Complet list of 1q68 hssp file
Complete list of 1q68.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1Q68
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-07
HEADER MEMBRANE PROTEIN/TRANSFERASE 12-AUG-03 1Q68
COMPND MOL_ID: 1; MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD4; CHAIN: A; FRAGME
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR P.W.KIM,Z.Y.SUN,S.C.BLACKLOW,G.WAGNER,M.J.ECK
DBREF 1Q68 A 396 433 UNP P01730 CD4_HUMAN 421 458
DBREF 1Q68 B 7 35 UNP P06239 LCK_HUMAN 6 34
SEQLENGTH 67
NCHAIN 2 chain(s) in 1Q68 data set
NALIGN 149
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B0AZV7_HUMAN 0.97 1.00 1 38 242 279 38 0 0 279 B0AZV7 cDNA, FLJ79547, highly similar to T-cell surface glycoprotein CD4 OS=Homo sapiens PE=2 SV=1
2 : B1NC12_PAPAN 0.97 1.00 1 34 237 270 34 0 0 270 B1NC12 CD4 (Fragment) OS=Papio anubis PE=2 SV=1
3 : B4DT49_HUMAN 0.97 1.00 1 38 148 185 38 0 0 185 B4DT49 cDNA FLJ50658, highly similar to T-cell surface glycoprotein CD4 OS=Homo sapiens PE=2 SV=1
4 : B4DZS7_HUMAN 0.97 1.00 40 68 51 79 29 0 0 536 B4DZS7 cDNA FLJ56184, highly similar to Proto-oncogene tyrosine-protein kinase LCK (EC 2.7.10.2) OS=Homo sapiens PE=2 SV=1
5 : B4E1T0_HUMAN 0.97 1.00 1 38 148 185 38 0 0 185 B4E1T0 cDNA FLJ52390, highly similar to T-cell surface glycoprotein CD4 OS=Homo sapiens PE=2 SV=1
6 : B9W0B6_AOTNA 0.97 1.00 1 38 420 457 38 0 0 457 B9W0B6 CD4 antigen OS=Aotus nancymaae GN=CD4 PE=2 SV=1
7 : CD4_HUMAN 0.97 1.00 1 38 421 458 38 0 0 458 P01730 T-cell surface glycoprotein CD4 OS=Homo sapiens GN=CD4 PE=1 SV=1
8 : CD4_MACFA 0.97 1.00 1 38 421 458 38 0 0 458 P79185 T-cell surface glycoprotein CD4 OS=Macaca fascicularis GN=CD4 PE=2 SV=1
9 : CD4_MACFU 0.97 1.00 1 38 421 458 38 0 0 458 P79184 T-cell surface glycoprotein CD4 OS=Macaca fuscata fuscata GN=CD4 PE=2 SV=1
10 : CD4_MACMU 0.97 1.00 1 38 421 458 38 0 0 458 P16003 T-cell surface glycoprotein CD4 OS=Macaca mulatta GN=CD4 PE=2 SV=2
11 : CD4_SAISC 0.97 1.00 1 38 420 457 38 0 0 457 Q29037 T-cell surface glycoprotein CD4 OS=Saimiri sciureus GN=CD4 PE=2 SV=1
12 : E9PAP0_HUMAN 0.97 1.00 40 68 51 79 29 0 0 285 E9PAP0 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
13 : E9PI33_HUMAN 0.97 1.00 40 68 51 79 29 0 0 168 E9PI33 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
14 : E9PJ92_HUMAN 0.97 1.00 40 68 7 35 29 0 0 319 E9PJ92 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
15 : E9PKQ8_HUMAN 0.97 1.00 40 68 7 35 29 0 0 200 E9PKQ8 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
16 : E9PQ10_HUMAN 0.97 1.00 40 68 7 35 29 0 0 149 E9PQ10 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
17 : F6XGD3_MACMU 0.97 1.00 1 38 421 458 38 0 0 458 F6XGD3 T-cell surface glycoprotein CD4 OS=Macaca mulatta GN=CD4 PE=4 SV=1
18 : F7I777_CALJA 0.97 1.00 1 38 148 185 38 0 0 185 F7I777 Uncharacterized protein OS=Callithrix jacchus GN=CD4 PE=4 SV=1
19 : F7ILX9_CALJA 0.97 1.00 1 38 353 390 38 0 0 390 F7ILX9 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=CD4 PE=4 SV=1
20 : F8W6B9_HUMAN 0.97 1.00 40 68 7 35 29 0 0 137 F8W6B9 Tyrosine-protein kinase Lck (Fragment) OS=Homo sapiens GN=LCK PE=2 SV=1
21 : G1QXL1_NOMLE 0.97 1.00 1 38 421 458 38 0 0 458 G1QXL1 Uncharacterized protein OS=Nomascus leucogenys GN=CD4 PE=4 SV=1
22 : G3QJD4_GORGO 0.97 1.00 40 68 7 35 29 0 0 539 G3QJD4 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101151112 PE=4 SV=1
23 : G3QL31_GORGO 0.97 1.00 1 38 421 458 38 0 0 458 G3QL31 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101130322 PE=4 SV=1
24 : G7MI89_MACMU 0.97 1.00 40 68 7 35 29 0 0 509 G7MI89 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_00506 PE=4 SV=1
25 : G7N5T8_MACMU 0.97 1.00 1 38 421 458 38 0 0 458 G7N5T8 T-cell surface antigen T4/Leu-3 OS=Macaca mulatta GN=EGK_03289 PE=4 SV=1
26 : G7PJN3_MACFA 0.97 1.00 1 38 421 458 38 0 0 458 G7PJN3 T-cell surface antigen T4/Leu-3 OS=Macaca fascicularis GN=EGM_02915 PE=4 SV=1
27 : H2NG98_PONAB 0.97 1.00 1 38 377 414 38 0 0 414 H2NG98 Uncharacterized protein OS=Pongo abelii GN=CD4 PE=4 SV=1
28 : H9G1S6_MACMU 0.97 1.00 1 38 421 458 38 0 0 458 H9G1S6 T-cell surface glycoprotein CD4 isoform 1 OS=Macaca mulatta GN=CD4 PE=2 SV=1
29 : H9Z8V0_MACMU 0.97 1.00 40 68 7 35 29 0 0 509 H9Z8V0 Tyrosine-protein kinase Lck OS=Macaca mulatta GN=LCK PE=2 SV=1
30 : LCK_HUMAN 0.97 1.00 40 68 7 35 29 0 0 509 P06239 Tyrosine-protein kinase Lck OS=Homo sapiens GN=LCK PE=1 SV=6
31 : Q4R6X1_MACFA 0.97 1.00 1 38 148 185 38 0 0 185 Q4R6X1 Testis cDNA, clone: QtsA-16956, similar to human CD4 antigen (p55) (CD4), OS=Macaca fascicularis PE=2 SV=1
32 : Q573B4_HUMAN 0.97 1.00 40 68 7 35 29 0 0 516 Q573B4 Proto-oncogene tyrosine-protein kinase LCK OS=Homo sapiens GN=LCK PE=2 SV=1
33 : Q8HZT7_SAISC 0.97 1.00 1 38 420 457 38 0 0 457 Q8HZT7 Lymphocyte antigen CD4 OS=Saimiri sciureus PE=2 SV=1
34 : Q8HZT8_CALJA 0.97 1.00 1 38 420 457 38 0 0 457 Q8HZT8 Lymphocyte antigen CD4 OS=Callithrix jacchus PE=2 SV=1
35 : Q95M32_9PRIM 0.97 1.00 40 68 7 35 29 0 0 509 Q95M32 Lck protein OS=Hylobates sp. GN=lck PE=2 SV=1
36 : B0LAF4_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAF4 T-cell surface glycoprotein CD4 OS=Pan troglodytes verus GN=CD4 PE=2 SV=1
37 : B0LAH5_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAH5 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
38 : B0LAH6_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAH6 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
39 : B0LAI0_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAI0 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
40 : B0LAI3_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAI3 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
41 : B0LAI4_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 B0LAI4 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
42 : CD4_CHLAE 0.95 1.00 1 38 421 458 38 0 0 458 Q08338 T-cell surface glycoprotein CD4 OS=Chlorocebus aethiops GN=CD4 PE=2 SV=3
43 : CD4_MACNE 0.95 1.00 1 38 421 458 38 0 0 458 Q08340 T-cell surface glycoprotein CD4 OS=Macaca nemestrina GN=CD4 PE=2 SV=2
44 : CD4_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 P16004 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=2 SV=1
45 : I6LJ07_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 I6LJ07 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
46 : I6LJ08_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 I6LJ08 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
47 : K7AM69_PANTR 0.95 1.00 1 38 421 458 38 0 0 458 K7AM69 CD4 molecule OS=Pan troglodytes GN=CD4 PE=2 SV=1
48 : I3MIH9_SPETR 0.93 1.00 40 68 7 35 29 0 0 509 I3MIH9 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=LCK PE=4 SV=1
49 : LCK_AOTNA 0.93 1.00 40 68 7 35 29 0 0 509 Q5PXS1 Tyrosine-protein kinase Lck OS=Aotus nancymaae GN=LCK PE=2 SV=4
50 : M3ZC45_NOMLE 0.93 1.00 40 68 7 35 29 0 0 93 M3ZC45 Uncharacterized protein OS=Nomascus leucogenys PE=4 SV=1
51 : G5DGD5_TUPBE 0.92 1.00 1 36 417 452 36 0 0 454 G5DGD5 CD4 antigen OS=Tupaia belangeri PE=2 SV=1
52 : G1M645_AILME 0.91 1.00 1 34 376 409 34 0 0 412 G1M645 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=CD4 PE=4 SV=1
53 : H0XBR4_OTOGA 0.91 0.94 3 34 340 371 32 0 0 375 H0XBR4 Uncharacterized protein (Fragment) OS=Otolemur garnettii GN=CD4 PE=4 SV=1
54 : B7U173_SHEEP 0.90 0.97 40 68 7 35 29 0 0 509 B7U173 Lymphocyte-specific protein tyrosine kinase OS=Ovis aries GN=LCK PE=2 SV=1
55 : E2R589_CANFA 0.90 1.00 40 68 7 35 29 0 0 539 E2R589 Uncharacterized protein OS=Canis familiaris GN=LCK PE=4 SV=2
56 : F1SV94_PIG 0.90 1.00 40 68 7 35 29 0 0 509 F1SV94 Uncharacterized protein OS=Sus scrofa GN=LCK PE=4 SV=2
57 : F6USJ9_HORSE 0.90 1.00 40 68 7 35 29 0 0 510 F6USJ9 Uncharacterized protein OS=Equus caballus GN=LCK PE=4 SV=1
58 : G1LMC0_AILME 0.90 1.00 40 68 50 78 29 0 0 537 G1LMC0 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LCK PE=4 SV=1
59 : G1LMD8_AILME 0.90 1.00 40 68 7 35 29 0 0 539 G1LMD8 Uncharacterized protein OS=Ailuropoda melanoleuca GN=LCK PE=4 SV=1
60 : G1P745_MYOLU 0.90 1.00 40 68 7 35 29 0 0 510 G1P745 Uncharacterized protein OS=Myotis lucifugus GN=LCK PE=4 SV=1
61 : G5BU89_HETGA 0.90 1.00 40 68 7 35 29 0 0 509 G5BU89 Proto-oncogene tyrosine-protein kinase LCK OS=Heterocephalus glaber GN=GW7_09311 PE=4 SV=1
62 : J9P4H4_CANFA 0.90 1.00 40 68 7 35 29 0 0 509 J9P4H4 Uncharacterized protein OS=Canis familiaris GN=LCK PE=4 SV=1
63 : LCK_SAISC 0.90 0.97 40 68 7 35 29 0 0 509 Q95KR7 Proto-oncogene tyrosine-protein kinase LCK OS=Saimiri sciureus GN=LCK PE=1 SV=3
64 : M3WH17_FELCA 0.90 1.00 40 68 7 35 29 0 0 509 M3WH17 Uncharacterized protein OS=Felis catus GN=LCK PE=4 SV=1
65 : Q3ZCM0_BOVIN 0.90 0.97 40 68 7 35 29 0 0 509 Q3ZCM0 Lymphocyte-specific protein tyrosine kinase OS=Bos taurus GN=LCK PE=2 SV=1
66 : S7NDD9_MYOBR 0.90 1.00 40 68 33 61 29 0 0 535 S7NDD9 Tyrosine-protein kinase Lck OS=Myotis brandtii GN=D623_10012386 PE=4 SV=1
67 : W5QII1_SHEEP 0.90 0.97 40 68 45 73 29 0 0 533 W5QII1 Uncharacterized protein (Fragment) OS=Ovis aries GN=LCK PE=4 SV=1
68 : W5QII2_SHEEP 0.90 0.97 40 68 7 35 29 0 0 559 W5QII2 Uncharacterized protein OS=Ovis aries GN=LCK PE=4 SV=1
69 : B2KG65_MOUSE 0.89 1.00 40 66 7 33 27 0 0 92 B2KG65 Proto-oncogene tyrosine-protein kinase LCK (Fragment) OS=Mus musculus GN=Lck PE=2 SV=1
70 : E9Q696_MOUSE 0.89 1.00 40 66 18 44 27 0 0 520 E9Q696 Proto-oncogene tyrosine-protein kinase LCK OS=Mus musculus GN=Lck PE=2 SV=1
71 : LCK_MOUSE 0.89 1.00 40 66 7 33 27 0 0 509 P06240 Proto-oncogene tyrosine-protein kinase LCK OS=Mus musculus GN=Lck PE=1 SV=4
72 : B5LV43_CAPHI 0.88 1.00 1 34 418 451 34 0 0 455 B5LV43 CD4 OS=Capra hircus GN=CD4 PE=4 SV=1
73 : I3MTU1_SPETR 0.88 1.00 1 34 419 452 34 0 0 456 I3MTU1 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=CD4 PE=4 SV=1
74 : I3NES8_SPETR 0.88 1.00 1 34 414 447 34 0 0 451 I3NES8 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=CD4 PE=4 SV=1
75 : Q19VJ6_SHEEP 0.88 1.00 1 34 418 451 34 0 0 455 Q19VJ6 CD4 antigen OS=Ovis aries GN=CD4 PE=2 SV=1
76 : V9NCY8_MARMO 0.88 1.00 1 34 416 449 34 0 0 453 V9NCY8 T-cell surface glycoprotein CD4 (Precursor) OS=Marmota monax PE=2 SV=1
77 : B8XSK4_PIG 0.86 1.00 40 68 7 35 29 0 0 509 B8XSK4 Lymphocyte-specific protein tyrosine kinase OS=Sus scrofa GN=LCK PE=2 SV=1
78 : G1SK64_RABIT 0.86 1.00 40 68 7 35 29 0 0 510 G1SK64 Uncharacterized protein OS=Oryctolagus cuniculus GN=LCK PE=4 SV=1
79 : G3T7L2_LOXAF 0.86 1.00 40 67 7 34 28 0 0 539 G3T7L2 Uncharacterized protein OS=Loxodonta africana GN=LCK PE=4 SV=1
80 : H0WSN1_OTOGA 0.86 1.00 40 68 7 35 29 0 0 509 H0WSN1 Uncharacterized protein OS=Otolemur garnettii GN=LCK PE=4 SV=1
81 : L5JRQ5_PTEAL 0.86 1.00 40 67 7 34 28 0 0 509 L5JRQ5 Proto-oncogene tyrosine-protein kinase LCK OS=Pteropus alecto GN=PAL_GLEAN10015012 PE=4 SV=1
82 : L5KFG2_PTEAL 0.86 1.00 1 29 347 375 29 0 0 375 L5KFG2 T-cell surface glycoprotein CD4 OS=Pteropus alecto GN=PAL_GLEAN10015563 PE=4 SV=1
83 : L9JDG6_TUPCH 0.86 0.97 40 68 7 35 29 0 0 444 L9JDG6 Tyrosine-protein kinase Lck OS=Tupaia chinensis GN=TREES_T100020918 PE=4 SV=1
84 : LCK_RAT 0.86 1.00 40 68 7 35 29 0 0 509 Q01621 Proto-oncogene tyrosine-protein kinase LCK OS=Rattus norvegicus GN=Lck PE=2 SV=3
85 : Q3LG90_ROUAE 0.86 0.97 1 34 435 469 35 1 1 472 Q3LG90 CD4 antigen OS=Rousettus aegyptiacus GN=CD4 PE=2 SV=1
86 : S9YJ22_9CETA 0.86 0.97 40 68 7 35 29 0 0 509 S9YJ22 Tyrosine-protein kinase Lck isoform 2 OS=Camelus ferus GN=CB1_000256026 PE=4 SV=1
87 : V5IZL0_MESAU 0.86 0.97 40 68 7 35 29 0 0 509 V5IZL0 Lymphocyte-specific tyrosine kinase OS=Mesocricetus auratus GN=LCK PE=2 SV=1
88 : A6MAP0_MONDO 0.84 0.94 1 31 431 461 31 0 0 461 A6MAP0 CD4 OS=Monodelphis domestica PE=2 SV=1
89 : A6MUU7_MACEU 0.84 0.94 1 31 434 464 31 0 0 464 A6MUU7 CD4 OS=Macropus eugenii PE=2 SV=1
90 : F6Y6X8_HORSE 0.84 0.95 1 38 424 461 38 0 0 461 F6Y6X8 Uncharacterized protein OS=Equus caballus GN=CD4 PE=4 SV=1
91 : F7AB77_MONDO 0.84 0.94 1 31 339 369 31 0 0 369 F7AB77 Uncharacterized protein OS=Monodelphis domestica GN=CD4 PE=4 SV=2
92 : L5M931_MYODS 0.84 0.95 1 38 423 460 38 0 0 460 L5M931 T-cell surface glycoprotein CD4 OS=Myotis davidii GN=MDA_GLEAN10016036 PE=4 SV=1
93 : I0J0J9_BOVIN 0.83 0.97 1 36 418 453 36 0 0 455 I0J0J9 T-cell surface glycoprotein CD4 OS=Bos taurus GN=CD4 PE=2 SV=1
94 : I0J0K0_BOVIN 0.83 0.97 1 36 418 453 36 0 0 455 I0J0K0 T-cell surface glycoprotein CD4 OS=Bos taurus GN=CD4 PE=2 SV=1
95 : I0J0K1_BOVIN 0.83 0.97 1 36 418 453 36 0 0 455 I0J0K1 T-cell surface glycoprotein CD4 OS=Bos taurus GN=CD4 PE=2 SV=1
96 : M3YUZ1_MUSPF 0.83 1.00 40 68 7 35 29 0 0 509 M3YUZ1 Uncharacterized protein OS=Mustela putorius furo GN=LCK PE=4 SV=1
97 : U6DAS6_NEOVI 0.83 1.00 40 68 7 35 29 0 0 423 U6DAS6 Tyrosine-protein kinase Lck (Fragment) OS=Neovison vison GN=LCK PE=2 SV=1
98 : CD4_CANFA 0.82 0.97 1 38 426 463 38 0 0 463 P33705 T-cell surface glycoprotein CD4 OS=Canis familiaris GN=CD4 PE=2 SV=1
99 : CD4_DELLE 0.81 0.97 1 36 418 453 36 0 0 455 Q9XS78 T-cell surface glycoprotein CD4 OS=Delphinapterus leucas GN=CD4 PE=2 SV=1
100 : F1MJK4_BOVIN 0.81 0.94 1 32 418 449 32 0 0 455 F1MJK4 Uncharacterized protein OS=Bos taurus GN=CD4 PE=4 SV=2
101 : G3WTA4_SARHA 0.81 0.94 1 31 455 485 31 0 0 485 G3WTA4 Uncharacterized protein OS=Sarcophilus harrisii GN=CD4 PE=4 SV=1
102 : F1SLT4_PIG 0.80 0.90 7 36 386 415 30 0 0 417 F1SLT4 Uncharacterized protein OS=Sus scrofa GN=CD4 PE=4 SV=1
103 : G3W363_SARHA 0.80 0.96 43 67 10 34 25 0 0 509 G3W363 Uncharacterized protein OS=Sarcophilus harrisii GN=LCK PE=4 SV=1
104 : H0VAT0_CAVPO 0.79 0.93 40 68 7 35 29 0 0 509 H0VAT0 Uncharacterized protein OS=Cavia porcellus GN=LCK PE=4 SV=1
105 : I6LI22_MUSPF 0.79 0.95 1 38 425 462 38 0 0 462 I6LI22 CD4 OS=Mustela putorius furo PE=2 SV=1
106 : M3W1W4_FELCA 0.79 0.97 1 38 437 474 38 0 0 474 M3W1W4 Uncharacterized protein OS=Felis catus GN=CD4 PE=4 SV=1
107 : P79355_FELCA 0.79 0.97 1 38 437 474 38 0 0 474 P79355 CD4 antigen (Precursor) OS=Felis catus PE=2 SV=1
108 : U6CUW6_NEOVI 0.79 0.95 1 38 408 445 38 0 0 445 U6CUW6 T-cell surface glycoprotein CD4 OS=Neovison vison GN=CD4 PE=2 SV=1
109 : F1SLT5_PIG 0.78 0.92 1 36 420 455 36 0 0 457 F1SLT5 Uncharacterized protein OS=Sus scrofa GN=CD4 PE=4 SV=1
110 : G3GUN9_CRIGR 0.78 0.91 1 32 419 447 32 1 3 447 G3GUN9 T-cell surface glycoprotein CD4 OS=Cricetulus griseus GN=I79_001406 PE=4 SV=1
111 : M1EGU6_MUSPF 0.78 0.94 1 36 425 459 36 1 1 460 M1EGU6 CD4 molecule (Fragment) OS=Mustela putorius furo PE=2 SV=1
112 : M4QL92_PIG 0.78 0.92 1 36 420 455 36 0 0 457 M4QL92 T-cell surface glycoprotein CD4 variant OS=Sus scrofa GN=CD4 PE=2 SV=1
113 : Q6R3N4_PIG 0.78 0.92 1 36 420 455 36 0 0 457 Q6R3N4 Lymphocyte antigen CD4 (Precursor) OS=Sus scrofa GN=CD4 PE=2 SV=2
114 : S7N841_MYOBR 0.78 0.88 1 32 426 454 32 1 3 454 S7N841 T-cell surface glycoprotein CD4 OS=Myotis brandtii GN=D623_10009384 PE=4 SV=1
115 : CD4_MOUSE 0.76 0.89 1 38 420 457 38 0 0 457 P06332 T-cell surface glycoprotein CD4 OS=Mus musculus GN=Cd4 PE=1 SV=1
116 : F6Z574_MONDO 0.76 0.96 43 67 10 34 25 0 0 509 F6Z574 Uncharacterized protein OS=Monodelphis domestica GN=LCK PE=4 SV=2
117 : H2RB07_PANTR 0.76 0.89 1 38 421 458 38 0 0 458 H2RB07 T-cell surface glycoprotein CD4 OS=Pan troglodytes GN=CD4 PE=4 SV=1
118 : O55054_MOUSE 0.76 0.89 1 38 396 433 38 0 0 433 O55054 T4 surface glycoprotein (Fragment) OS=Mus musculus GN=Cd4 PE=2 SV=1
119 : Q3TSV7_MOUSE 0.76 0.89 1 38 420 457 38 0 0 457 Q3TSV7 CD4 antigen, isoform CRA_a OS=Mus musculus GN=Cd4 PE=2 SV=1
120 : Q61396_MOUSE 0.76 0.89 1 38 420 457 38 0 0 457 Q61396 T-cell differentiation antigen OS=Mus musculus GN=CD4 PE=4 SV=1
121 : Q6R3N3_PIG 0.76 0.88 4 36 384 415 33 1 1 417 Q6R3N3 Lymphocyte antigen CD4 (Precursor) OS=Sus scrofa GN=CD4 PE=2 SV=2
122 : L8HVB0_9CETA 0.75 0.88 1 32 418 446 32 1 3 446 L8HVB0 T-cell surface glycoprotein CD4 OS=Bos mutus GN=M91_17644 PE=4 SV=1
123 : L8Y3X9_TUPCH 0.75 0.84 1 32 431 459 32 1 3 459 L8Y3X9 T-cell surface glycoprotein CD4 OS=Tupaia chinensis GN=TREES_T100008260 PE=4 SV=1
124 : Q71QE2_TURTR 0.75 0.94 1 36 418 453 36 0 0 455 Q71QE2 T-cell surface glycoprotein CD4 OS=Tursiops truncatus PE=2 SV=1
125 : CD4_RABIT 0.74 0.95 1 38 422 459 38 0 0 459 P46630 T-cell surface glycoprotein CD4 OS=Oryctolagus cuniculus GN=CD4 PE=2 SV=1
126 : CD4_RAT 0.74 0.89 1 38 420 457 38 0 0 457 P05540 T-cell surface glycoprotein CD4 OS=Rattus norvegicus GN=Cd4 PE=1 SV=1
127 : G1T4B9_RABIT 0.74 0.95 1 38 422 459 38 0 0 459 G1T4B9 T-cell surface glycoprotein CD4 OS=Oryctolagus cuniculus GN=CD4 PE=4 SV=1
128 : H0VL66_CAVPO 0.74 0.89 1 38 423 460 38 0 0 460 H0VL66 Uncharacterized protein OS=Cavia porcellus GN=CD4 PE=4 SV=1
129 : G3U7C0_LOXAF 0.71 0.82 2 38 414 450 38 2 2 450 G3U7C0 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
130 : G3ULS8_LOXAF 0.68 0.81 1 36 434 470 37 1 1 471 G3ULS8 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
131 : G3UCG3_LOXAF 0.67 0.79 1 38 417 455 39 1 1 455 G3UCG3 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
132 : G3TWZ4_LOXAF 0.66 0.82 3 38 420 457 38 2 2 457 G3TWZ4 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
133 : W5P8J5_SHEEP 0.65 0.79 1 34 418 451 34 0 0 455 W5P8J5 T-cell surface glycoprotein CD4 OS=Ovis aries GN=CD4 PE=4 SV=1
134 : G3TZC2_LOXAF 0.59 0.75 3 34 429 457 32 1 3 457 G3TZC2 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
135 : G3UBY8_LOXAF 0.59 0.75 3 34 417 445 32 1 3 445 G3UBY8 Uncharacterized protein OS=Loxodonta africana GN=CD4 PE=4 SV=1
136 : A7WPR9_MELGA 0.50 0.75 3 33 456 487 32 1 1 487 A7WPR9 CD4 protein OS=Meleagris gallopavo GN=CD4 PE=2 SV=1
137 : F1NGI9_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 F1NGI9 Uncharacterized protein OS=Gallus gallus GN=CD4 PE=4 SV=1
138 : G1NMU4_MELGA 0.50 0.75 3 33 457 488 32 1 1 488 G1NMU4 Uncharacterized protein OS=Meleagris gallopavo GN=CD4 PE=4 SV=2
139 : Q3HR38_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 Q3HR38 CD4 OS=Gallus gallus PE=2 SV=1
140 : Q6Q4G0_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 Q6Q4G0 CD4 (Precursor) OS=Gallus gallus GN=CD4 PE=2 SV=1
141 : Q6Q4G1_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 Q6Q4G1 CD4 (Precursor) OS=Gallus gallus GN=CD4 PE=2 SV=1
142 : Q6Q4G2_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 Q6Q4G2 CD4 (Precursor) OS=Gallus gallus GN=CD4 PE=2 SV=1
143 : Q9W6V7_CHICK 0.50 0.75 3 33 456 487 32 1 1 487 Q9W6V7 CD4 (Precursor) OS=Gallus gallus GN=CD4 PE=2 SV=1
144 : B8YEL2_ANAPL 0.47 0.78 3 33 451 482 32 1 1 482 B8YEL2 T-cell surface glycoprotein CD4 OS=Anas platyrhynchos PE=2 SV=1
145 : B8YEL3_ANAPL 0.47 0.78 3 33 451 482 32 1 1 482 B8YEL3 T-cell surface glycoprotein CD4 OS=Anas platyrhynchos PE=2 SV=1
146 : J7F838_9AVES 0.47 0.78 3 33 449 480 32 1 1 480 J7F838 CD4 OS=Anser anser PE=2 SV=1
147 : L0EJ76_ANSCY 0.47 0.78 3 33 449 480 32 1 1 480 L0EJ76 T-cell surface glycoprotein CD4 OS=Anser cygnoides PE=2 SV=1
148 : U3I4I6_ANAPL 0.47 0.78 3 33 451 482 32 1 1 482 U3I4I6 Uncharacterized protein OS=Anas platyrhynchos GN=CD4 PE=4 SV=1
149 : U3JQ50_FICAL 0.47 0.81 3 33 456 487 32 1 1 487 U3JQ50 Uncharacterized protein OS=Ficedula albicollis GN=CD4 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 396 A R 0 0 292 81 29 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR KK
2 397 A C + 0 0 98 82 26 CCC CCCCCCC CCC C C CCCC C CC CCCCCCCCCCCC CC
3 398 A R + 0 0 240 100 13 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RWR
4 399 A H S S+ 0 0 189 101 37 HHH HHHHHHH HHH H H HHHH H HH HHHHHHHHHHHH HHH
5 400 A R - 0 0 192 101 10 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RRR
6 401 A R + 0 0 210 98 28 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RRR
7 402 A R + 0 0 218 102 46 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RRR
8 403 A Q S S- 0 0 147 102 52 QQQ QQQQQQQ QQQ Q Q QQQQ Q QQ QQQQQQQQQQQQ QQQ
9 404 A A - 0 0 18 102 16 AAA AAAAAAA AAA A A AAAA A AA AAAAAAAAAAAA AAT
10 405 A E S > S+ 0 0 144 102 70 EEE EEEEEEE EEE E E EEEE E EE QQQQQQQEQQQQ EEE
11 406 A R H > S+ 0 0 126 101 11 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RRR
12 407 A L H > S+ 0 0 55 102 14 MMM IMMMMMM MMM M M MMMM M MM MMMMMMMMMMMM MMK
13 408 A S H > S+ 0 0 71 102 36 SSS SSSSSSS SSS S S SSSS S SS SSSSSSSSSSSS SSS
14 409 A Q H X S+ 0 0 161 102 17 QQQ QQQQQQQ QQQ Q Q QQQQ Q QQ QQQQQQQQQQQQ QQQ
15 410 A I H X S+ 0 0 8 102 49 III IIIIIII III I I IIII I II IIIIIIIIIIII III
16 411 A K H X S+ 0 0 128 102 12 KKK KKKKKKK KKK K K KKKK K KK KKKKKKKKKKKK KKK
17 412 A R H X S+ 0 0 204 102 35 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRRRRRR RRR
18 413 A L H <>S+ 0 0 32 102 43 LLL LLLLLLL LLL L L LLLL L LL LLLLLLLLLLLL LLL
19 414 A L H ><5S+ 0 0 72 102 0 LLL LLLLLLL LLL L L LLLL L LL LLLLLLLLLLLL LLL
20 415 A S H 3<5S+ 0 0 95 102 60 SSS SSSSSSS SSS S S SSSS S SS SSSSSSSSSSSS SSS
21 416 A E T 3<5S- 0 0 123 102 3 EEE EEEEEEE EEE E E EEEE E EE EEEEEEEEEEEE EEE
22 417 A K T < 5 + 0 0 150 102 5 KKK KKKKKKK KKK K K KKKK K KK KKKKKKKKKKKK KKK
23 418 A K < + 0 0 85 102 2 KKK KKKKKKK KKK K K KKKK K KK KKKKKKKKKKKK KKK
24 419 A T S S- 0 0 31 102 5 TTT TTTTTTT TTT T T TTTT T TT TTTTTTTTTTTT TTT
25 420 A C + 0 0 28 102 0 CCC CCCCCCC CCC C C CCCC C CC CCCCCCCCCCCC CCC
26 421 A Q + 0 0 149 102 4 QQQ QQQQQQQ QQQ Q Q QQQQ Q QQ QQQQQQQQQQQQ QQQ
27 422 A C - 0 0 38 102 0 CCC CCCCCCC CCC C C CCCC C CC CCCCCCCCCCCC CCC
28 423 A P - 0 0 89 102 56 PPP PPPPPPP PPP P P PPPP P PP PPPPPPPPPPPP SPV
29 424 A H - 0 0 116 96 29 HHH HHHHHHH HHH H H HHHH H HH HHHHHHHHHHHH HHH
30 425 A R S S- 0 0 200 95 3 RRR RRRRRRR RRR R R RRRR R RR RRRRRRRWRRRR RRR
31 426 A F - 0 0 198 95 43 FFF FFFFFFF FFF F F FFFF F FF FFFFFFFFFFFF FFF
32 427 A Q - 0 0 112 97 61 QQQ QQQQQQQ QQQ Q Q QQQQ Q QQ QQQQQQQQQQQQ QQQ
33 428 A K - 0 0 171 92 2 KKK KKKKKKK KKK K K KKKK K KK KKKKKKKKKKKK KKK
34 429 A T S S+ 0 0 105 78 39 TTT TTTTTTT TTT T T TTTT T TT TTTTTTTTTTTT TTT
35 430 A C + 0 0 106 66 35 C C CCCCCCC CCC C C CCCC C CC CCCCCCCCCCCC C
36 431 A S S S- 0 0 64 66 35 S S SSSSSSS SSS S S SSSS S SS SSSSSSSSSSSS S
37 432 A P 0 0 134 53 78 P P PPPPPPP PPP P P PPPP P PP PPPPPPPPPPPP
38 433 A I 0 0 175 53 10 I I IIIIIII III I I IIII I II IIIIIIIIIIII
39 ! ! 0 0 0 0 0
40 7 B S 0 0 170 47 0 S SSSSS S S S SS S S SSS SSSSSSSSSSSSSSSSS
41 8 B H - 0 0 149 47 42 H HHHHH H H H HH H H NHH NNNNNNNNNHNNNNNNN
42 9 B P - 0 0 102 47 20 P PPPPP P P P PP P P PPS PPPPPPPPPLPPPPPPP
43 10 B E S S+ 0 0 126 49 3 E EEEEE E E E EE E E EEE EEEEEEEEEEEEEEEEE
44 11 B D S > S+ 0 0 108 49 10 D DDDDD D D D DD D D DDD DDDDDDDDDDDDDDDDD
45 12 B D H > S+ 0 0 94 49 0 D DDDDD D D D DD D D DDD DDDDDDDDDDDDDDDDD
46 13 B W H 4 S+ 0 0 88 49 0 W WWWWW W W W WW W W WWW WWWWWWWWWWWWWWWWW
47 14 B L H >4 S+ 0 0 36 49 0 M MMMMM M M M MM M M MMM MMMMMMMMMMMMMMMMM
48 15 B E H 3< S+ 0 0 82 49 0 E EEEEE E E E EE E E EEE EEEEEEEEEEEEEEEEE
49 16 B N T 3< S+ 0 0 137 49 3 N NNNNN N N N NN N N NNN NNNNNNNNNNNNNNNNN
50 17 B I < - 0 0 12 49 0 I IIIII I I I II I I III IIIIIIIIIIIIIIIII
51 18 B D - 0 0 99 49 0 D DDDDD D D D DD D D DDD DDDDDDDDDDDDDDDDD
52 19 B V - 0 0 69 49 0 V VVVVV V V V VV V V VVV VVVVVVVVVVVVVVVVV
53 20 B C - 0 0 24 49 0 C CCCCC C C C CC C C CCC CCCCCCCCCCCCCCCCC
54 21 B E S S+ 0 0 191 49 3 E EEEEE E E E EE E E EEE EEEEEEEEEEEEEEEEE
55 22 B N S S+ 0 0 128 49 18 N NNNNN N N N NN N N NNN NNNNNNNNNNNNNNNNN
56 23 B C S S- 0 0 47 49 0 C CCCCC C C C CC C C CCC CCCCCCCCCCCCCCCCC
57 24 B H + 0 0 162 49 3 H HHHHH H H H HH H H HHH HHHHHHHHHHHHHHHHH
58 25 B Y S S- 0 0 71 49 2 Y YYYYY Y Y Y YY Y Y YYY YYYYYYYYYYYYYYYYY
59 26 B P - 0 0 3 49 0 P PPPPP P P P PP P P PPP PPPPPPPPPPPPPPPPP
60 27 B I - 0 0 70 49 0 I IIIII I I I II I I III IIIIIIIIIIIIIIIII
61 28 B V - 0 0 64 49 8 V VVVVV V V V VV V V VVV VVVVVVVVVVVVVVVVV
62 29 B P - 0 0 77 49 3 P PPPPP P P P PP P P PPP PPPPPPPPPPPPPPPPP
63 30 B L + 0 0 177 49 0 L LLLLL L L L LL L L LLL LLLLLLLLLLLLLLLLL
64 31 B D - 0 0 128 49 1 D DDDDD D D D DD D D DDD DDDDDDDDDDDDDDDDD
65 32 B G - 0 0 62 49 30 G GGGGG G G G GG G G GGG GGGGGGGGGGGGGGGSS
66 33 B K - 0 0 170 49 0 K KKKKK K K K KK K K KKK KKKKKKKKKKKKKKKKK
67 34 B G 0 0 80 46 51 G GGGGG G G G GG G G GAG TAAAAAAAAAATATT
68 35 B T 0 0 202 42 0 T TTTTT T T T TT T T TTT TTTTTTTTTTTTTTT
## ALIGNMENTS 71 - 140
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 396 A R 0 0 292 81 29 KKKKK K K RRKRKKKK KKKR KKKKKKKKKKR RRRR KKKKRKW RR K
2 397 A C + 0 0 98 82 26 CCCCC C C RRCRCCCC CCCR CCCCCCCCCCC CCCC CCYCCCCCHH C
3 398 A R + 0 0 240 100 13 WRRWR R W RRWRWWWW WWWR WWWWWRWWWWR RRRR WRWRRRRCQQRWRRWWWWW
4 399 A H S S+ 0 0 189 101 37 HHHHH H H HHHHHHHH RHHH HHHHHHHHHHH HHHHEHHHHHHHVRRRHRRQQQQQ
5 400 A R - 0 0 192 101 10 RRRRR R r RRRRRRRR RRRR RRRRRQRRRRQ RQQQRRRRRQRQRRRrRRRrrrrr
6 401 A R + 0 0 210 98 28 RRRRR K r LLRLRRRR RRRL RRRRRR.RRRQ RQQQ.RRRRQRR.RRsRVVrrrrr
7 402 A R + 0 0 218 102 46 RRRRR R R RRRRRRRR RRRRR RRRRRRRRRRR RRRRRRRRHRHRHVVEPSSKKKKK
8 403 A Q S S- 0 0 147 102 52 QQQQQ Q Q RRQRQRRR QRRRR QQQQRQQRRQQ QQQQRRQRQQQQQSSPPEERRRRR
9 404 A A - 0 0 18 102 16 AAAAA A A AAAAAAAA AAAAA AAAAAAAAAAA AAAAAAAAAAAAREEPSPPAAAAA
10 405 A E S > S+ 0 0 144 102 70 EEEEE E E EEEEVEEE EEEEE AAAAEEAEEVA QAAAEEEQQAQARPPQPPPKRKRR
11 406 A R H > S+ 0 0 126 101 11 RRRRR R R RRRRRRRR RRRRR RRRRRRRRRRR RRRRRRRRRRRRRPPXPQQRRRRR
12 407 A L H > S+ 0 0 55 102 14 MMMMM M M MMMMMMMM MTMMM MMMMMMMMMMM MMMMMMMTMMMMMMMMPMMIMIMM
13 408 A S H > S+ 0 0 71 102 36 SSSSS S S SSSSSSSS SSSSS SSSSSSSSSSS SSSSSSSSSSSSSSSSPSSAAAAA
14 409 A Q H X S+ 0 0 161 102 17 QQQQQ Q Q QQQQQQQQ QQQQQ QHHQQQQQQQQ QQQQQQQQQQQQQQQQPQQQQQQQ
15 410 A I H X S+ 0 0 8 102 49 IIIII I I IIIIIIII IIIII IIIIIIIIIII IIIIIIIIIIIIIIIIPIIAAAAA
16 411 A K H X S+ 0 0 128 102 12 KKKKK K K RRKRKKKK KKKRK KKKKKKKKKKK KKKKKKKKKKKKKKKKKKKKKKKK
17 412 A R H X S+ 0 0 204 102 35 RRRRR R R RRRRRRRR RRRRR RRRRRRRRRRR RRRRRRRRKRKRRRRRRRRQQQQQ
18 413 A L H <>S+ 0 0 32 102 43 LLLLL L L LLLLLLLL LLLLL LLLLLLLLLLL KLLLLLLLLLLLLLLLLLLYYYYY
19 414 A L H ><5S+ 0 0 72 102 0 LLLLL L L LLLLLLLL LLLLL LLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLL
20 415 A S H 3<5S+ 0 0 95 102 60 SSSSS S S SSSSSSSS SSSSS SSSSSSSSSSS SSSSSSKSSSSSSSSSSSSLLLLL
21 416 A E T 3<5S- 0 0 123 102 3 EEEEE E E EEEEEEEE EEEEE EEEEEEEEEEE VEEEEEEEEEEEEEEEEEEEEEEE
22 417 A K T < 5 + 0 0 150 102 5 KKKKK K K KKKKKKKK KKKKK KKKKKKKKKKK WKKKKKKKKKKKKKKKKKKKKKKK
23 418 A K < + 0 0 85 102 2 KKKKK K K KKKKKKKK KKKKK KKKKKKKKKKK PKKKKKKKKKKKKKKKKKKKKKKK
24 419 A T S S- 0 0 31 102 5 TTTTT T T TTTTTTTT TTTTT TTTTTTTTTTT STTTTPPTTTTTTTTTTTTTTTTT
25 420 A C + 0 0 28 102 0 CCCCC C C CCCCCCCC CCCCC CCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCC
26 421 A Q + 0 0 149 102 4 QQQQQ Q Q QQQQQQQQ QHQQQ QQQQQQQQQQQ RQQQQQQHQQQQQQQQQQQQQQQQ
27 422 A C - 0 0 38 102 0 CCCCC C C CCCCCCCC CCCCC CCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCC
28 423 A P - 0 0 89 102 56 PSSPS P P PPHPPPPP SSPPA PSSPASPAAPP PPPPAPSSPSPHppppPPPQQQQQ
29 424 A H - 0 0 116 96 29 HHHHH Q H HHHHHHHH HHHHH HHHHH.HHH.H RHHHH..HHHHRnnnnH..RRRRR
30 425 A R S S- 0 0 200 95 3 RRRRR R RRRRRRRR RREHR RRRRR.RRR.R RRRRR..RRRRRRRRRR..RRRRR
31 426 A F - 0 0 198 95 43 LLLLL Y FFFFFLLL ILAFQ LLLLQ.LQQ.M FMMMQ..LLMLLLLLLL..MMMMM
32 427 A Q - 0 0 112 97 61 QQQQQ Q Q QQQQ QQQ Q QQQQQQQQQQQ QQQQQQQQQQQGQQQQQSSYYYYY
33 428 A K - 0 0 171 92 2 KKKKK K K KKKK KK K KKKKK KKK K KKKKK KKKKSKKKKKKKKKKKK
34 429 A T S S+ 0 0 105 78 39 TTTTT T T TTTT TT N ATTAN ANN S TSSSN TTSTTTTTTTKK
35 430 A C + 0 0 106 66 35 V CYYY CC Y CCCCY CYY H CHHHY CYHYCCCCC
36 431 A S S S- 0 0 64 66 35 S NSSS SS S NNNNS NSS N SNNNS SNNNSSSSS
37 432 A P 0 0 134 53 78 P L L LPPL L PLLL LLLPL LL
38 433 A I 0 0 175 53 10 V I I IIII I IIII LILLI II
39 ! ! 0 0 0 0 0
40 7 B S 0 0 170 47 0 S SSSSS SS SS SS S
41 8 B H - 0 0 149 47 42 N NNNNN NN NN NN N
42 9 B P - 0 0 102 47 20 P PPPPP PP PP SS P
43 10 B E S S+ 0 0 126 49 3 E EEEEE EE EE EE EE D
44 11 B D S > S+ 0 0 108 49 10 D DDDDD DD DD EE ED E
45 12 B D H > S+ 0 0 94 49 0 D DDDDD DD DD DD DD D
46 13 B W H 4 S+ 0 0 88 49 0 W WWWWW WW WW WW WW W
47 14 B L H >4 S+ 0 0 36 49 0 M MMMMM MM MM MM MM M
48 15 B E H 3< S+ 0 0 82 49 0 E EEEEE EE EE EE EE E
49 16 B N T 3< S+ 0 0 137 49 3 N NNNSN NN NN NN NN N
50 17 B I < - 0 0 12 49 0 I IIIII II II II II I
51 18 B D - 0 0 99 49 0 D DDDDD DD DD DD DD D
52 19 B V - 0 0 69 49 0 V VVVVV VV VV VV VV V
53 20 B C - 0 0 24 49 0 C CCCCC CC CC CC CC C
54 21 B E S S+ 0 0 191 49 3 E EEEEE GE EE EE EE E
55 22 B N S S+ 0 0 128 49 18 N NNNNN NN NN NN RN R
56 23 B C S S- 0 0 47 49 0 C CCCCC CC CC CC CC C
57 24 B H + 0 0 162 49 3 H RHHHH HH HH HH HH H
58 25 B Y S S- 0 0 71 49 2 Y YYYYY YY YY YY YC Y
59 26 B P - 0 0 3 49 0 P PPPPP PP PP PP PP P
60 27 B I - 0 0 70 49 0 I IIIII II II II II I
61 28 B V - 0 0 64 49 8 V VVVVV VV VV VV VD V
62 29 B P - 0 0 77 49 3 P PPPPS PP PP PP PP P
63 30 B L + 0 0 177 49 0 L LLLLL LL LL LL LL L
64 31 B D - 0 0 128 49 1 D DEDDD DD DD DD DD D
65 32 B G - 0 0 62 49 30 S GGSGG GS VS GG AS A
66 33 B K - 0 0 170 49 0 K KKKKK KK KK KK KK K
67 34 B G 0 0 80 46 51 AAAAA AS AT AA SA D
68 35 B T 0 0 202 42 0 TT T TT TT TT T
## ALIGNMENTS 141 - 149
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....5....:....6....:....7....:....8....:....9....:....0....:....1
1 396 A R 0 0 292 81 29
2 397 A C + 0 0 98 82 26
3 398 A R + 0 0 240 100 13 WWWWWWWWW
4 399 A H S S+ 0 0 189 101 37 QQQQQQQQQ
5 400 A R - 0 0 192 101 10 rrrrrrrrr
6 401 A R + 0 0 210 98 28 rrrrrrrrr
7 402 A R + 0 0 218 102 46 KKKQQQQQQ
8 403 A Q S S- 0 0 147 102 52 RRRRRRRRR
9 404 A A - 0 0 18 102 16 AAAAAAAAA
10 405 A E S > S+ 0 0 144 102 70 RRRKKKKKK
11 406 A R H > S+ 0 0 126 101 11 RRRRRRRRR
12 407 A L H > S+ 0 0 55 102 14 MMMMMMMMM
13 408 A S H > S+ 0 0 71 102 36 AAAAAAAAA
14 409 A Q H X S+ 0 0 161 102 17 QQQRRRRRQ
15 410 A I H X S+ 0 0 8 102 49 AAAAAAAAA
16 411 A K H X S+ 0 0 128 102 12 KKKRRRRRR
17 412 A R H X S+ 0 0 204 102 35 QQQQQQQQQ
18 413 A L H <>S+ 0 0 32 102 43 YYYYYHHYY
19 414 A L H ><5S+ 0 0 72 102 0 LLLLLLLLL
20 415 A S H 3<5S+ 0 0 95 102 60 LLLLLLLLL
21 416 A E T 3<5S- 0 0 123 102 3 EEEEEEEEE
22 417 A K T < 5 + 0 0 150 102 5 KKKKKKKKN
23 418 A K < + 0 0 85 102 2 KKKKKKKKK
24 419 A T S S- 0 0 31 102 5 TTTTTTTTT
25 420 A C + 0 0 28 102 0 CCCCCCCCC
26 421 A Q + 0 0 149 102 4 QQQQQQQQQ
27 422 A C - 0 0 38 102 0 CCCCCCCCC
28 423 A P - 0 0 89 102 56 QQQQQQQQQ
29 424 A H - 0 0 116 96 29 RRRHHHHHH
30 425 A R S S- 0 0 200 95 3 RRRRRRRRR
31 426 A F - 0 0 198 95 43 MMMMMMMML
32 427 A Q - 0 0 112 97 61 YYYNNNNNK
33 428 A K - 0 0 171 92 2 KKKKKKKKK
34 429 A T S S+ 0 0 105 78 39
35 430 A C + 0 0 106 66 35
36 431 A S S S- 0 0 64 66 35
37 432 A P 0 0 134 53 78
38 433 A I 0 0 175 53 10
39 ! ! 0 0 0 0 0
40 7 B S 0 0 170 47 0
41 8 B H - 0 0 149 47 42
42 9 B P - 0 0 102 47 20
43 10 B E S S+ 0 0 126 49 3
44 11 B D S > S+ 0 0 108 49 10
45 12 B D H > S+ 0 0 94 49 0
46 13 B W H 4 S+ 0 0 88 49 0
47 14 B L H >4 S+ 0 0 36 49 0
48 15 B E H 3< S+ 0 0 82 49 0
49 16 B N T 3< S+ 0 0 137 49 3
50 17 B I < - 0 0 12 49 0
51 18 B D - 0 0 99 49 0
52 19 B V - 0 0 69 49 0
53 20 B C - 0 0 24 49 0
54 21 B E S S+ 0 0 191 49 3
55 22 B N S S+ 0 0 128 49 18
56 23 B C S S- 0 0 47 49 0
57 24 B H + 0 0 162 49 3
58 25 B Y S S- 0 0 71 49 2
59 26 B P - 0 0 3 49 0
60 27 B I - 0 0 70 49 0
61 28 B V - 0 0 64 49 8
62 29 B P - 0 0 77 49 3
63 30 B L + 0 0 177 49 0
64 31 B D - 0 0 128 49 1
65 32 B G - 0 0 62 49 30
66 33 B K - 0 0 170 49 0
67 34 B G 0 0 80 46 51
68 35 B T 0 0 202 42 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 396 A 0 0 0 0 0 1 0 0 0 0 0 0 0 0 58 41 0 0 0 0 81 0 0 0.736 24 0.71
2 397 A 0 0 0 0 0 0 1 0 0 0 0 0 91 2 5 0 0 0 0 0 82 0 0 0.373 12 0.74
3 398 A 0 0 0 0 0 38 0 0 0 0 0 0 1 0 59 0 2 0 0 0 100 0 0 0.803 26 0.87
4 399 A 1 0 0 0 0 0 0 0 0 0 0 0 0 78 6 0 14 1 0 0 101 0 0 0.725 24 0.63
5 400 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 7 0 0 0 101 3 16 0.252 8 0.89
6 401 A 2 4 0 0 0 0 0 0 0 0 1 0 0 0 87 1 5 0 0 0 98 0 0 0.579 19 0.71
7 402 A 2 0 0 0 0 0 0 0 0 1 2 0 0 3 77 8 6 1 0 0 102 0 0 0.913 30 0.54
8 403 A 0 0 0 0 0 0 0 0 0 2 2 0 0 0 29 0 65 2 0 0 102 0 0 0.873 29 0.48
9 404 A 0 0 0 0 0 0 0 0 92 3 1 1 0 0 1 0 0 2 0 0 102 0 0 0.392 13 0.84
10 405 A 2 0 0 0 0 0 0 0 11 5 0 0 0 0 7 8 16 52 0 0 102 0 0 1.479 49 0.29
11 406 A 0 0 0 0 0 0 0 0 0 3 0 0 0 0 95 0 2 0 0 0 101 0 0 0.230 7 0.89
12 407 A 0 1 3 92 0 0 0 0 0 1 0 2 0 0 0 1 0 0 0 0 102 0 0 0.392 13 0.86
13 408 A 0 0 0 0 0 0 0 0 14 1 85 0 0 0 0 0 0 0 0 0 102 0 0 0.454 15 0.64
14 409 A 0 0 0 0 0 0 0 0 0 1 0 0 0 2 5 0 92 0 0 0 102 0 0 0.346 11 0.83
15 410 A 0 0 85 0 0 0 0 0 14 1 0 0 0 0 0 0 0 0 0 0 102 0 0 0.454 15 0.50
16 411 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 90 0 0 0 0 102 0 0 0.321 10 0.87
17 412 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 84 2 14 0 0 0 102 0 0 0.494 16 0.64
18 413 A 0 85 0 0 0 0 12 0 0 0 0 0 0 2 0 1 0 0 0 0 102 0 0 0.510 17 0.57
19 414 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 102 0 0 0.000 0 1.00
20 415 A 0 14 0 0 0 0 0 0 0 0 85 0 0 0 0 1 0 0 0 0 102 0 0 0.454 15 0.39
21 416 A 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 102 0 0 0.055 1 0.97
22 417 A 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 98 0 0 1 0 102 0 0 0.110 3 0.95
23 418 A 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 99 0 0 0 0 102 0 0 0.055 1 0.97
24 419 A 0 0 0 0 0 0 0 0 0 2 1 97 0 0 0 0 0 0 0 0 102 0 0 0.151 5 0.95
25 420 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 102 0 0 0.000 0 1.00
26 421 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 97 0 0 0 102 0 0 0.151 5 0.96
27 422 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 102 0 0 0.000 0 1.00
28 423 A 1 0 0 0 0 0 0 0 5 67 12 0 0 2 0 0 14 0 0 0 102 6 4 1.065 35 0.43
29 424 A 0 0 0 0 0 0 0 0 0 0 0 0 0 84 10 0 1 0 4 0 96 0 0 0.559 18 0.71
30 425 A 0 0 0 0 0 1 0 0 0 0 0 0 0 1 97 0 0 1 0 0 95 0 0 0.175 5 0.96
31 426 A 0 25 1 19 47 0 1 0 1 0 0 0 0 0 0 0 5 0 0 0 95 0 0 1.315 43 0.56
32 427 A 0 0 0 0 0 0 8 1 0 0 2 0 0 0 0 1 82 0 5 0 97 0 0 0.692 23 0.38
33 428 A 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 0 0 92 0 0 0.060 2 0.98
34 429 A 0 0 0 0 0 0 0 0 4 0 6 81 0 0 0 3 0 0 6 0 78 0 0 0.744 24 0.60
35 430 A 2 0 0 0 0 0 15 0 0 0 0 0 76 8 0 0 0 0 0 0 66 0 0 0.755 25 0.65
36 431 A 0 0 0 0 0 0 0 0 0 0 80 0 0 0 0 0 0 0 20 0 66 0 0 0.496 16 0.64
37 432 A 0 26 0 0 0 0 0 0 0 74 0 0 0 0 0 0 0 0 0 0 53 0 0 0.577 19 0.21
38 433 A 2 6 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 53 0 0 0.310 10 0.89
39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.000 0 1.00
40 7 B 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 47 0 0 0.000 0 1.00
41 8 B 0 0 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0 0 64 0 47 0 0 0.654 21 0.57
42 9 B 0 2 0 0 0 0 0 0 0 91 6 0 0 0 0 0 0 0 0 0 47 0 0 0.339 11 0.79
43 10 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 2 49 0 0 0.100 3 0.96
44 11 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 92 49 0 0 0.283 9 0.90
45 12 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 49 0 0 0.000 0 1.00
46 13 B 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
47 14 B 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.100 3 0.99
48 15 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 49 0 0 0.000 0 1.00
49 16 B 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 49 0 0 0.100 3 0.96
50 17 B 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
51 18 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 49 0 0 0.000 0 1.00
52 19 B 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
53 20 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
54 21 B 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 98 0 0 49 0 0 0.100 3 0.97
55 22 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 96 0 49 0 0 0.171 5 0.82
56 23 B 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
57 24 B 0 0 0 0 0 0 0 0 0 0 0 0 0 98 2 0 0 0 0 0 49 0 0 0.100 3 0.97
58 25 B 0 0 0 0 0 0 98 0 0 0 0 0 2 0 0 0 0 0 0 0 49 0 0 0.100 3 0.97
59 26 B 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
60 27 B 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
61 28 B 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 49 0 0 0.100 3 0.91
62 29 B 0 0 0 0 0 0 0 0 0 98 2 0 0 0 0 0 0 0 0 0 49 0 0 0.100 3 0.96
63 30 B 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 49 0 0 0.000 0 1.00
64 31 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 98 49 0 0 0.100 3 0.98
65 32 B 2 0 0 0 0 0 0 80 4 0 14 0 0 0 0 0 0 0 0 0 49 0 0 0.670 22 0.70
66 33 B 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 49 0 0 0.000 0 1.00
67 34 B 0 0 0 0 0 0 0 35 48 0 4 11 0 0 0 0 0 0 0 2 46 0 0 1.181 39 0.48
68 35 B 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
85 6 440 1 rRr
129 27 440 1 pSn
130 29 462 1 pSn
131 29 445 1 pSn
132 4 423 1 rVs
132 27 447 1 pSn
136 4 459 1 rRr
137 4 459 1 rRr
138 4 460 1 rRr
139 4 459 1 rRr
140 4 459 1 rRr
141 4 459 1 rRr
142 4 459 1 rRr
143 4 459 1 rRr
144 4 454 1 rRr
145 4 454 1 rRr
146 4 452 1 rRr
147 4 452 1 rRr
148 4 454 1 rRr
149 4 459 1 rRr
//