Complet list of 1px9 hssp file
Complete list of 1px9.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PX9
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-06
HEADER TOXIN 03-JUL-03 1PX9
COMPND MOL_ID: 1; MOLECULE: ERGTOXIN; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: CENTRUROIDES NOXIUS; ORGANISM_COMMON:
AUTHOR K.FRENAL,K.WECKER,G.B.GURROLA,L.D.POSSANI,N.WOLFF, M.DELEPIERRE
DBREF 1PX9 A 1 42 UNP Q86QT3 SEK1_CENNO 1 42
SEQLENGTH 42
NCHAIN 1 chain(s) in 1PX9 data set
NALIGN 27
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : KGX11_CENNO 1PX9 1.00 1.00 1 42 21 62 42 0 0 62 Q86QT3 Potassium channel toxin gamma-KTx 1.1 OS=Centruroides noxius GN=ERG1 PE=1 SV=1
2 : KGX14_CENSC 0.98 1.00 1 42 1 42 42 0 0 42 Q86QU6 Potassium channel toxin gamma-KTx 1.4 OS=Centruroides sculpturatus GN=ERG1 PE=2 SV=1
3 : KGX15_CENLL 0.95 1.00 1 42 1 42 42 0 0 42 Q86QV0 Potassium channel toxin gamma-KTx 1.5 OS=Centruroides limpidus limpidus GN=ERG1 PE=1 SV=1
4 : KGX16_CENEX 0.95 1.00 1 42 1 42 42 0 0 42 Q86QU1 Potassium channel toxin gamma-KTx 1.6 OS=Centruroides exilicauda GN=ERG1 PE=2 SV=1
5 : KGX17_CENEL 0.95 1.00 1 42 1 42 42 0 0 42 P0C892 Potassium channel toxin gamma-KTx 1.7 OS=Centruroides elegans PE=1 SV=1
6 : KGX12_CENEL 0.93 0.95 1 42 1 42 42 0 0 42 Q86QV6 Potassium channel toxin gamma-KTx 1.2 OS=Centruroides elegans GN=ERG1 PE=2 SV=1
7 : KGX18_CENEL 0.93 1.00 1 42 1 42 42 0 0 42 P0C893 Potassium channel toxin gamma-KTx 1.8 OS=Centruroides elegans PE=1 SV=1
8 : KGX13_CENGR 0.90 0.93 1 42 1 42 42 0 0 42 Q86QV3 Potassium channel toxin gamma-KTx 1.3 OS=Centruroides gracilis GN=ERG1 PE=2 SV=1
9 : KGX42_CENNO 0.88 1.00 1 41 1 41 41 0 0 43 Q86QV7 Potassium channel toxin gamma-KTx 4.2 OS=Centruroides noxius GN=ERG5 PE=2 SV=1
10 : KGX32_CENEL 0.85 0.93 1 41 1 41 41 0 0 43 Q86QV5 Potassium channel toxin gamma-KTx 3.2 OS=Centruroides elegans GN=ERG2 PE=2 SV=1
11 : KGX51_CENSC 0.85 0.93 1 41 1 41 41 0 0 47 Q86QU2 Potassium channel toxin gamma-KTx 5.1 OS=Centruroides sculpturatus GN=ERG5 PE=2 SV=1
12 : KGX33_CENSC 0.83 0.90 1 41 1 41 41 0 0 43 Q86QU5 Potassium channel toxin gamma-KTx 3.3 OS=Centruroides sculpturatus GN=ERG2 PE=2 SV=1
13 : KGX31_CENNO 0.78 0.93 1 41 1 41 41 0 0 43 P59939 Potassium channel toxin gamma-KTx 3.1 OS=Centruroides noxius GN=ERG2 PE=1 SV=1
14 : KGX34_CENGR 0.76 0.83 1 42 1 42 42 0 0 42 Q86QV2 Potassium channel toxin gamma-KTx 3.4 OS=Centruroides gracilis GN=ERG2 PE=2 SV=1
15 : KGX52_CENGR 0.76 0.88 1 42 1 42 42 0 0 47 Q86QV1 Potassium channel toxin gamma-KTx 5.2 OS=Centruroides gracilis GN=ERG3 PE=2 SV=1
16 : KGX44_CENEX 0.73 0.93 1 41 1 41 41 0 0 43 Q86QT9 Potassium channel toxin gamma-KTx 4.4 OS=Centruroides exilicauda GN=ERG3 PE=2 SV=1
17 : KGX45_CENEX 0.73 0.93 1 41 1 41 41 0 0 43 Q86QT8 Potassium channel toxin gamma-KTx 4.5 OS=Centruroides exilicauda GN=ERG4 PE=2 SV=1
18 : KGX49_CENSC 0.73 0.95 1 41 1 41 41 0 0 43 Q86QU4 Potassium channel toxin gamma-KTx 4.9 OS=Centruroides sculpturatus GN=ERG3 PE=2 SV=1
19 : KGX4A_CENSC 0.71 0.95 1 41 1 41 41 0 0 43 Q86QU3 Potassium channel toxin gamma-KTx 4.10 OS=Centruroides sculpturatus GN=ERG4 PE=2 SV=1
20 : KGX41_CENLL 0.68 0.93 1 41 1 41 41 0 0 43 Q86QU9 Potassium channel toxin gamma-KTx 4.1 OS=Centruroides limpidus limpidus GN=ERG2 PE=1 SV=1
21 : KGX46_CENLL 0.68 0.90 1 41 1 41 41 0 0 43 Q86QU8 Potassium channel toxin gamma-KTx 4.6 OS=Centruroides limpidus limpidus GN=ERG3 PE=2 SV=1
22 : KGX47_CENLL 0.68 0.93 1 41 1 41 41 0 0 43 Q86QU7 Potassium channel toxin gamma-KTx 4.7 OS=Centruroides limpidus limpidus GN=ERG4 PE=2 SV=1
23 : KGX4B_CENNO 0.68 0.93 1 41 1 41 41 0 0 43 Q86QV8 Potassium channel toxin gamma-KTx 4.11 OS=Centruroides noxius GN=ERG4 PE=2 SV=1
24 : KGX4D_CENNO 0.68 0.95 1 41 1 41 41 0 0 43 Q86QV9 Potassium channel toxin gamma-KTx 4.13 OS=Centruroides noxius GN=ERG3 PE=2 SV=1
25 : KGX43_CENEX 0.66 0.90 1 41 1 41 41 0 0 43 Q86QU0 Potassium channel toxin gamma-KTx 4.3 OS=Centruroides exilicauda PE=2 SV=1
26 : KGX48_CENEL 0.66 0.95 1 41 1 41 41 0 0 43 Q86QV4 Potassium channel toxin gamma-KTx 4.8 OS=Centruroides elegans GN=ERG3 PE=2 SV=1
27 : KGX4C_CENSC 0.63 0.95 1 41 1 41 41 0 0 43 P59940 Potassium channel toxin gamma-KTx 4.12 OS=Centruroides sculpturatus PE=1 SV=1
## ALIGNMENTS 1 - 27
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 172 28 7 DDDDDDDDDDDDGDDDDDDDDDDDDDE
2 2 A R > + 0 0 115 28 0 RRRRRRRRRRRRRRRRRRRRRRRRRRR
3 3 A D G >>>S+ 0 0 48 28 0 DDDDDDDDDDDDDDDDDDDDDDDDDDD
4 4 A S G 345S+ 0 0 59 28 0 SSSSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A a G <45S+ 0 0 15 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A V T <45S- 0 0 46 28 1 VVVVVVIVVVVVVVVVVVVVVVVVVVV
7 7 A D T <5S+ 0 0 59 28 7 DDDDDDDDDDDDNDDDDDDDDDDDDDE
8 8 A K S - 0 0 74 28 0 YYYYYYYYYYYYYYYYYYYYYYYYYYY
18 18 A Q H > S+ 0 0 160 28 74 QQQQQQQQQQGGSAGYYGGGGGGGGHG
19 19 A E H > S+ 0 0 80 28 32 EEEEEEEEEQQQQQQQQQQQQQQQQQQ
20 20 A c H > S+ 0 0 0 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
21 21 A Q H X S+ 0 0 68 28 54 QQQQQTQTQEEEETTDDDDDDDDDDDD
22 22 A D H X S+ 0 0 88 28 55 DDDDDDDDDIVVVADEEDEEKEEEEEE
23 23 A a H X S+ 0 0 33 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
24 24 A d H X>S+ 0 0 1 28 0 CCCCCCCCCCCCCCCCCCCCCCCCCCC
25 25 A K H <5S+ 0 0 107 28 0 KKKKKKKKKKKKKKKKKKKKKKKKKKK
26 26 A N H <5S+ 0 0 149 28 15 NKKKKKKKNKKKKKKKKKKKKKKKKKK
27 27 A A H <5S- 0 0 27 28 17 AAAAAYAYAAAAAAAAAAAAAAAAAAA
28 28 A G T <5S+ 0 0 59 28 0 GGGGGGGGGGGGGGGGGGGGGGGGGGG
29 29 A H S