Complet list of 1pzr hssp file
Complete list of 1pzr.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PZR
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-05
HEADER TRANSFERASE 14-JUL-03 1PZR
COMPND MOL_ID: 1; MOLECULE: ERYTHRONOLIDE SYNTHASE; CHAIN: A, B; FRAGMENT: RE
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SACCHAROPOLYSPORA ERYTHRAEA; ORGANISM_
AUTHOR R.W.BROADHURST,D.NIETLISPACH,M.P.WHEATCROFT,P.F.LEADLAY, K.J.WEISSMAN
DBREF 1PZR A 61 80 UNP Q03132 ERY2_SACER 3548 3567
DBREF 1PZR A 83 120 UNP Q03133 ERY3_SACER 2 39
DBREF 1PZR B 61 80 UNP Q03132 ERY2_SACER 3548 3567
DBREF 1PZR B 83 120 UNP Q03133 ERY3_SACER 2 39
SEQLENGTH 60
NCHAIN 2 chain(s) in 1PZR data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 19
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A1KMU1_MYCBP 0.39 0.54 15 60 2 47 46 0 0 2112 A1KMU1 Probable polyketide synthase pks1 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks1 PE=4 SV=1
2 : C1AG62_MYCBT 0.39 0.54 15 60 2 47 46 0 0 2112 C1AG62 Putative polyketide synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pks1 PE=4 SV=1
3 : D5YVN0_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2114 D5YVN0 Polyketide synthase PKS1 OS=Mycobacterium tuberculosis 02_1987 GN=TBBG_03153 PE=4 SV=1
4 : D6FPD8_9MYCO 0.39 0.54 15 60 2 47 46 0 0 2112 D6FPD8 Polyketide synthase pks1 OS=Mycobacterium africanum K85 GN=TBOG_03496 PE=4 SV=1
5 : D7EVT8_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2114 D7EVT8 Putative uncharacterized protein OS=Mycobacterium tuberculosis 94_M4241A GN=TBAG_01834 PE=4 SV=1
6 : F8M4U6_MYCA0 0.39 0.54 15 60 2 47 46 0 0 2112 F8M4U6 Putative polyketide synthase OS=Mycobacterium africanum (strain GM041182) GN=pks PE=4 SV=1
7 : F9UXI5_MYCBI 0.39 0.54 15 60 2 47 46 0 0 2112 F9UXI5 Probable polyketide synthase pks1 OS=Mycobacterium bovis BCG str. Moreau RDJ GN=pks1 PE=4 SV=1
8 : G2UV50_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2114 G2UV50 Polyketide synthetase OS=Mycobacterium tuberculosis NCGM2209 GN=pks1 PE=4 SV=1
9 : G7QVF2_MYCBI 0.39 0.54 15 60 2 47 46 0 0 2112 G7QVF2 Putative polyketide synthase1 OS=Mycobacterium bovis BCG str. Mexico GN=pks1 PE=4 SV=1
10 : L0Q0M1_9MYCO 0.39 0.54 15 60 2 47 46 0 0 2114 L0Q0M1 Putative polyketide synthase Pks1 OS=Mycobacterium canettii CIPT 140060008 GN=pks PE=4 SV=1
11 : L0QAP0_9MYCO 0.39 0.54 15 60 2 47 46 0 0 2114 L0QAP0 Putative polyketide synthase Pks1 OS=Mycobacterium canettii CIPT 140070008 GN=BN43_40654 PE=4 SV=1
12 : M1HXT8_MYCBI 0.39 0.54 15 60 2 47 46 0 0 2112 M1HXT8 Polyketide synthase PKS1 OS=Mycobacterium bovis BCG str. Korea 1168P GN=K60_030530 PE=4 SV=1
13 : MSL7_MYCBO 0.39 0.54 15 60 2 47 46 0 0 2112 Q7TXK8 Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=pks15/1 PE=1 SV=1
14 : V2VN09_MYCBI 0.39 0.54 15 60 2 47 46 0 0 1903 V2VN09 Beta-ketoacyl synthase OS=Mycobacterium bovis AN5 GN=O217_15620 PE=4 SV=1
15 : V2W1N7_MYCBI 0.39 0.54 15 60 2 47 46 0 0 2112 V2W1N7 Beta-ketoacyl synthase OS=Mycobacterium bovis 04-303 GN=O216_15920 PE=4 SV=1
16 : W6GQS7_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2114 W6GQS7 Putative polyketide synthase Pks1 OS=Mycobacterium tuberculosis HKBS1 GN=pks1 PE=4 SV=1
17 : W6H4J2_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2114 W6H4J2 Putative polyketide synthase Pks1 OS=Mycobacterium tuberculosis BT2 GN=pks1 PE=4 SV=1
18 : W6HI67_MYCTX 0.39 0.54 15 60 2 47 46 0 0 2115 W6HI67 Putative polyketide synthase Pks1 OS=Mycobacterium tuberculosis BT1 GN=pks1 PE=4 SV=1
19 : D1B5Z8_THEAS 0.37 0.57 4 57 181 234 54 0 0 586 D1B5Z8 Penicillin-binding protein 2 (Precursor) OS=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) GN=Taci_1207 PE=4 SV=1
## ALIGNMENTS 1 - 19
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 61 A A 0 0 122 1 0
2 62 A S > - 0 0 83 1 0
3 63 A D H >> S+ 0 0 91 1 0
4 64 A D H 3> S+ 0 0 98 2 0 D
5 65 A E H 3> S+ 0 0 135 2 0 E
6 66 A L H S- 0 0 148 20 106 QQQQQQQQQQQQQQQQQQV
29 89 A T H > S+ 0 0 54 20 125 QQQQQQQQQQQQQQQQQQY
30 90 A E H > S+ 0 0 43 20 84 SSSSSSSSSSSSSSSSSSE
31 91 A E H > S+ 0 0 72 20 0 EEEEEEEEEEEEEEEEEEE
32 92 A K H >X S+ 0 0 34 20 46 KKKKKKKKKKKKKKKKKKE
33 93 A L H 3X>S+ 0 0 8 20 0 LLLLLLLLLLLLLLLLLLL
34 94 A R H 3X5S+ 0 0 107 20 130 FFFFFFFFFFFFFFFFFFR
35 95 A R H X S+ 0 0 136 20 66 KKKKKKKKKKKKKKKKKKE
40 100 A T H 3X S+ 0 0 0 20 101 VVVVVVVVVVVVVVVVVVE
41 101 A V H 3X S+ 0 0 0 20 38 AAAAAAAAAAAAAAAAAAA
42 102 A T H X S+ 0 0 154 20 26 RRRRRRRRRRRRRRRRRRK
51 111 A L H 3X S+ 0 0 26 20 0 LLLLLLLLLLLLLLLLLLL
52 112 A R H 3< S+ 0 0 157 20 0 RRRRRRRRRRRRRRRRRRR
53 113 A E H <>>S+ 0 0 114 20 19 EEEEEEEEEEEEEEEEEED
54 114 A V H X5S+ 0 0 27 20 104 YYYYYYYYYYYYYYYYYYV
55 115 A E H <5S+ 0 0 91 20 49 EEEEEEEEEEEEEEEEEES
56 116 A H H 45S+ 0 0 136 20 52 QQQQQQQQQQQQQQQQQQH
57 117 A R H <5S+ 0 0 180 20 0 RRRRRRRRRRRRRRRRRRR
58 118 A A << - 0 0 38 19 0 AAAAAAAAAAAAAAAAAA
59 119 A G 0 0 49 19 73 TTTTTTTTTTTTTTTTTT
60 120 A E 0 0 267 19 0 EEEEEEEEEEEEEEEEEE
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 61 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
2 62 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
3 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0 0.000 0 1.00
4 64 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00
5 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 2 0 0 0.000 0 1.00
6 66 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.000 0 1.00
7 67 A 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 0 50 0 0 2 0 0 0.693 23 -0.47
8 68 A 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 50 2 0 0 0.693 23 0.13
9 69 A 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 23 0.87
10 70 A 0 50 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 23 -0.07
11 71 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 2 0 0 0.000 0 1.00
12 72 A 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 50 0 0 0 2 0 0 0.693 23 0.20
13 73 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 2 0 0 0.000 0 1.00
14 74 A 0 0 0 0 50 0 50 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0.693 23 0.93
15 75 A 0 0 90 0 0 0 0 5 0 0 0 0 0 0 5 0 0 0 0 0 20 0 0 0.394 13 -0.20
16 76 A 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 90 0 0 20 0 0 0.325 10 0.35
17 77 A 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 90 0 0 20 0 0 0.325 10 0.35
18 78 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90 5 0 5 20 0 0 0.394 13 0.47
19 79 A 0 0 0 5 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 5 20 0 0 0.394 13 0.07
20 80 A 0 5 5 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 20 0 0 0.394 13 0.06
21 81 A 0 5 0 90 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.394 13 0.25
22 82 A 0 0 0 5 0 0 0 0 0 0 90 0 0 0 0 5 0 0 0 0 20 0 0 0.394 13 -0.01
23 83 A 90 0 5 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 20 0 0 0.394 13 0.37
24 84 A 0 0 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 90 0 0 20 0 0 0.325 10 0.35
25 85 A 0 0 5 0 0 0 0 90 0 0 0 0 0 0 0 0 0 0 0 5 20 0 0 0.394 13 0.08
26 86 A 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 0 5 5 0 20 0 0 0.394 13 0.17
27 87 A 0 0 0 0 0 0 0 5 5 0 0 0 0 0 0 0 0 0 0 90 20 0 0 0.394 13 0.32
28 88 A 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 90 0 0 0 20 0 0 0.394 13 -0.06
29 89 A 0 0 0 0 0 0 5 0 0 0 0 5 0 0 0 0 90 0 0 0 20 0 0 0.394 13 -0.25
30 90 A 0 0 0 0 0 0 0 0 0 0 90 0 0 0 0 0 0 10 0 0 20 0 0 0.325 10 0.15
31 91 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 20 0 0 0.000 0 1.00
32 92 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 5 0 0 20 0 0 0.199 6 0.54
33 93 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
34 94 A 0 0 0 0 90 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 20 0 0 0.325 10 -0.30
35 95 A 0 0 0 0 0 0 0 5 0 0 0 0 0 90 5 0 0 0 0 0 20 0 0 0.394 13 0.06
36 96 A 0 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 5 0 0 20 0 0 0.199 6 0.23
37 97 A 5 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.73
38 98 A 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 95 0 0 0 0 20 0 0 0.199 6 0.39
39 99 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 90 0 5 0 0 20 0 0 0.394 13 0.34
40 100 A 90 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 5 0 0 20 0 0 0.394 13 -0.01
41 101 A 5 0 0 0 0 0 0 0 95 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.61
42 102 A 95 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.61
43 103 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 20 0 0 0.000 0 1.00
44 104 A 5 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.199 6 0.73
45 105 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 20 0 0 0.000 0 1.00
46 106 A 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 0 0 90 0 0 20 0 0 0.325 10 0.15
47 107 A 5 0 0 0 0 0 0 0 0 0 0 90 0 0 5 0 0 0 0 0 20 0 0 0.394 13 0.01
48 108 A 0 0 0 0 0 0 0 5 0 0 0 5 0 0 90 0 0 0 0 0 20 0 0 0.394 13 -0.13
49 109 A 0 0 0 0 0 0 0 0 95 0 0 0 0 0 5 0 0 0 0 0 20 0 0 0.199 6 0.31
50 110 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 5 0 0 0 0 20 0 0 0.199 6 0.73
51 111 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.000 0 1.00
52 112 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 20 0 0 0.000 0 1.00
53 113 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 5 20 0 0 0.199 6 0.81
54 114 A 10 0 0 0 0 0 90 0 0 0 0 0 0 0 0 0 0 0 0 0 20 0 0 0.325 10 -0.04
55 115 A 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 95 0 0 20 0 0 0.199 6 0.50
56 116 A 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 90 0 0 0 20 0 0 0.325 10 0.48
57 117 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 20 0 0 0.000 0 1.00
58 118 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 19 0 0 0.000 0 1.00
59 119 A 0 0 0 0 0 0 0 5 0 0 0 95 0 0 0 0 0 0 0 0 19 0 0 0.206 6 0.27
60 120 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 19 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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