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 N2DKW2 Antitermination protein N OS=Escherichia coli 174900 GN=EC174900_2643 PE=4 SV=1
103 : N3BJZ2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3BJZ2 Antitermination protein N OS=Escherichia coli P0299917.10 GN=ECP029991710_5299 PE=4 SV=1
104 : N3BLE8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3BLE8 Antitermination protein N OS=Escherichia coli P0299917.3 GN=ECP02999173_4743 PE=4 SV=1
105 : N3BPC2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3BPC2 Antitermination protein N OS=Escherichia coli P0299917.2 GN=ECP02999172_0845 PE=4 SV=1
106 : N3CBS6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3CBS6 Antitermination protein N OS=Escherichia coli P0299917.5 GN=ECP02999175_5221 PE=4 SV=1
107 : N3CCT1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3CCT1 Antitermination protein N OS=Escherichia coli P0299917.4 GN=ECP02999174_2751 PE=4 SV=1
108 : N3D9A2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3D9A2 Antitermination protein N OS=Escherichia coli P0299917.7 GN=ECP02999177_5293 PE=4 SV=1
109 : N3DNF6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3DNF6 Antitermination protein N OS=Escherichia coli P0299917.8 GN=ECP02999178_1218 PE=4 SV=1
110 : N3DNN4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3DNN4 Antitermination protein N OS=Escherichia coli P0299917.6 GN=ECP02999176_1194 PE=4 SV=1
111 : N3F0R7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 N3F0R7 Antitermination protein N OS=Escherichia coli P0299917.9 GN=ECP02999179_1209 PE=4 SV=1
112 : Q0T7T1_SHIF8 1.00 1.00 1 35 2 36 35 0 0 107 Q0T7T1 Putative bacteriophage protein OS=Shigella flexneri serotype 5b (strain 8401) GN=SFV_0269 PE=4 SV=1
113 : Q38265_LAMBD 1.00 1.00 1 35 2 36 35 0 0 107 Q38265 Lambda genome from map unit 74 backward to map unit 67 OS=Enterobacteria phage lambda PE=4 SV=1
114 : Q716D8_BPSFV 1.00 1.00 1 35 2 36 35 0 0 110 Q716D8 Gene 37 protein OS=Enterobacteria phage Sf6 GN=37 PE=4 SV=1
115 : REGN_LAMBD 1QFQ 1.00 1.00 1 35 2 36 35 0 0 107 P03045 Antitermination protein N OS=Enterobacteria phage lambda GN=N PE=1 SV=3
116 : S0U8H0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 S0U8H0 Antitermination protein N OS=Escherichia coli KTE231 GN=WC9_02179 PE=4 SV=1
117 : S1CGY7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 S1CGY7 Antitermination protein N OS=Escherichia coli KTE52 GN=A1SC_01590 PE=4 SV=1
118 : S1HF72_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 S1HF72 Antitermination protein N OS=Escherichia coli KTE102 GN=A1WO_03353 PE=4 SV=1
119 : T2N0Y4_9ESCH 1.00 1.00 1 35 2 36 35 0 0 82 T2N0Y4 Antitermination protein N (Fragment) OS=Escherichia sp. 1_1_43 GN=ESCG_04778 PE=4 SV=1
120 : T5N024_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T5N024 Antitermination protein N OS=Escherichia coli HVH 1 (4-6876161) GN=G681_01020 PE=4 SV=1
121 : T5RJ14_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T5RJ14 Antitermination protein N OS=Escherichia coli HVH 13 (4-7634056) GN=G691_00291 PE=4 SV=1
122 : T5WJ05_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T5WJ05 Antitermination protein N OS=Escherichia coli HVH 30 (4-2661829) GN=G706_02357 PE=4 SV=1
123 : T5XJJ5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T5XJJ5 Antitermination protein N OS=Escherichia coli HVH 35 (4-2962667) GN=G710_02462 PE=4 SV=1
124 : T6IIR2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T6IIR2 Antitermination protein N OS=Escherichia coli HVH 76 (4-2538717) GN=G739_02463 PE=4 SV=1
125 : T6JIQ1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T6JIQ1 Antitermination protein N OS=Escherichia coli HVH 79 (4-2512823) GN=G742_00828 PE=4 SV=1
126 : T6LND1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T6LND1 Antitermination protein N OS=Escherichia coli HVH 88 (4-5854636) GN=G750_02479 PE=4 SV=1
127 : T6MN26_ECOLX 1.00 1.00 1 35 2 36 35 0 0 110 T6MN26 Antitermination protein N OS=Escherichia coli HVH 91 (4-4638751) GN=G753_02399 PE=4 SV=1
128 : T6NXM2_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T6NXM2 Antitermination protein N OS=Escherichia coli HVH 100 (4-2850729) GN=G761_04394 PE=4 SV=1
129 : T7S5T0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T7S5T0 Antitermination protein N OS=Escherichia coli HVH 192 (4-3054470) GN=G844_02476 PE=4 SV=1
130 : T7V9E6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T7V9E6 Antitermination protein N OS=Escherichia coli HVH 199 (4-5670322) GN=G851_02460 PE=4 SV=1
131 : T7ZER8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T7ZER8 Antitermination protein N OS=Escherichia coli HVH 211 (4-3041891) GN=G863_02472 PE=4 SV=1
132 : T8M966_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T8M966 Antitermination protein N OS=Escherichia coli UMEA 3022-1 GN=G899_02430 PE=4 SV=1
133 : T8Q9U0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T8Q9U0 Antitermination protein N OS=Escherichia coli UMEA 3097-1 GN=G907_02251 PE=4 SV=1
134 : T8SW82_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T8SW82 Antitermination protein N OS=Escherichia coli UMEA 3139-1 GN=G914_00780 PE=4 SV=1
135 : T8T8V0_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T8T8V0 Antitermination protein N OS=Escherichia coli UMEA 3152-1 GN=G920_00743 PE=4 SV=1
136 : T8XHY7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T8XHY7 Antitermination protein N OS=Escherichia coli UMEA 3176-1 GN=G931_02481 PE=4 SV=1
137 : T8YC11_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T8YC11 Antitermination protein N OS=Escherichia coli UMEA 3178-1 GN=G932_00339 PE=4 SV=1
138 : T9A1H1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T9A1H1 Antitermination protein N OS=Escherichia coli UMEA 3199-1 GN=G937_02528 PE=4 SV=1
139 : T9I8N9_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 T9I8N9 Antitermination protein N OS=Escherichia coli UMEA 3317-1 GN=G964_02874 PE=4 SV=1
140 : T9S0Z7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T9S0Z7 Antitermination protein N OS=Escherichia coli UMEA 3687-1 GN=G987_00711 PE=4 SV=1
141 : T9SPD4_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T9SPD4 Antitermination protein N OS=Escherichia coli UMEA 3705-1 GN=G992_00302 PE=4 SV=1
142 : T9ZVT5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 T9ZVT5 Antitermination protein N OS=Escherichia coli HVH 210 (4-3042480) GN=G862_02475 PE=4 SV=1
143 : U5M098_ECOLI 1.00 1.00 1 35 28 62 35 0 0 133 U5M098 Early gene regulator OS=Escherichia coli C321.deltaA GN=N PE=4 SV=1
144 : V0YBY5_ECOLX 1.00 1.00 1 35 2 36 35 0 0 110 V0YBY5 Antitermination protein OS=Escherichia coli 908525 GN=HMPREF1608_03061 PE=4 SV=1
145 : V3IS14_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V3IS14 Antitermination protein N OS=Escherichia coli BWH 32 GN=L403_00890 PE=4 SV=1
146 : V4G4K6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V4G4K6 Antitermination protein N OS=Escherichia coli UMEA 3148-1 GN=G917_02588 PE=4 SV=1
147 : V6NTJ1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V6NTJ1 Putative bacteriophage protein OS=Escherichia coli P4-NR GN=MOI_01222 PE=4 SV=1
148 : V6NXM1_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V6NXM1 Putative bacteriophage protein OS=Escherichia coli P4-96 GN=M13_01217 PE=4 SV=1
149 : V6P505_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V6P505 Putative bacteriophage protein OS=Escherichia coli ECA-727 GN=ECA727_16680 PE=4 SV=1
150 : V8S3M7_ECOLX 1.00 1.00 1 35 2 36 35 0 0 108 V8S3M7 Antitermination protein N OS=Escherichia coli HVH 83 (4-2051087) GN=G745_03140 PE=4 SV=1
151 : V8SW12_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 V8SW12 Antitermination protein N OS=Escherichia coli HVH 23 (4-6066488) GN=G699_00522 PE=4 SV=1
152 : W0KTV6_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 W0KTV6 Phage antitermination protein N OS=Escherichia coli O145:H28 str. RM13516 GN=ECRM13516_0758 PE=4 SV=1
153 : W0ZJ89_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 W0ZJ89 Phage antitermination protein N OS=Escherichia coli IS9 PE=4 SV=1
154 : W1TDG8_ECOLX 1.00 1.00 1 35 2 36 35 0 0 107 W1TDG8 Antitermination protein OS=Escherichia coli ATCC BAA-2219 GN=Q460_04740 PE=4 SV=1
155 : E9TC82_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 E9TC82 Uncharacterized protein OS=Escherichia coli MS 117-3 GN=HMPREF9542_01378 PE=4 SV=1
156 : E9Z5T4_ESCFE 0.97 1.00 1 35 2 36 35 0 0 108 E9Z5T4 Antitermination protein N OS=Escherichia fergusonii B253 GN=ERIG_01186 PE=4 SV=1
157 : F5M7D0_ECOLX 0.97 1.00 1 35 2 36 35 0 0 107 F5M7D0 Phage antitermination protein N OS=Escherichia coli AA86 GN=ECAA86_01082 PE=4 SV=1
158 : G1ZTS4_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 G1ZTS4 Antitermination protein N OS=Escherichia coli 3030-1 GN=EC30301_5440 PE=4 SV=1
159 : G1ZZR4_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 G1ZZR4 Antitermination protein N OS=Escherichia coli STEC_94C GN=ECSTEC94C_2805 PE=4 SV=1
160 : I4SLT0_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 I4SLT0 Uncharacterized protein OS=Escherichia coli 541-15 GN=EC54115_15969 PE=4 SV=1
161 : I4UMW3_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 I4UMW3 Putative bacteriophage protein OS=Escherichia coli CUMT8 GN=ECMT8_15046 PE=4 SV=1
162 : J2FM84_SHIFL 0.97 1.00 1 35 2 36 35 0 0 108 J2FM84 Antitermination protein N OS=Shigella flexneri 6603-63 GN=SF660363_0194 PE=4 SV=1
163 : L2V743_ECOLX 0.97 0.97 1 35 2 36 35 0 0 110 L2V743 Antitermination protein N OS=Escherichia coli KTE10 GN=WCM_02686 PE=4 SV=1
164 : L2VXL9_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 L2VXL9 Antitermination protein N OS=Escherichia coli KTE12 GN=WCQ_02445 PE=4 SV=1
165 : L3EIY1_ECOLX 0.97 1.00 1 35 2 36 35 0 0 107 L3EIY1 Antitermination protein N OS=Escherichia coli KTE210 GN=A15U_01009 PE=4 SV=1
166 : L3Q223_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 L3Q223 Antitermination protein N OS=Escherichia coli KTE75 GN=A1UM_02946 PE=4 SV=1
167 : L3XDX3_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 L3XDX3 Antitermination protein N OS=Escherichia coli KTE6 GN=WCG_04387 PE=4 SV=1
168 : M8YG79_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 M8YG79 Antitermination protein N OS=Escherichia coli 2848050 GN=EC2848050_2673 PE=4 SV=1
169 : N1TH10_ECOLX 0.97 0.97 1 35 2 36 35 0 0 107 N1TH10 Antitermination protein N OS=Escherichia coli 2726800 GN=EC2726800_0947 PE=4 SV=1
170 : N2IAL6_ECOLX 0.97 1.00 1 35 2 36 35 0 0 107 N2IAL6 Antitermination protein N OS=Escherichia coli 201600.1 GN=EC2016001_1245 PE=4 SV=1
171 : N3JVF3_ECOLX 0.97 0.97 1 35 2 36 35 0 0 107 N3JVF3 Antitermination protein N OS=Escherichia coli 2854350 GN=EC2854350_0844 PE=4 SV=1
172 : S0SQH9_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 S0SQH9 Antitermination protein N OS=Escherichia coli KTE13 GN=WAY_02411 PE=4 SV=1
173 : T5U2F0_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 T5U2F0 Antitermination protein N OS=Escherichia coli HVH 24 (4-5985145) GN=G700_01747 PE=4 SV=1
174 : T6M7C6_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 T6M7C6 Antitermination protein N OS=Escherichia coli HVH 90 (4-3191362) GN=G752_02286 PE=4 SV=1
175 : T6V5K0_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 T6V5K0 Antitermination protein N OS=Escherichia coli HVH 115 (4-4465989) GN=G777_01290 PE=4 SV=1
176 : T6VQV6_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 T6VQV6 Antitermination protein N OS=Escherichia coli HVH 115 (4-4465997) GN=G776_00339 PE=4 SV=1
177 : T7HXR6_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 T7HXR6 Antitermination protein N OS=Escherichia coli HVH 154 (4-5636698) GN=G812_02384 PE=4 SV=1
178 : T7WIL5_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 T7WIL5 Antitermination protein N OS=Escherichia coli HVH 202 (4-3163997) GN=G854_02389 PE=4 SV=1
179 : T8ITV5_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 T8ITV5 Antitermination protein N OS=Escherichia coli KOEGE 70 (185a) GN=G892_02319 PE=4 SV=1
180 : T9JRI5_ECOLX 0.97 0.97 1 35 2 36 35 0 0 107 T9JRI5 Antitermination protein N OS=Escherichia coli UMEA 3329-1 GN=G967_00711 PE=4 SV=1
181 : U0D119_ECOLX 0.97 1.00 1 35 2 36 35 0 0 108 U0D119 Antitermination protein N OS=Escherichia coli UMEA 3271-1 GN=G958_02237 PE=4 SV=1
182 : V6ELZ1_ECOLX 0.97 1.00 1 35 2 36 35 0 0 110 V6ELZ1 Phage antitermination protein N OS=Escherichia coli IS5 PE=4 SV=1
183 : M1FJ69_9CAUD 0.94 0.97 1 35 2 36 35 0 0 110 M1FJ69 Antitermination protein N OS=Enterobacteria phage SfI GN=N PE=4 SV=1
184 : L6Y0X2_SALEN 0.91 0.97 1 35 2 36 35 0 0 110 L6Y0X2 Bacteriophage protein OS=Salmonella enterica subsp. enterica serovar Enteritidis str. SARB17 GN=SEEERB17_010017 PE=4 SV=1
185 : D3R8Z0_KLEVT 0.86 0.91 1 35 2 36 35 0 0 107 D3R8Z0 Putative bacteriophage protein OS=Klebsiella variicola (strain At-22) GN=Kvar_1766 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 2 B D 0 0 173 186 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 3 B A > + 0 0 70 186 7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 4 B Q H > S+ 0 0 114 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
4 5 B T H > S+ 0 0 81 186 41 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5 6 B R H >> S+ 0 0 147 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 7 B R H 3X S+ 0 0 66 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
7 8 B R H >< S+ 0 0 97 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
8 9 B E H X< S+ 0 0 157 186 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 10 B R H >< S+ 0 0 173 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
10 11 B R T XX S+ 0 0 91 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
11 12 B A H <> S+ 0 0 52 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12 13 B E H <> S+ 0 0 145 186 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
13 14 B K H <> S+ 0 0 143 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
14 15 B Q H X S+ 0 0 69 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
15 16 B A H X S+ 0 0 57 186 5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16 17 B Q H X S+ 0 0 137 186 15 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
17 18 B W H >< S+ 0 0 100 186 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
18 19 B K H >< S+ 0 0 108 186 1 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
19 20 B A H 3< S+ 0 0 75 186 17 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
20 21 B A T << S+ 0 0 69 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 22 B N X + 0 0 38 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
22 23 B P G > S+ 0 0 32 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
23 24 B L G 3 S+ 0 0 113 186 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
24 25 B L G < S+ 0 0 121 186 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
25 26 B V S < S- 0 0 43 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
26 27 B G S S- 0 0 59 186 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27 28 B V S S+ 0 0 130 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
28 29 B S S S+ 0 0 103 186 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
29 30 B A + 0 0 47 186 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30 31 B K - 0 0 129 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
31 32 B P - 0 0 113 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
32 33 B V - 0 0 106 186 25 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
33 34 B N S S+ 0 0 166 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
34 35 B R 0 0 207 185 6 RRRRRRRRRR RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
35 36 B P 0 0 196 185 0 PPPPPPPPPP PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 2 B D 0 0 173 186 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 3 B A > + 0 0 70 186 7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3 4 B Q H > S+ 0 0 114 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
4 5 B T H > S+ 0 0 81 186 41 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
5 6 B R H >> S+ 0 0 147 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 7 B R H 3X S+ 0 0 66 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
7 8 B R H >< S+ 0 0 97 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
8 9 B E H X< S+ 0 0 157 186 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 10 B R H >< S+ 0 0 173 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
10 11 B R T XX S+ 0 0 91 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
11 12 B A H <> S+ 0 0 52 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12 13 B E H <> S+ 0 0 145 186 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
13 14 B K H <> S+ 0 0 143 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
14 15 B Q H X S+ 0 0 69 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
15 16 B A H X S+ 0 0 57 186 5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16 17 B Q H X S+ 0 0 137 186 15 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
17 18 B W H >< S+ 0 0 100 186 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
18 19 B K H >< S+ 0 0 108 186 1 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
19 20 B A H 3< S+ 0 0 75 186 17 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
20 21 B A T << S+ 0 0 69 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 22 B N X + 0 0 38 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
22 23 B P G > S+ 0 0 32 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
23 24 B L G 3 S+ 0 0 113 186 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
24 25 B L G < S+ 0 0 121 186 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
25 26 B V S < S- 0 0 43 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
26 27 B G S S- 0 0 59 186 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27 28 B V S S+ 0 0 130 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
28 29 B S S S+ 0 0 103 186 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
29 30 B A + 0 0 47 186 2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30 31 B K - 0 0 129 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
31 32 B P - 0 0 113 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
32 33 B V - 0 0 106 186 25 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
33 34 B N S S+ 0 0 166 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
34 35 B R 0 0 207 185 6 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
35 36 B P 0 0 196 185 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
## ALIGNMENTS 141 - 185
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 2 B D 0 0 173 186 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 3 B A > + 0 0 70 186 7 AAAAAAAAAAAAAAAAAAAAASASAAAAAAASAAAAAAAAAAAAA
3 4 B Q H > S+ 0 0 114 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
4 5 B T H > S+ 0 0 81 186 41 TTTTTTTTTTTTTTTTTAAAATTTAATATTTTTTAATTTTTAAAS
5 6 B R H >> S+ 0 0 147 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
6 7 B R H 3X S+ 0 0 66 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
7 8 B R H >< S+ 0 0 97 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
8 9 B E H X< S+ 0 0 157 186 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 10 B R H >< S+ 0 0 173 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
10 11 B R T XX S+ 0 0 91 186 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
11 12 B A H <> S+ 0 0 52 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12 13 B E H <> S+ 0 0 145 186 12 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEA
13 14 B K H <> S+ 0 0 143 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
14 15 B Q H X S+ 0 0 69 186 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
15 16 B A H X S+ 0 0 57 186 5 AAAAAAAAAAAAAAAAAAAAAAVAAAAAATAAAAAAAAAAAAAAA
16 17 B Q H X S+ 0 0 137 186 15 QQQQQQQQQQQQQQKEQQQQQQQQQQQQQQQQQQQQQQQQQQQEE
17 18 B W H >< S+ 0 0 100 186 0 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
18 19 B K H >< S+ 0 0 108 186 1 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKK
19 20 B A H 3< S+ 0 0 75 186 17 AAAAAAAAAAAAAAAAAAAAAAAAAATAVAVAATAATTAVAAAAA
20 21 B A T << S+ 0 0 69 186 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
21 22 B N X + 0 0 38 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
22 23 B P G > S+ 0 0 32 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
23 24 B L G 3 S+ 0 0 113 186 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
24 25 B L G < S+ 0 0 121 186 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLS
25 26 B V S < S- 0 0 43 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
26 27 B G S S- 0 0 59 186 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
27 28 B V S S+ 0 0 130 186 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
28 29 B S S S+ 0 0 103 186 2 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSS
29 30 B A + 0 0 47 186 2 AAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30 31 B K - 0 0 129 186 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
31 32 B P - 0 0 113 186 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
32 33 B V - 0 0 106 186 25 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVND
33 34 B N S S+ 0 0 166 186 0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
34 35 B R 0 0 207 185 6 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRCRR
35 36 B P 0 0 196 185 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 2 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 186 0 0 0.000 0 1.00
2 3 B 0 0 0 0 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 186 0 0 0.083 2 0.93
3 4 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 186 0 0 0.000 0 1.00
4 5 B 0 0 0 0 0 0 0 0 6 0 1 93 0 0 0 0 0 0 0 0 186 0 0 0.272 9 0.59
5 6 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 186 0 0 0.000 0 1.00
6 7 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 186 0 0 0.000 0 1.00
7 8 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 186 0 0 0.000 0 1.00
8 9 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 186 0 0 0.000 0 1.00
9 10 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 186 0 0 0.000 0 1.00
10 11 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 186 0 0 0.000 0 1.00
11 12 B 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
12 13 B 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 99 0 1 186 0 0 0.067 2 0.88
13 14 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 186 0 0 0.000 0 1.00
14 15 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 186 0 0 0.000 0 1.00
15 16 B 1 0 0 0 0 0 0 0 99 0 0 1 0 0 0 0 0 0 0 0 186 0 0 0.067 2 0.95
16 17 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 98 2 0 0 186 0 0 0.116 3 0.84
17 18 B 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
18 19 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 99 0 0 0 0 186 0 0 0.033 1 0.98
19 20 B 2 0 0 0 0 0 0 0 96 0 0 2 0 0 0 0 0 0 0 0 186 0 0 0.186 6 0.83
20 21 B 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
21 22 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 186 0 0 0.000 0 1.00
22 23 B 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
23 24 B 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
24 25 B 0 99 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 186 0 0 0.033 1 0.83
25 26 B 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
26 27 B 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
27 28 B 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
28 29 B 0 0 0 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 1 0 186 0 0 0.033 1 0.97
29 30 B 0 0 0 0 0 0 0 0 99 0 0 1 0 0 0 0 0 0 0 0 186 0 0 0.033 1 0.98
30 31 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 186 0 0 0.000 0 1.00
31 32 B 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 186 0 0 0.000 0 1.00
32 33 B 99 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 186 0 0 0.067 2 0.75
33 34 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 186 0 0 0.000 0 1.00
34 35 B 0 0 0 0 0 0 0 0 0 0 0 0 1 0 99 0 0 0 0 0 185 0 0 0.034 1 0.93
35 36 B 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 185 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
//