Complet list of 1plp hssp file
Complete list of 1plp.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PLP
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-05
HEADER MEMBRANE PROTEIN 01-MAY-95 1PLP
COMPND MOL_ID: 1; MOLECULE: PHOSPHOLAMBAN; CHAIN: A; SYNONYM: PLB(1-25); ENGI
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR R.J.MORTISHIRE-SMITH,S.M.PITZENBERGER,C.J.BURKE, C.R.MIDDAUGH,V.M.GARS
DBREF 1PLP A 1 24 UNP P26678 PPLA_HUMAN 1 24
SEQLENGTH 25
NCHAIN 1 chain(s) in 1PLP data set
NALIGN 37
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : F2Z4I4_BOVIN 1.00 1.00 1 24 1 24 24 0 0 52 F2Z4I4 Cardiac phospholamban OS=Bos taurus GN=PLN PE=4 SV=1
2 : PPLA_BOVIN 1.00 1.00 1 24 1 24 24 0 0 52 A4IFH6 Cardiac phospholamban OS=Bos taurus GN=PLN PE=1 SV=1
3 : PPLA_CANFA 1.00 1.00 1 24 1 24 24 0 0 52 P61012 Cardiac phospholamban OS=Canis familiaris GN=PLN PE=1 SV=1
4 : PPLA_PIG 1.00 1.00 1 24 1 24 24 0 0 52 P61013 Cardiac phospholamban OS=Sus scrofa GN=PLN PE=1 SV=1
5 : W5QFE3_SHEEP 1.00 1.00 1 24 1 24 24 0 0 52 W5QFE3 Uncharacterized protein OS=Ovis aries GN=PLN PE=4 SV=1
6 : D2H9K8_AILME 0.96 1.00 1 24 1 24 24 0 0 52 D2H9K8 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100465655 PE=4 SV=1
7 : F6TR48_CALJA 0.96 1.00 1 24 1 24 24 0 0 52 F6TR48 Cardiac phospholamban OS=Callithrix jacchus GN=PLN PE=4 SV=1
8 : F6V8P7_MONDO 0.96 1.00 1 24 1 24 24 0 0 52 F6V8P7 Uncharacterized protein OS=Monodelphis domestica GN=PLN PE=4 SV=1
9 : F6YX80_HORSE 0.96 1.00 1 24 1 24 24 0 0 52 F6YX80 Uncharacterized protein OS=Equus caballus GN=PLN PE=4 SV=1
10 : F6ZMW1_MACMU 0.96 1.00 1 24 1 24 24 0 0 52 F6ZMW1 Cardiac phospholamban OS=Macaca mulatta GN=PLN PE=4 SV=1
11 : G1PX50_MYOLU 0.96 1.00 1 24 1 24 24 0 0 52 G1PX50 Uncharacterized protein OS=Myotis lucifugus GN=PLN PE=4 SV=1
12 : G1T692_RABIT 0.96 1.00 1 24 2 25 24 0 0 53 G1T692 Cardiac phospholamban (Fragment) OS=Oryctolagus cuniculus GN=PLN PE=4 SV=1
13 : H2PQL6_PONAB 0.96 1.00 1 24 1 24 24 0 0 52 H2PQL6 Uncharacterized protein OS=Pongo abelii GN=PLN PE=4 SV=1
14 : I3MXF7_SPETR 0.96 1.00 1 24 1 24 24 0 0 52 I3MXF7 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=PLN PE=4 SV=1
15 : M3W4A6_FELCA 0.96 1.00 1 24 1 24 24 0 0 52 M3W4A6 Uncharacterized protein OS=Felis catus GN=PLN PE=4 SV=1
16 : PPLA_HUMAN 0.96 1.00 1 24 1 24 24 0 0 52 P26678 Cardiac phospholamban OS=Homo sapiens GN=PLN PE=1 SV=1
17 : PPLA_MOUSE 0.96 1.00 1 24 1 24 24 0 0 52 P61014 Cardiac phospholamban OS=Mus musculus GN=Pln PE=1 SV=1
18 : PPLA_RABIT 0.96 1.00 1 24 1 24 24 0 0 52 P61015 Cardiac phospholamban OS=Oryctolagus cuniculus GN=PLN PE=1 SV=1
19 : PPLA_RAT 0.96 1.00 1 24 1 24 24 0 0 52 P61016 Cardiac phospholamban OS=Rattus norvegicus GN=Pln PE=1 SV=1
20 : Q5R352_HUMAN 0.96 1.00 1 24 1 24 24 0 0 52 Q5R352 Phospholamban OS=Homo sapiens GN=PLN PE=2 SV=1
21 : G1RT09_NOMLE 0.92 0.96 1 24 1 24 24 0 0 52 G1RT09 Uncharacterized protein OS=Nomascus leucogenys GN=PLN PE=4 SV=1
22 : G3QT72_GORGO 0.92 0.96 1 24 1 24 24 0 0 52 G3QT72 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101139566 PE=4 SV=1
23 : G5C1T7_HETGA 0.92 1.00 1 24 61 84 24 0 0 112 G5C1T7 Cardiac phospholamban OS=Heterocephalus glaber GN=GW7_15394 PE=4 SV=1
24 : H0VUR9_CAVPO 0.92 0.96 1 24 1 24 24 0 0 52 H0VUR9 Uncharacterized protein OS=Cavia porcellus GN=PLN PE=4 SV=1
25 : H0WZU7_OTOGA 0.92 0.96 1 24 1 24 24 0 0 52 H0WZU7 Uncharacterized protein OS=Otolemur garnettii GN=PLN PE=4 SV=1
26 : H2RCD8_PANTR 0.92 0.96 1 24 1 24 24 0 0 52 H2RCD8 Phospholamban OS=Pan troglodytes GN=PLN PE=4 SV=1
27 : G3TDZ2_LOXAF 0.88 0.96 1 24 1 24 24 0 0 52 G3TDZ2 Uncharacterized protein OS=Loxodonta africana GN=PLN PE=4 SV=1
28 : I6WN57_TURTR 0.88 1.00 1 24 1 24 24 0 0 52 I6WN57 Phospholamban OS=Tursiops truncatus GN=PLN PE=4 SV=1
29 : F6YC22_ORNAN 0.79 0.88 1 24 1 24 24 0 0 52 F6YC22 Uncharacterized protein OS=Ornithorhynchus anatinus GN=PLN PE=4 SV=1
30 : E7F215_DANRE 0.75 0.96 1 24 1 24 24 0 0 52 E7F215 Uncharacterized protein OS=Danio rerio GN=si:ch211-260o22.1 PE=4 SV=1
31 : G1NKV9_MELGA 0.75 0.92 1 24 1 24 24 0 0 52 G1NKV9 Uncharacterized protein OS=Meleagris gallopavo GN=PLN PE=4 SV=1
32 : R4GK80_CHICK 0.75 0.92 1 24 1 24 24 0 0 52 R4GK80 Cardiac phospholamban OS=Gallus gallus GN=PLN PE=4 SV=1
33 : U3I3G3_ANAPL 0.75 0.92 1 24 1 24 24 0 0 52 U3I3G3 Uncharacterized protein OS=Anas platyrhynchos GN=PLN PE=4 SV=1
34 : G1KUA4_ANOCA 0.71 0.92 1 24 1 24 24 0 0 52 G1KUA4 Uncharacterized protein OS=Anolis carolinensis GN=PLN PE=4 SV=1
35 : H0ZNR5_TAEGU 0.71 0.88 1 24 1 24 24 0 0 52 H0ZNR5 Uncharacterized protein OS=Taeniopygia guttata GN=PLN PE=4 SV=1
36 : PPLA_CHICK 0.71 0.92 1 24 1 24 24 0 0 52 P26677 Cardiac phospholamban OS=Gallus gallus GN=PLN PE=2 SV=1
37 : U3KLJ5_FICAL 0.71 0.88 1 24 1 24 24 0 0 52 U3KLJ5 Uncharacterized protein OS=Ficedula albicollis GN=PLN PE=4 SV=1
## ALIGNMENTS 1 - 37
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M > 0 0 157 38 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM
2 2 A D T 4 + 0 0 137 38 12 DDDDDDEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEE
3 3 A K T > S+ 0 0 160 38 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
4 4 A V H > S+ 0 0 92 38 0 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVV
5 5 A Q H X S+ 0 0 111 38 0 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
6 6 A Y H > S+ 0 0 175 38 38 YYYYYYYYYYYYYYYYYYYYHHYHYHHYHHYYYYHYH
7 7 A L H X S+ 0 0 122 38 21 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLMIIIMMIM
8 8 A T H X S+ 0 0 91 38 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9 9 A R H X S+ 0 0 174 38 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
10 10 A S H X S+ 0 0 22 38 7 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSS
11 11 A A H X S+ 0 0 59 38 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12 12 A I H < S+ 0 0 90 38 31 IIIIIIIIIIIIIIIIIIIIIIIIIIIILILLLLLLL
13 13 A R H >< S+ 0 0 73 38 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
14 14 A R H 3< S+ 0 0 178 38 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
15 15 A A T 3< S+ 0 0 77 38 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16 16 A S S < S+ 0 0 62 38 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
17 17 A T + 0 0 46 38 14 TTTTTTTTTTTTTTTTTTTTTTATNTTTNTTTTTTTT
18 18 A I S S+ 0 0 134 38 10 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIMIIIIILI
19 19 A E S S+ 0 0 194 38 2 EEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEE
20 20 A M S S- 0 0 127 38 42 MMMMMMMMMMMMMMMMMMMMMMMMMMVVMVVVVVVVV
21 21 A P + 0 0 104 38 62 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPNNNNNNN
22 22 A Q + 0 0 82 38 53 QQQQQQQQQQQQQQQQQQQQQQQQQQQQPQPPPPPPP
23 23 A Q S S- 0 0 166 38 7 QQQQQHQQQQQQQQQQQQQQQQQQQQQHQQQQQQQQQ
24 24 A A 0 0 121 38 7 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA
25 25 A C 0 0 162 1 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 79 0 21 38 0 0 0.515 17 0.87
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 38 0 0 0.000 0 1.00
4 4 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 38 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 76 0 0 0 0 0 0 24 0 0 0 0 0 0 38 0 0 0.547 18 0.62
7 7 A 0 79 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.661 22 0.78
8 8 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 38 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 3 0 97 0 0 0 0 0 0 0 0 0 38 0 0 0.122 4 0.93
11 11 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
12 12 A 0 21 79 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.515 17 0.69
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 38 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 38 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
17 17 A 0 0 0 0 0 0 0 0 3 0 0 92 0 0 0 0 0 0 5 0 38 0 0 0.326 10 0.86
18 18 A 0 3 95 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.243 8 0.90
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 3 38 0 0 0.122 4 0.97
20 20 A 26 0 0 74 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.576 19 0.57
21 21 A 0 0 0 0 0 0 0 0 0 82 0 0 0 0 0 0 0 0 18 0 38 0 0 0.478 15 0.38
22 22 A 0 0 0 0 0 0 0 0 0 21 0 0 0 0 0 0 79 0 0 0 38 0 0 0.515 17 0.47
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 95 0 0 0 38 0 0 0.206 6 0.92
24 24 A 0 0 0 0 0 0 0 0 97 0 0 3 0 0 0 0 0 0 0 0 38 0 0 0.122 4 0.92
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 1 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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