Complet list of 1pzq hssp file
Complete list of 1pzq.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PZQ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-06
HEADER TRANSFERASE 14-JUL-03 1PZQ
COMPND MOL_ID: 1; MOLECULE: ERYTHRONOLIDE SYNTHASE; CHAIN: A, B; FRAGMENT: C-
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SACCHAROPOLYSPORA ERYTHRAEA; ORGANISM_
AUTHOR R.W.BROADHURST,D.NIETLISPACH,M.P.WHEATCROFT,P.F.LEADLAY, K.J.WEISSMAN
DBREF 1PZQ A 3 60 UNP Q03132 ERYA2_SACER 3490 3547
DBREF 1PZQ B 3 60 UNP Q03132 ERYA2_SACER 3490 3547
SEQLENGTH 60
NCHAIN 2 chain(s) in 1PZQ data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A4F7P0_SACEN2QO3 1.00 1.00 3 60 3490 3547 58 0 0 3567 A4F7P0 EryAII Erythromycin polyketide synthase modules 3 and 4 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=eryAII PE=4 SV=1
2 : ERYA2_SACER 2QO3 1.00 1.00 3 60 3490 3547 58 0 0 3567 Q03132 Erythronolide synthase, modules 3 and 4 OS=Saccharopolyspora erythraea GN=eryA PE=1 SV=3
3 : Q5UNP5_SACER 1.00 1.00 3 60 3490 3547 58 0 0 3567 Q5UNP5 EryAII OS=Saccharopolyspora erythraea GN=eryAII PE=4 SV=1
4 : T2S3W5_SACER 1.00 1.00 3 60 3490 3547 58 0 0 3567 T2S3W5 Alcohol dehydrogenase OS=Saccharopolyspora erythraea D GN=N599_06325 PE=4 SV=1
5 : Q9F829_9ACTO 0.53 0.78 2 60 3484 3542 59 0 0 3562 Q9F829 Megalomicin 6-deoxyerythronolide B synthase 2 OS=Micromonospora megalomicea subsp. nigra GN=megAII PE=4 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G 0 0 135 1 0
2 2 A S - 0 0 117 2 73 A
3 3 A A S S+ 0 0 98 6 79 AAAAD
4 4 A A + 0 0 78 6 73 AAAAS
5 5 A S - 0 0 92 6 73 SSSSA
6 6 A P S S+ 0 0 63 6 0 PPPPP
7 7 A A + 0 0 43 6 79 AAAAD
8 8 A V S > S- 0 0 45 6 0 VVVVV
9 9 A D T 4 S- 0 0 139 6 53 DDDDG
10 10 A I T >> S+ 0 0 11 6 26 IIIIV
11 11 A G H 3> S+ 0 0 21 6 0 GGGGG
12 12 A D H 3X S+ 0 0 63 6 79 DDDDA
13 13 A R H <> S+ 0 0 26 6 0 RRRRR
14 14 A L H X S+ 0 0 1 6 0 LLLLL
15 15 A D H X S+ 0 0 91 6 0 DDDDD
16 16 A E H X S+ 0 0 77 6 33 EEEED
17 17 A L H X S+ 0 0 0 6 0 LLLLL
18 18 A E H X S+ 0 0 27 6 0 EEEEE
19 19 A K H X S+ 0 0 123 6 46 KKKKR
20 20 A A H >X S+ 0 0 0 6 0 AAAAA
21 21 A L H 3X S+ 0 0 1 6 0 LLLLL
22 22 A E H 3< S+ 0 0 81 6 33 EEEED
23 23 A A H << S+ 0 0 37 6 0 AAAAA
24 24 A L H >< S+ 0 0 13 6 0 LLLLL
25 25 A S T 3< S- 0 0 40 6 73 SSSSP
26 26 A A T 3 S+ 0 0 45 6 79 AAAAD
27 27 A E S < S- 0 0 117 6 79 EEEEA
28 28 A D S S- 0 0 140 6 53 DDDDQ
29 29 A G - 0 0 34 6 0 GGGGG
30 30 A H >> + 0 0 51 6 0 HHHHH
31 31 A D H 3> + 0 0 56 6 79 DDDDA
32 32 A D H 3> S+ 0 0 67 6 0 DDDDD
33 33 A V H <> S+ 0 0 1 6 0 VVVVV
34 34 A G H X S+ 0 0 4 6 0 GGGGG
35 35 A Q H X S+ 0 0 87 6 86 QQQQA
36 36 A R H X S+ 0 0 134 6 0 RRRRR
37 37 A L H X S+ 0 0 0 6 0 LLLLL
38 38 A E H X S+ 0 0 115 6 0 EEEEE
39 39 A S H X S+ 0 0 57 6 73 SSSSA
40 40 A L H X S+ 0 0 6 6 0 LLLLL
41 41 A L H X>S+ 0 0 10 6 0 LLLLL
42 42 A R H X5S+ 0 0 180 6 0 RRRRR
43 43 A R H X5S+ 0 0 131 6 0 RRRRR
44 44 A W H X5S+ 0 0 1 6 0 WWWWW
45 45 A N H X5S+ 0 0 48 6 73 NNNNQ
46 46 A S H X