Complet list of 1q3m hssp file
Complete list of 1q3m.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1Q3M
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-06
HEADER CALCIUM-BINDING PROTEIN 30-JUL-03 1Q3M
COMPND MOL_ID: 1; MOLECULE: OSTEOCALCIN; CHAIN: A; SYNONYM: GAMMA-CARBOXYGLUT
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: BOS TAURUS; ORGANISM_COMMON: CATTLE; O
AUTHOR T.L.DOWD,J.F.ROSEN,L.LI,C.M.GUNDBERG
DBREF 1Q3M A 1 49 UNP P02820 OSTC_BOVIN 52 100
SEQLENGTH 34
NCHAIN 1 chain(s) in 1Q3M data set
NALIGN 72
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : G7MDZ1_MACMU 0.91 0.91 1 34 67 100 34 0 0 100 G7MDZ1 Osteocalcin preproprotein OS=Macaca mulatta GN=BGLAP PE=4 SV=1
2 : G7NV82_MACFA 0.91 0.91 1 34 67 100 34 0 0 100 G7NV82 Gamma-carboxyglutamic acid-containing protein OS=Macaca fascicularis GN=EGM_01179 PE=4 SV=1
3 : OSTCN_ATEGE 0.91 0.91 1 34 67 100 34 0 0 100 A2D4U1 Osteocalcin OS=Ateles geoffroyi GN=BGLAP PE=3 SV=1
4 : OSTCN_BISPR 0.91 0.91 1 34 16 49 34 0 0 49 P83489 Osteocalcin OS=Bison priscus GN=BGLAP PE=1 SV=1
5 : OSTCN_BOVIN 0.91 0.91 1 34 67 100 34 0 0 100 P02820 Osteocalcin OS=Bos taurus GN=BGLAP PE=1 SV=2
6 : OSTCN_CAPHI 0.91 0.91 1 32 16 47 32 0 0 49 P0C225 Osteocalcin OS=Capra hircus GN=BGLAP PE=1 SV=1
7 : OSTCN_MACFA 0.91 0.91 1 34 16 49 34 0 0 49 P02819 Osteocalcin OS=Macaca fascicularis GN=BGLAP PE=1 SV=1
8 : OSTCN_MACMU 0.91 0.91 1 34 67 100 34 0 0 100 A2D670 Osteocalcin OS=Macaca mulatta GN=BGLAP PE=3 SV=1
9 : OSTCN_MACNE 0.91 0.91 1 34 67 100 34 0 0 100 A2T6K4 Osteocalcin OS=Macaca nemestrina GN=BGLAP PE=3 SV=1
10 : OSTCN_PONPY 0.91 0.91 1 34 67 100 34 0 0 100 P84350 Osteocalcin OS=Pongo pygmaeus GN=BGLAP PE=1 SV=2
11 : S7PKJ2_MYOBR 0.91 0.91 1 32 69 100 32 0 0 102 S7PKJ2 Osteocalcin OS=Myotis brandtii GN=D623_10031986 PE=4 SV=1
12 : A1A4R0_BOVIN 0.88 0.91 1 32 67 98 32 0 0 131 A1A4R0 BGLAP protein OS=Bos taurus GN=BGLAP PE=2 SV=1
13 : F7AAN0_CALJA 0.88 0.91 1 34 67 100 34 0 0 100 F7AAN0 Uncharacterized protein OS=Callithrix jacchus GN=PMF1 PE=4 SV=1
14 : G1Q0F9_MYOLU 0.88 0.88 1 33 69 101 33 0 0 102 G1Q0F9 Uncharacterized protein OS=Myotis lucifugus GN=BGLAP PE=4 SV=1
15 : H0XPN6_OTOGA 0.88 0.88 1 33 67 99 33 0 0 100 H0XPN6 Uncharacterized protein OS=Otolemur garnettii GN=BGLAP PE=4 SV=1
16 : J9JIL4_PIG 0.88 0.91 1 32 67 98 32 0 0 100 J9JIL4 Osteocalcin OS=Sus scrofa GN=BGLAP PE=4 SV=1
17 : K7G996_PELSI 0.88 0.88 1 34 67 100 34 0 0 100 K7G996 Uncharacterized protein OS=Pelodiscus sinensis GN=BGLAP PE=4 SV=1
18 : L5JWR4_PTEAL 0.88 0.88 1 33 54 86 33 0 0 87 L5JWR4 Osteocalcin OS=Pteropus alecto GN=PAL_GLEAN10005352 PE=4 SV=1
19 : OSTCN_GORGO 0.88 0.91 1 34 67 100 34 0 0 100 P84349 Osteocalcin OS=Gorilla gorilla gorilla GN=BGLAP PE=1 SV=2
20 : OSTCN_HORSE 0.88 0.91 1 34 16 49 34 0 0 49 P83005 Osteocalcin OS=Equus caballus GN=BGLAP PE=1 SV=1
21 : OSTCN_HUMAN 0.88 0.91 1 34 67 100 34 0 0 100 P02818 Osteocalcin OS=Homo sapiens GN=BGLAP PE=1 SV=2
22 : OSTCN_PANTR 0.88 0.91 1 34 67 100 34 0 0 100 P84348 Osteocalcin OS=Pan troglodytes GN=BGLAP PE=1 SV=2
23 : OSTCN_PIG 0.88 0.91 1 32 16 47 32 0 0 49 Q8HYY9 Osteocalcin OS=Sus scrofa GN=BGLAP PE=1 SV=2
24 : Q1ZZ82_SHEEP 0.88 0.91 1 34 66 99 34 0 0 99 Q1ZZ82 Osteocalcin OS=Ovis aries GN=BGLAP PE=4 SV=1
25 : U3EBX3_CALJA 0.88 0.91 1 34 67 100 34 0 0 100 U3EBX3 Osteocalcin preproprotein OS=Callithrix jacchus GN=BGLAP PE=4 SV=1
26 : W5P6H4_SHEEP 0.87 0.90 1 31 66 96 31 0 0 129 W5P6H4 Uncharacterized protein OS=Ovis aries GN=BGLAP PE=4 SV=1
27 : B7ZS46_XENLA 0.85 0.91 1 34 68 101 34 0 0 101 B7ZS46 Bone Gla protein OS=Xenopus laevis GN=BGP PE=4 SV=1
28 : F1PDX0_CANFA 0.85 0.91 1 34 70 103 34 0 0 103 F1PDX0 Osteocalcin OS=Canis familiaris GN=BGLAP PE=4 SV=1
29 : F6XAH2_XENTR 0.85 0.91 1 34 70 103 34 0 0 103 F6XAH2 Osteocalcin OS=Xenopus tropicalis GN=bglap PE=4 SV=1
30 : F6Z5P3_HORSE 0.85 0.88 1 33 67 99 33 0 0 100 F6Z5P3 Osteocalcin OS=Equus caballus GN=BGLAP PE=4 SV=1
31 : G1M772_AILME 0.85 0.91 1 34 67 100 34 0 0 100 G1M772 Uncharacterized protein OS=Ailuropoda melanoleuca GN=BGLAP PE=4 SV=1
32 : M3XZU2_MUSPF 0.85 0.88 1 33 67 99 33 0 0 100 M3XZU2 Uncharacterized protein OS=Mustela putorius furo GN=BGLAP PE=4 SV=1
33 : OSTCN_CANFA 0.85 0.91 1 34 16 49 34 0 0 49 P81455 Osteocalcin OS=Canis familiaris GN=BGLAP PE=1 SV=1
34 : OSTCN_DRONO 0.85 0.91 1 34 15 48 34 0 0 48 P15504 Osteocalcin OS=Dromaius novaehollandiae GN=BGLAP PE=1 SV=1
35 : OSTCN_XENLA 0.85 0.91 1 34 68 101 34 0 0 101 P40147 Osteocalcin OS=Xenopus laevis GN=bglap PE=1 SV=2
36 : OSTCN_XENTR 0.85 0.91 1 34 68 101 34 0 0 101 Q6DJ00 Osteocalcin OS=Xenopus tropicalis GN=bglap PE=3 SV=1
37 : Q9TT28_CANFA 0.85 0.88 1 26 9 34 26 0 0 34 Q9TT28 Bone gamma-carboxyglutamate protein osteocalcin (Fragment) OS=Canis familiaris GN=gla PE=2 SV=1
38 : OSTCN_MACEU 0.84 0.84 2 33 17 48 32 0 0 49 P0C226 Osteocalcin OS=Macropus eugenii GN=BGLAP PE=1 SV=1
39 : F6VNB0_MONDO 0.82 0.82 1 33 67 99 33 0 0 100 F6VNB0 Uncharacterized protein OS=Monodelphis domestica GN=BGLAP PE=4 SV=1
40 : F6ZUW4_MONDO 0.82 0.82 1 33 68 100 33 0 0 101 F6ZUW4 Uncharacterized protein OS=Monodelphis domestica GN=BGLAP PE=4 SV=1
41 : G3WMB3_SARHA 0.82 0.82 1 33 66 98 33 0 0 99 G3WMB3 Uncharacterized protein OS=Sarcophilus harrisii GN=BGLAP PE=4 SV=1
42 : OSTCN_CAMBA 0.82 0.88 1 33 16 48 33 0 0 49 P86314 Osteocalcin OS=Camelus bactrianus GN=BGLAP PE=1 SV=1
43 : OSTCN_CAMDR 0.82 0.88 1 33 16 48 33 0 0 49 P86313 Osteocalcin OS=Camelus dromedarius GN=BGLAP PE=1 SV=1
44 : OSTCN_FELCA 0.82 0.88 1 34 16 49 34 0 0 49 P02821 Osteocalcin OS=Felis catus GN=BGLAP PE=1 SV=1
45 : OSTCN_LAMGU 0.82 0.88 1 33 16 48 33 0 0 49 P86315 Osteocalcin OS=Lama guanicoe GN=BGLAP PE=1 SV=1
46 : Q765Q8_LITCT 0.82 0.88 1 34 67 100 34 0 0 100 Q765Q8 Osteocalcin OS=Lithobates catesbeiana GN=BGLAP PE=4 SV=1
47 : S9XKI0_9CETA 0.82 0.88 1 33 278 310 33 0 0 311 S9XKI0 Polyamine-modulated factor 1-like protein OS=Camelus ferus GN=CB1_000161021 PE=4 SV=1
48 : G3HG91_CRIGR 0.79 0.85 1 33 65 97 33 0 0 99 G3HG91 Osteocalcin OS=Cricetulus griseus GN=I79_009612 PE=4 SV=1
49 : G3THN5_LOXAF 0.79 0.85 1 34 65 98 34 0 0 98 G3THN5 Uncharacterized protein OS=Loxodonta africana GN=BGLAP PE=4 SV=1
50 : OSTCN_CHICK 0.79 0.91 1 34 64 97 34 0 0 97 P02822 Osteocalcin OS=Gallus gallus GN=BGLAP PE=1 SV=2
51 : G1TTE8_RABIT 0.76 0.91 1 34 67 100 34 0 0 100 G1TTE8 Osteocalcin OS=Oryctolagus cuniculus GN=BGLAP PE=4 SV=1
52 : G5AR97_HETGA 0.76 0.88 1 33 67 99 33 0 0 100 G5AR97 Osteocalcin OS=Heterocephalus glaber GN=GW7_14286 PE=4 SV=1
53 : H0YZW6_TAEGU 0.76 0.88 1 34 33 66 34 0 0 66 H0YZW6 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=BGLAP PE=4 SV=1
54 : L9KAX9_TUPCH 0.76 0.85 1 33 68 100 33 0 0 101 L9KAX9 Osteocalcin OS=Tupaia chinensis GN=TREES_T100016136 PE=4 SV=1
55 : OSTCN_RABIT 0.76 0.91 1 34 16 49 34 0 0 49 P39056 Osteocalcin OS=Oryctolagus cuniculus GN=BGLAP PE=1 SV=1
56 : U3JIR5_FICAL 0.76 0.88 1 34 68 101 34 0 0 101 U3JIR5 Uncharacterized protein OS=Ficedula albicollis GN=BGLAP PE=4 SV=1
57 : M7B738_CHEMY 0.74 0.85 1 34 182 215 34 0 0 215 M7B738 Osteocalcin OS=Chelonia mydas GN=UY3_11539 PE=4 SV=1
58 : I3MZK4_SPETR 0.73 0.85 1 33 67 99 33 0 0 100 I3MZK4 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=BGLAP PE=4 SV=1
59 : OSTCN_RAT 0.73 0.85 1 33 65 97 33 0 0 99 P04640 Osteocalcin OS=Rattus norvegicus GN=Bglap PE=1 SV=1
60 : OSTC2_MOUSE 0.56 0.75 1 32 61 92 32 0 0 95 P86547 Osteocalcin-2 OS=Mus musculus GN=Bglap2 PE=2 SV=1
61 : OSTCN_MOUSE 0.56 0.75 1 32 61 92 32 0 0 95 P86546 Osteocalcin OS=Mus musculus GN=Bglap PE=2 SV=1
62 : OSTR_MOUSE 0.53 0.78 1 32 61 92 32 0 0 95 P54615 Osteocalcin-related protein OS=Mus musculus GN=Bglap-rs1 PE=2 SV=1
63 : Q78H72_MOUSE 0.53 0.78 1 32 61 92 32 0 0 95 Q78H72 Bglap-rs1 protein OS=Mus musculus GN=Bglap3 PE=4 SV=1
64 : Q4SYD2_TETNG 0.52 0.64 1 33 157 189 33 0 0 192 Q4SYD2 Chromosome undetermined SCAF12091, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00010386001 PE=4 SV=1
65 : Q804T7_TETNG 0.52 0.64 1 33 38 70 33 0 0 73 Q804T7 Bone Gla protein (Fragment) OS=Tetraodon nigroviridis GN=BGP PE=4 SV=1
66 : Q804T8_TAKRU 0.52 0.64 1 33 24 56 33 0 0 59 Q804T8 Bone Gla protein OS=Takifugu rubripes GN=BGP PE=4 SV=1
67 : I3KNH8_ORENI 0.50 0.65 1 34 163 196 34 0 0 198 I3KNH8 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100695221 PE=4 SV=1
68 : K7NTD0_DIPSG 0.50 0.65 1 34 221 254 34 0 0 256 K7NTD0 Osteocalcin 2 OS=Diplodus sargus GN=OC2 PE=2 SV=1
69 : OSTCN_XIPGL 0.50 0.65 1 34 12 45 34 0 0 47 P02823 Osteocalcin OS=Xiphias gladius GN=bglap PE=1 SV=1
70 : W5KVY8_ASTMX 0.50 0.65 1 34 138 171 34 0 0 173 W5KVY8 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
71 : OSTCN_ARGRE 0.48 0.64 2 34 63 95 33 0 0 97 Q800Y1 Osteocalcin OS=Argyrosomus regius GN=bglap PE=1 SV=1
72 : M4ASR4_XIPMA 0.47 0.65 1 34 152 185 34 0 0 187 M4ASR4 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 16 A L 0 0 103 71 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
2 17 A X - 0 0 192 72 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
3 18 A P S S+ 0 0 84 73 52 PPPPPPPPPPPPPPPPGPPPPPPPPPSPSPPPPASSPNQQQPPPPSPPLAPPAPPAGPPPPPPSSSSSSS
4 19 A K > + 0 0 73 73 83 KKKKKKKKKKKKRKKRKKRRRRRRRRQKQRKKKQQQKKKKKKKKKKKKKQKRKKKKKMHTTTTLLLLLLL
5 20 A R T 3> S+ 0 0 70 73 3 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRRRRRRRRRRRRRRRRRRR
6 21 A X T 34 S+ 0 0 159 72 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
7 22 A V T X> S+ 0 0 80 73 18 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVMVVIVVQQLLVVVVVVV
8 23 A a T 34 S+ 0 0 6 73 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
9 24 A X T 3< S+ 0 0 133 72 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
10 25 A L T <4 S+ 0 0 133 73 11 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLV
11 26 A N S >X S- 0 0 34 73 12 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNSNSNNNNNDDNNNNNNN
12 27 A P H 3> S+ 0 0 94 73 51 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPIIIVIVM
13 28 A D H 34 S+ 0 0 135 73 55 DDDDDDDDDDDDDDDDDDDDDDDDDDDNDDNDNDDDNDDDDDDDDSDNDDDDDDDDDNNAAAAAAAAASA
14 29 A a H X4 S+ 0 0 3 73 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
15 30 A D H >< S+ 0 0 52 73 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
16 31 A E T >X S+ 0 0 137 73 1 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
17 32 A L H X>>S+ 0 0 14 73 6 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMMMMM
18 33 A A H <45S+ 0 0 62 73 14 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASSSSAAAAAAA
19 34 A D H <45S+ 0 0 126 73 7 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNNDDDDEDD
20 35 A H H <<5S- 0 0 135 73 65 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQQHQHQHHQQHQHQQHQHQQQQTTTTTTT
21 36 A I T <5 - 0 0 65 73 72 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMMIMIMIIIVMIIVIIIIYYYYAAASAAN
22 37 A G < + 0 0 39 73 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
23 38 A F S S- 0 0 140 73 29 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFLFLFFFFLLLLIIIIIII
24 39 A Q S >> S+ 0 0 66 73 73 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSSQQQQQQQHQQQQAQQHQQKKKKVVVVVVV
25 40 A E H 3> S+ 0 0 86 73 58 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEEEEEEEEEEDEEEDEEDDEEDEKDDTTTTAAAAAAA
26 41 A A H >> S+ 0 0 7 73 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
27 42 A Y H X4 S+ 0 0 7 72 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
28 43 A R H >< S+ 0 0 135 72 64 RRRRRRRRRRRRRRRRRRRRRRRRRRRQRRRRQRRR RRRRRRRRRRSRRQQRRQRRQKKKRRTTATVIT
29 44 A R H << S+ 0 0 181 72 56 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR RRRRRRRRRRRRRRRRRRRRRRRRRRAAAAAAT
30 45 A F T << S+ 0 0 88 72 16 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF FFFFFFFFFFFFFFFYFFYYFIIIIIYYYYYYY
31 46 A Y S < S- 0 0 130 72 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
32 47 A G S S+ 0 0 29 71 1 GGGGGGGGGGGAGGGGGGGGGGGGG GGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
33 48 A P 0 0 72 62 45 PPPPP PPPP PTT PTPPPP PP PPPTPTPPPP TTTTTTTTPTTTPPTLTPLATT PPPPPPP
34 49 A V 0 0 30 41 6 VVVVV VVVV V V VVVV VV VVV V VVVV V I VVV V VVV VVIV
## ALIGNMENTS 71 - 72
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 16 A L 0 0 103 71 0 L
2 17 A X - 0 0 192 72 0 EE
3 18 A P S S+ 0 0 84 73 52 SS
4 19 A K > + 0 0 73 73 83 LL
5 20 A R T 3> S+ 0 0 70 73 3 RK
6 21 A X T 34 S+ 0 0 159 72 0 EE
7 22 A V T X> S+ 0 0 80 73 18 VV
8 23 A a T 34 S+ 0 0 6 73 0 CC
9 24 A X T 3< S+ 0 0 133 72 0 EE
10 25 A L T <4 S+ 0 0 133 73 11 TL
11 26 A N S >X S- 0 0 34 73 12 NN
12 27 A P H 3> S+ 0 0 94 73 51 MV
13 28 A D H 34 S+ 0 0 135 73 55 AA
14 29 A a H X4 S+ 0 0 3 73 0 CC
15 30 A D H >< S+ 0 0 52 73 0 DD
16 31 A E T >X S+ 0 0 137 73 1 ED
17 32 A L H X>>S+ 0 0 14 73 6 MM
18 33 A A H <45S+ 0 0 62 73 14 AA
19 34 A D H <45S+ 0 0 126 73 7 DD
20 35 A H H <<5S- 0 0 135 73 65 AT
21 36 A I T <5 - 0 0 65 73 72 QE
22 37 A G < + 0 0 39 73 0 GG
23 38 A F S S- 0 0 140 73 29 II
24 39 A Q S >> S+ 0 0 66 73 73 VV
25 40 A E H 3> S+ 0 0 86 73 58 AA
26 41 A A H >> S+ 0 0 7 73 0 AA
27 42 A Y H X4 S+ 0 0 7 72 0 YY
28 43 A R H >< S+ 0 0 135 72 64 QT
29 44 A R H << S+ 0 0 181 72 56 AA
30 45 A F T << S+ 0 0 88 72 16 FY
31 46 A Y S < S- 0 0 130 72 0 YY
32 47 A G S S+ 0 0 29 71 1 GG
33 48 A P 0 0 72 62 45 PP
34 49 A V 0 0 30 41 6 IV
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 16 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0.000 0 1.00
2 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 72 0 0 0.000 0 1.00
3 18 A 0 1 0 0 0 0 0 3 5 66 19 0 0 0 0 0 4 0 1 0 73 0 0 1.099 36 0.48
4 19 A 0 12 0 1 0 0 0 0 0 0 0 5 0 1 16 55 8 0 0 0 73 0 0 1.367 45 0.17
5 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 3 0 0 0 0 73 0 0 0.126 4 0.96
6 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 72 0 0 0.000 0 1.00
7 22 A 90 3 3 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 73 0 0 0.446 14 0.81
8 23 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 73 0 0 0.000 0 1.00
9 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 72 0 0 0.000 0 1.00
10 25 A 3 96 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 73 0 0 0.198 6 0.89
11 26 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 93 3 73 0 0 0.296 9 0.88
12 27 A 4 0 5 3 0 0 0 0 1 86 0 0 0 0 0 0 0 0 0 0 73 0 0 0.575 19 0.48
13 28 A 0 0 0 0 0 0 0 0 16 0 3 0 0 0 0 0 0 0 10 71 73 0 0 0.862 28 0.44
14 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 73 0 0 0.000 0 1.00
15 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 73 0 0 0.000 0 1.00
16 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 1 73 0 0 0.072 2 0.98
17 32 A 0 88 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 0 0 0.373 12 0.94
18 33 A 0 0 0 0 0 0 0 0 95 0 5 0 0 0 0 0 0 0 0 0 73 0 0 0.212 7 0.85
19 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 96 73 0 0 0.198 6 0.93
20 35 A 0 0 0 0 0 0 0 0 1 0 0 11 0 68 0 0 19 0 0 0 73 0 0 0.877 29 0.35
21 36 A 3 0 73 7 0 0 5 0 7 0 1 0 0 0 0 0 1 1 1 0 73 0 0 1.092 36 0.28
22 37 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 73 0 0 0.000 0 1.00
23 38 A 0 10 12 0 78 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 73 0 0 0.676 22 0.71
24 39 A 12 0 0 0 0 0 0 0 1 0 4 0 0 3 0 5 74 0 0 0 73 0 0 0.929 31 0.27
25 40 A 0 0 0 0 0 0 0 0 12 0 0 5 0 0 0 1 0 68 0 12 73 0 0 0.993 33 0.42
26 41 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 73 0 0 0.000 0 1.00
27 42 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
28 43 A 1 0 1 0 0 0 0 0 1 0 1 7 0 0 74 4 10 0 0 0 72 0 0 1.007 33 0.36
29 44 A 0 0 0 0 0 0 0 0 11 0 0 1 0 0 88 0 0 0 0 0 72 0 0 0.420 14 0.44
30 45 A 0 0 7 0 78 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.668 22 0.83
31 46 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
32 47 A 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 0 0 0 71 0 0 0.074 2 0.99
33 48 A 0 3 0 0 0 0 0 0 2 63 0 32 0 0 0 0 0 0 0 0 62 0 0 0.834 27 0.55
34 49 A 93 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.262 8 0.94
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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