Complet list of 1pt4 hssp file
Complete list of 1pt4.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PT4
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-06
HEADER ANTIBIOTIC 23-JUN-03 1PT4
COMPND MOL_ID: 1; MOLECULE: KALATA B2; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: OLDENLANDIA AFFINIS; ORGANISM_TAXID: 6
AUTHOR C.V.JENNINGS,M.A.ANDERSON,N.L.DALY,K.J.ROSENGREN,D.J.CRAIK
DBREF 1PT4 A 1 25 UNP P58454 KAB2_OLDAF 179 203
DBREF 1PT4 A 26 29 UNP P58454 KAB2_OLDAF 175 178
SEQLENGTH 29
NCHAIN 1 chain(s) in 1PT4 data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : KAB11_OLDAF 0.96 0.96 1 25 5 29 25 0 0 29 P85129 Kalata-B11 OS=Oldenlandia affinis PE=1 SV=1
2 : B6E621_OLDAF 0.93 1.00 1 29 71 99 29 0 0 210 B6E621 Kalata B2 protein OS=Oldenlandia affinis PE=4 SV=1
3 : KAB2_OLDAF 1PT4 0.93 1.00 1 29 71 99 29 0 0 210 P58454 Kalata-B2 OS=Oldenlandia affinis GN=OAK4 PE=1 SV=1
4 : KAB10_OLDAF 0.92 0.96 1 25 5 30 26 1 1 30 P85128 Kalata-B10 OS=Oldenlandia affinis PE=1 SV=1
5 : B6E620_OLDAF 0.90 0.97 1 28 71 99 29 1 1 155 B6E620 Kalata B6 and kalata B3 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
6 : KAB3_OLDAF 1WN8 0.90 0.97 1 28 71 99 29 1 1 158 P58455 Kalata-B3/B6 OS=Oldenlandia affinis GN=OAK2 PE=1 SV=1
7 : CYVA_VIOBI 0.88 0.96 1 25 5 29 25 0 0 29 P85239 Cyclotide vibi-A OS=Viola biflora PE=1 SV=1
8 : KAB15_OLDAF 0.88 0.96 1 25 5 29 25 0 0 29 P85133 Kalata-B15 OS=Oldenlandia affinis PE=1 SV=1
9 : KAB13_OLDAF 0.85 0.92 1 25 5 30 26 1 1 30 P85131 Kalata-B13 OS=Oldenlandia affinis PE=1 SV=1
10 : CYO12_VIOAR 0.84 0.96 1 25 5 29 25 0 0 29 P83835 Varv peptide E OS=Viola arvensis PE=1 SV=1
11 : CYO12_VIOOD 0.84 0.96 1 25 5 29 25 0 0 29 P83836 Cycloviolacin-O12 OS=Viola odorata PE=1 SV=1
12 : CYVB_VIOBI 0.84 0.96 1 25 5 29 25 0 0 29 P85240 Cyclotide vibi-B OS=Viola biflora PE=1 SV=1
13 : KAB4_OLDAF 1ZNU 0.84 0.96 1 25 5 29 25 0 0 29 P83938 Kalata-B4 OS=Oldenlandia affinis PE=1 SV=2
14 : KABS_OLDAF 0.84 0.96 1 25 5 29 25 0 0 29 P58458 Kalata-S OS=Oldenlandia affinis PE=1 SV=1
15 : VARA_VIOAR 0.84 0.96 1 25 5 29 25 0 0 29 P58446 Varv peptide A OS=Viola arvensis PE=1 SV=1
16 : VARA_VIOBI 0.84 0.96 1 25 5 29 25 0 0 29 P85525 Cyclotide varv-A OS=Viola biflora PE=1 SV=1
17 : VARC_VIOAR 0.84 0.96 1 25 5 29 25 0 0 29 P58448 Varv peptide C OS=Viola arvensis PE=1 SV=1
18 : D8WS37_OLDAF 0.83 0.93 1 28 66 94 29 1 1 153 D8WS37 Cyclotide Oak6 (Fragment) OS=Oldenlandia affinis GN=oak6 PE=2 SV=1
19 : B6E618_OLDAF 0.82 0.96 1 28 93 120 28 0 0 121 B6E618 Kalata B1 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
20 : D8WS41_OLDAF 0.82 0.96 1 28 75 102 28 0 0 106 D8WS41 Cyclotide Oak10 (Fragment) OS=Oldenlandia affinis GN=oak10 PE=2 SV=1
21 : KAB1_OLDAF 1ZNU 0.82 0.96 1 28 93 120 28 0 0 124 P56254 Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE=1 SV=3
22 : CYH3_VIOHE 0.81 0.88 1 25 5 30 26 1 1 30 P85232 Cycloviolacin-H3 OS=Viola hederacea PE=1 SV=1
23 : KAB14_OLDAF 0.81 0.92 1 25 5 30 26 1 1 30 P85132 Kalata-B14 OS=Oldenlandia affinis PE=1 SV=1
24 : VARB_VIOAR 0.81 0.92 1 25 5 30 26 1 1 30 P58447 Varv peptide B OS=Viola arvensis PE=1 SV=1
25 : VARG_VIOAR 0.81 0.92 1 25 5 30 26 1 1 30 P58452 Varv peptide G OS=Viola arvensis PE=1 SV=1
26 : VARH_VIOAR 0.81 0.92 1 25 5 30 26 1 1 30 P58453 Varv peptide H OS=Viola arvensis PE=1 SV=1
27 : CYO22_VIOOD 0.80 0.96 1 25 5 29 25 0 0 29 P85185 Cycloviolacin-O22 OS=Viola odorata PE=1 SV=1
28 : CYVD_VIOBI 0.80 0.92 1 25 5 29 25 0 0 29 P85242 Cyclotide vibi-D OS=Viola biflora PE=1 SV=1
29 : VARD_VIOAR 0.80 0.96 1 25 5 29 25 0 0 29 P58449 Varv peptide D OS=Viola arvensis PE=1 SV=1
30 : CYO23_VIOOD 0.78 0.89 1 25 5 31 27 1 2 31 P85186 Cycloviolacin-O23 OS=Viola odorata PE=1 SV=1
31 : CYO24_VIOOD 0.77 0.92 1 25 5 30 26 1 1 30 P85187 Cycloviolacin-O24 OS=Viola odorata PE=1 SV=1
32 : A5YRZ3_9ROSI 0.76 0.97 1 29 125 153 29 0 0 153 A5YRZ3 Cyclotide 6 OS=Viola baoshanensis PE=2 SV=1
33 : A5YRZ4_9ROSI 0.76 0.97 1 29 179 207 29 0 0 207 A5YRZ4 Cyclotide 7 OS=Viola baoshanensis PE=2 SV=1
34 : B5B3Z3_9ROSI 0.76 0.97 1 29 125 153 29 0 0 153 B5B3Z3 Cyclotide 6b OS=Viola baoshanensis PE=2 SV=1
35 : B5B3Z4_9ROSI 0.76 0.97 1 29 125 153 29 0 0 153 B5B3Z4 Cyclotide 6c OS=Viola baoshanensis PE=2 SV=1
36 : B5B3Z5_9ROSI 0.76 0.97 1 29 125 153 29 0 0 153 B5B3Z5 Cyclotide 6d OS=Viola baoshanensis PE=2 SV=1
37 : B5B3Z6_9ROSI 0.76 0.97 1 29 179 207 29 0 0 207 B5B3Z6 Cyclotide 7b OS=Viola baoshanensis PE=2 SV=1
38 : B5B3Z7_9ROSI 0.76 0.97 1 29 179 207 29 0 0 207 B5B3Z7 Cyclotide 7c OS=Viola baoshanensis PE=2 SV=1
39 : B6E615_VIOOD 0.76 0.97 1 29 179 207 29 0 0 207 B6E615 Cycloviolacin O8 OS=Viola odorata PE=4 SV=1
40 : VARA_VIOOD 1WN4 0.76 0.97 1 29 179 207 29 0 0 207 Q5USN7 Varv peptide A/Kalata-B1 OS=Viola odorata GN=Vok1 PE=1 SV=1
41 : K9Y572_9POAL 0.75 0.79 1 24 55 78 24 0 0 78 K9Y572 Panitide L6 OS=Steinchisma laxum PE=4 SV=1
42 : CYVC_VIOBI 0.72 0.88 1 25 5 29 25 0 0 29 P85241 Cyclotide vibi-C OS=Viola biflora PE=1 SV=1
43 : M9T7B1_VIOOD 0.72 0.93 1 29 74 102 29 0 0 102 M9T7B1 Cyclotide C (Fragment) OS=Viola odorata GN=vocC PE=2 SV=1
44 : VARF_VIOAR 2K7G 0.72 0.88 1 25 5 29 25 0 0 29 P58451 Varv peptide F OS=Viola arvensis PE=1 SV=1
45 : B6E619_OLDAF 0.71 0.82 1 28 80 107 28 0 0 107 B6E619 Kalata B7 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
46 : CYO16_VIOOD 0.71 0.79 1 24 4 27 24 0 0 29 P85179 Cycloviolacin-O16 OS=Viola odorata PE=1 SV=1
47 : I0B6F3_9GENT 0.71 0.79 1 27 46 73 28 1 1 78 I0B6F3 Cyclotide chassatide C4 OS=Chassalia chartacea PE=4 SV=1
48 : K9Y490_9POAL 0.71 0.71 1 24 55 78 24 0 0 78 K9Y490 Panitide L1 OS=Steinchisma laxum PE=4 SV=1
49 : KAB7_OLDAF 2M9O 0.71 0.82 1 28 80 107 28 0 0 111 P58457 Kalata-B7 OS=Oldenlandia affinis GN=OAK3 PE=1 SV=1
50 : Q30CA6_9ROSI 0.69 0.83 1 29 1 29 29 0 0 35 Q30CA6 Cyclotide B (Fragment) OS=Hybanthus monopetalus PE=2 SV=1
51 : CYO15_VIOOD 0.68 0.80 1 25 5 29 25 0 0 29 P85178 Cycloviolacin-O15 OS=Viola odorata PE=1 SV=1
52 : CYO21_VIOOD 0.68 0.88 1 25 5 29 25 0 0 29 P85184 Cycloviolacin-O21 OS=Viola odorata PE=1 SV=1
53 : A9P3R7_9ROSI 0.67 0.81 1 27 65 91 27 0 0 93 A9P3R7 Cyclotide protein Mra26 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
54 : K9Y385_9POAL 0.67 0.75 1 24 66 89 24 0 0 89 K9Y385 Panitide L4 OS=Steinchisma laxum PE=4 SV=1
55 : F8W671_CLITE2LAM 0.64 0.80 1 25 5 29 25 0 0 29 F8W671 Cyclotide Cter M OS=Clitoria ternatea PE=1 SV=1
56 : VODM_VIOOD 0.64 0.80 1 25 5 29 25 0 0 29 P83839 Vodo peptide M OS=Viola odorata PE=1 SV=1
57 : VODN_VIOOD 0.64 0.80 1 25 5 29 25 0 0 29 P83838 Vodo peptide N OS=Viola odorata PE=1 SV=1
58 : A9P3R3_9ROSI 0.63 0.85 1 27 66 92 27 0 0 94 A9P3R3 Cyclotide protein Mra25 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
59 : D2WPK8_9ROSI 0.63 0.81 1 27 74 100 27 0 0 102 D2WPK8 Cyclotide E (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
60 : K9Y2Z0_9POAL 0.62 0.62 1 24 56 79 24 0 0 79 K9Y2Z0 Panitide L2 OS=Steinchisma laxum PE=4 SV=1
61 : KAB9_OLDAF 0.62 0.73 1 25 6 31 26 1 1 31 P85127 Kalata-B9 OS=Oldenlandia affinis PE=1 SV=1
62 : CYCN_CLITE 0.60 0.76 1 25 5 29 25 0 0 29 P86900 Cyclotide cter-N OS=Clitoria ternatea PE=1 SV=1
63 : A9P3R4_9ROSI 0.59 0.85 1 27 65 91 27 0 0 93 A9P3R4 Cyclotide protein Mra24 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
64 : CYCM_CLITE 2LAM 0.59 0.78 1 27 29 55 27 0 0 127 P86899 Cyclotide cter-M OS=Clitoria ternatea PE=1 SV=1
65 : G1CWH1_CLITE 0.59 0.74 1 27 34 60 27 0 0 132 G1CWH1 Cyclotide cliotide T2 OS=Clitoria ternatea PE=2 SV=1
66 : G1CWH2_CLITE 0.59 0.78 1 27 29 55 27 0 0 127 G1CWH2 Cyclotide cliotide T3 OS=Clitoria ternatea PE=2 SV=1
67 : CYO14_VIOOD 2GJ0 0.58 0.81 1 25 6 31 26 1 1 31 P85177 Cycloviolacin-O14 OS=Viola odorata PE=1 SV=1
68 : KAB8_OLDAF 2B38 0.58 0.73 1 25 6 31 26 1 1 31 P85175 Kalata-B8 OS=Oldenlandia affinis PE=1 SV=1
69 : KAB12_OLDAF 2KVX 0.56 0.72 1 25 4 28 25 0 0 28 P85130 Kalata-B12 OS=Oldenlandia affinis PE=1 SV=1
70 : Q30CA3_9ROSI 0.55 0.76 1 28 1 29 29 1 1 30 Q30CA3 Cyclotide A (Fragment) OS=Hybanthus calycinus PE=2 SV=1
71 : M7ZIA4_TRIUA 0.54 0.73 1 25 60 85 26 1 1 90 M7ZIA4 Uncharacterized protein OS=Triticum urartu GN=TRIUR3_26311 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 18 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A G + 0 0 75 72 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
3 3 A E - 0 0 49 72 1 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDE
4 4 A T B -A 21 0A 75 72 15 TTTTTTTSTTTTTTTTTTTTTTSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTSTTTTTTSTSTTT
5 5 A b > + 0 0 0 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A F T 3 S+ 0 0 145 72 63 FFFFFFFFFVVFVVVVVFVVVFFFFFVFVFFVVVVVVVVVVAVTTFFVTVFVVLTFTTVVVVLTVTFLFV
7 7 A G T 3 S- 0 0 69 72 82 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGLFGLLTTLLTTTGLLTLLKLLLLLQLKLVV
8 8 A G S < S+ 0 0 48 72 14 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGLD
9 9 A T - 0 0 103 72 45 TTTTTTTSTTTTTTTTTTTTTTTTTTTRSTTTTTTTTTTTTSTTTKITTTKSKTTKKEKRTTTTETKTGt
10 10 A c - 0 0 30 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
11 11 A N S S+ 0 0 144 72 64 NNNNNNNYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYYNYYYFYYYYYYYYYYYNYYYYYYYYYNY
12 12 A T S > S- 0 0 38 72 14 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVTTTTTTTTVTVTTDT
13 13 A P T 3 S+ 0 0 106 72 27 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAQPAPQPPPPPPVAPPPPPPPPPPTSK
14 14 A G T 3 S+ 0 0 64 72 20 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDQGGGNGDGDGDGGSK
15 15 A a < - 0 0 23 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A S E -B 23 0A 75 72 52 SSSSSSSSASSTTSSSSATTTIASSSTTSTTSSSSSSSSSSSSSTSSRTASTTRSSSTVRTSTSSSSTSS
17 17 A b E -B 22 0A 50 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A T E > -B 21 0A 74 72 58 TTTsssSTdSSSSSSSSdSSSddddeSSSddSSSSSSSSSASSSSSnQSDSSTTSSSSSQnTKSDSsnNA
19 19 A W T 3 S+ 0 0 189 72 25 DWWwwwYWwWWYWWWWWwWWWwwwwwWYWwwWWWWWWWWWYWWWWYwYWWYWWAWWWWWYyARWWWyyYW
20 20 A P T 3 S+ 0 0 52 72 14 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPGPPPPPPRLPPPPPRPP
21 21 A I E < S-AB 4 18A 75 72 19 IIIIIIIIVVVIVVVVVVVVVVVMVVVIVIVVVVVVVVVVIVVVIITIIVIVVIIVVIVIVVVIIILVIV
22 22 A c E - B 0 17A 1 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A T E - B 0 16A 9 72 66 TTTTTTTTTTTTTTTTTTTTTTTSSSTTTTTTTTTTTTTTVTITKKTVKKKTYLMTYTKVTLYMKMATVM
24 24 A R B > S-C 27 0B 103 72 25 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRHHRRRRRRRRRRRRRRKRRRRKRRKKRRKKRKKKKKKKKKR
25 25 A D T 3 S- 0 0 158 67 19 DDDDNNNDDNNNDNNNNNNNNNDNNNNNNNNNNNNNNNNN NNNN N NDNNN NNNNN DNNNNNNDDN
26 26 A G T 3 S+ 0 0 53 31 60 SS GG GGGG SSSSSSSAA S G G GA S SS SHHH S
27 27 A L B < -C 24 0B 108 31 13 LL LL LLLL LLLLLLLLL L L L LL L LL LIII L
28 28 A P 0 0 81 23 43 PP PP PPPP AAAAAAAAA A P PP A
29 29 A V 0 0 105 14 34 MM MMMMMMMMM M I
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A a 0 0 18 72 0 C
2 2 A G + 0 0 75 72 0 G
3 3 A E - 0 0 49 72 1 E
4 4 A T B -A 21 0A 75 72 15 T
5 5 A b > + 0 0 0 72 0 C
6 6 A F T 3 S+ 0 0 145 72 63 A
7 7 A G T 3 S- 0 0 69 72 82 L
8 8 A G S < S+ 0 0 48 72 14 S
9 9 A T - 0 0 103 72 45 g
10 10 A c - 0 0 30 72 0 c
11 11 A N S S+ 0 0 144 72 64 N
12 12 A T S > S- 0 0 38 72 14 T
13 13 A P T 3 S+ 0 0 106 72 27 G
14 14 A G T 3 S+ 0 0 64 72 20 G
15 15 A a < - 0 0 23 72 0 C
16 16 A S E -B 23 0A 75 72 52 Q
17 17 A b E -B 22 0A 50 72 0 C
18 18 A T E > -B 21 0A 74 72 58 A
19 19 A W T 3 S+ 0 0 189 72 25 W
20 20 A P T 3 S+ 0 0 52 72 14 P
21 21 A I E < S-AB 4 18A 75 72 19 V
22 22 A c E - B 0 17A 1 72 0 C
23 23 A T E - B 0 16A 9 72 66 I
24 24 A R B > S-C 27 0B 103 72 25 K
25 25 A D T 3 S- 0 0 158 67 19 N
26 26 A G T 3 S+ 0 0 53 31 60
27 27 A L B < -C 24 0B 108 31 13
28 28 A P 0 0 81 23 43
29 29 A V 0 0 105 14 34
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 1 72 0 0 0.073 2 0.98
4 4 A 0 0 0 0 0 0 0 0 0 0 8 92 0 0 0 0 0 0 0 0 72 0 0 0.287 9 0.84
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
6 6 A 46 4 0 0 36 0 0 0 3 0 0 11 0 0 0 0 0 0 0 0 72 0 0 1.201 40 0.36
7 7 A 3 24 0 0 1 0 0 60 0 0 0 8 0 0 0 3 1 0 0 0 72 0 0 1.174 39 0.17
8 8 A 0 1 0 0 0 0 0 94 0 0 1 0 0 0 0 0 0 0 1 1 72 0 0 0.292 9 0.86
9 9 A 0 0 1 0 0 0 0 3 0 0 6 75 0 0 3 10 0 3 0 0 72 0 2 0.961 32 0.55
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
11 11 A 0 0 0 0 1 0 38 0 0 0 0 0 0 0 0 0 0 0 61 0 72 0 0 0.728 24 0.36
12 12 A 4 0 0 0 0 0 0 0 0 0 0 94 0 0 0 0 0 0 0 1 72 0 0 0.246 8 0.86
13 13 A 1 0 0 0 0 0 0 1 4 86 1 1 0 0 0 1 3 0 0 0 72 0 0 0.658 21 0.73
14 14 A 0 0 0 0 0 0 0 89 0 0 1 0 0 0 0 1 1 0 1 6 72 0 0 0.503 16 0.80
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
16 16 A 1 0 1 0 0 0 0 0 6 0 63 24 0 0 4 0 1 0 0 0 72 0 0 1.106 36 0.48
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 4 0 60 11 0 0 0 1 3 1 6 14 72 0 16 1.337 44 0.42
19 19 A 0 0 0 0 0 78 17 0 3 0 0 0 0 0 1 0 0 0 0 1 72 0 0 0.712 23 0.74
20 20 A 0 1 0 0 0 0 0 1 0 94 0 0 0 0 3 0 0 0 0 0 72 0 0 0.272 9 0.86
21 21 A 60 1 36 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 72 0 0 0.854 28 0.80
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
23 23 A 6 3 3 6 0 0 4 0 1 0 4 64 0 0 0 10 0 0 0 0 72 0 0 1.357 45 0.33
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 75 22 0 0 0 0 72 0 0 0.650 21 0.74
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81 19 67 0 0 0.492 16 0.80
26 26 A 0 0 0 0 0 0 0 32 10 0 48 0 0 10 0 0 0 0 0 0 31 0 0 1.168 38 0.40
27 27 A 0 90 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.318 10 0.87
28 28 A 0 0 0 0 0 0 0 0 48 52 0 0 0 0 0 0 0 0 0 0 23 0 0 0.692 23 0.57
29 29 A 7 0 7 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0.509 16 0.65
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
4 19 23 1 sSw
5 19 89 1 sSw
6 19 89 1 sSw
9 19 23 1 dPw
18 19 84 1 dPw
22 19 23 1 dPw
23 19 23 1 dPw
24 19 23 1 dPw
25 19 23 1 dPw
26 19 23 1 eTw
30 19 23 2 dSSw
31 19 23 1 dPw
47 19 64 1 nPw
61 19 24 1 nTy
67 19 24 1 sKy
68 19 24 1 nKy
70 10 10 1 tRc
71 10 69 1 gGc
//