Complet list of 1pa4 hssp file
Complete list of 1pa4.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1PA4
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-06
HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAY-03 1PA4
COMPND MOL_ID: 1; MOLECULE: PROBABLE RIBOSOME-BINDING FACTOR A; CHAIN: A; ENG
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: MYCOPLASMA PNEUMONIAE; ORGANISM_TAXID:
AUTHOR S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER,BERKELEY STRUCTURAL GEN
DBREF 1PA4 A 1 116 UNP P75589 RBFA_MYCPN 1 116
SEQLENGTH 96
NCHAIN 1 chain(s) in 1PA4 data set
NALIGN 41
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : E1QBS4_MYCPB 1.00 1.00 1 96 6 101 96 0 0 116 E1QBS4 Ribosome-binding factor A OS=Mycoplasma pneumoniae (strain ATCC 15531 / NBRC 14401 / NCTC 10119 / FH) GN=rbfA PE=3 SV=1
2 : H0PPZ4_MYCPM 1.00 1.00 1 96 6 101 96 0 0 116 H0PPZ4 Ribosome-binding factor A OS=Mycoplasma pneumoniae 309 GN=rbfA PE=3 SV=1
3 : M1GET2_MYCPM 1.00 1.00 1 96 6 101 96 0 0 116 M1GET2 Ribosome-binding factor A OS=Mycoplasma pneumoniae M129-B7 GN=rbfA PE=3 SV=1
4 : RBFA_MYCPN 1PA4 1.00 1.00 1 96 6 101 96 0 0 116 P75589 Ribosome-binding factor A OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=rbfA PE=1 SV=1
5 : J3UCQ4_MYCGT 0.69 0.90 1 96 6 101 96 0 0 112 J3UCQ4 Ribosome-binding factor A OS=Mycoplasma genitalium M6282 GN=rbfA PE=3 SV=1
6 : J3WHW2_MYCGT 0.69 0.90 1 96 6 101 96 0 0 112 J3WHW2 Ribosome-binding factor A OS=Mycoplasma genitalium M2321 GN=rbfA PE=3 SV=1
7 : J3WL16_MYCGT 0.69 0.90 1 96 6 101 96 0 0 112 J3WL16 Ribosome-binding factor A OS=Mycoplasma genitalium M6320 GN=rbfA PE=3 SV=1
8 : J7HI75_MYCGT 0.69 0.90 1 96 6 101 96 0 0 112 J7HI75 Ribosome-binding factor A OS=Mycoplasma genitalium M2288 GN=rbfA PE=3 SV=1
9 : RBFA_MYCGE 0.69 0.90 1 96 6 101 96 0 0 112 P47389 Ribosome-binding factor A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=rbfA PE=3 SV=1
10 : RBFA_MYCPE 0.38 0.61 2 94 10 102 93 0 0 116 Q8EWT9 Ribosome-binding factor A OS=Mycoplasma penetrans (strain HF-2) GN=rbfA PE=3 SV=1
11 : G4ELK4_MYCIO 0.37 0.67 2 94 9 101 93 0 0 115 G4ELK4 Ribosome-binding factor A OS=Mycoplasma iowae 695 GN=rbfA PE=3 SV=1
12 : R6XYE7_9CLOT 0.35 0.60 2 93 6 98 93 1 1 114 R6XYE7 Ribosome-binding factor A OS=Clostridium sp. CAG:433 GN=rbfA PE=3 SV=1
13 : V5W1A1_MYCGL 0.35 0.65 3 95 8 100 93 0 0 119 V5W1A1 Ribosome-binding factor A OS=Mycoplasma gallisepticum S6 GN=rbfA PE=3 SV=1
14 : B1RV87_UREPR 0.34 0.60 3 93 9 99 91 0 0 116 B1RV87 Ribosome-binding factor A OS=Ureaplasma parvum serovar 14 str. ATCC 33697 GN=rbfA PE=3 SV=1
15 : B1RWM1_UREPR 0.34 0.60 3 93 9 99 91 0 0 116 B1RWM1 Ribosome-binding factor A OS=Ureaplasma parvum serovar 1 str. ATCC 27813 GN=rbfA PE=3 SV=1
16 : B1RYR6_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B1RYR6 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 13 str. ATCC 33698 GN=rbfA PE=3 SV=1
17 : B2D920_UREPR 0.34 0.60 3 93 9 99 91 0 0 116 B2D920 Ribosome-binding factor A OS=Ureaplasma parvum serovar 6 str. ATCC 27818 GN=rbfA PE=3 SV=1
18 : B2DB91_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B2DB91 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 5 str. ATCC 27817 GN=rbfA PE=3 SV=1
19 : B2NET8_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B2NET8 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 7 str. ATCC 27819 GN=rbfA PE=3 SV=1
20 : B2NGX7_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B2NGX7 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 11 str. ATCC 33695 GN=rbfA PE=3 SV=1
21 : B3XVK1_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B3XVK1 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 12 str. ATCC 33696 GN=rbfA PE=3 SV=1
22 : B5BNC3_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B5BNC3 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 4 str. ATCC 27816 GN=rbfA PE=3 SV=1
23 : B9ZXZ9_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 B9ZXZ9 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 8 str. ATCC 27618 GN=rbfA PE=3 SV=1
24 : C0AFR0_UREUR 0.34 0.60 3 93 9 99 91 0 0 116 C0AFR0 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 2 str. ATCC 27814 GN=rbfA PE=3 SV=1
25 : D3FFX1_MYCGH 0.34 0.65 3 95 8 100 93 0 0 119 D3FFX1 Ribosome-binding factor A OS=Mycoplasma gallisepticum (strain R(high / passage 156)) GN=rbfA PE=3 SV=1
26 : D3FJK5_MYCGF 0.34 0.63 3 95 8 100 93 0 0 119 D3FJK5 Ribosome-binding factor A OS=Mycoplasma gallisepticum (strain F) GN=rbfA PE=3 SV=1
27 : J3TMY8_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3TMY8 Ribosome-binding factor A OS=Mycoplasma gallisepticum NC95_13295-2-2P GN=rbfA PE=3 SV=1
28 : J3TPZ6_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3TPZ6 Ribosome-binding factor A OS=Mycoplasma gallisepticum NY01_2001.047-5-1P GN=rbfA PE=3 SV=1
29 : J3TQV5_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3TQV5 Ribosome-binding factor A OS=Mycoplasma gallisepticum WI01_2001.043-13-2P GN=rbfA PE=3 SV=1
30 : J3TT47_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3TT47 Ribosome-binding factor A OS=Mycoplasma gallisepticum CA06_2006.052-5-2P GN=rbfA PE=3 SV=1
31 : J3VI30_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3VI30 Ribosome-binding factor A OS=Mycoplasma gallisepticum NC06_2006.080-5-2P GN=rbfA PE=3 SV=1
32 : J3Y9M6_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3Y9M6 Ribosome-binding factor A OS=Mycoplasma gallisepticum VA94_7994-1-7P GN=rbfA PE=3 SV=1
33 : J3YLG7_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3YLG7 Ribosome-binding factor A OS=Mycoplasma gallisepticum NC08_2008.031-4-3P GN=rbfA PE=3 SV=1
34 : J3YPR6_MYCGL 0.34 0.63 3 95 8 100 93 0 0 119 J3YPR6 Ribosome-binding factor A OS=Mycoplasma gallisepticum NC96_1596-4-2P GN=rbfA PE=3 SV=1
35 : RBFA_MYCGA 0.34 0.65 3 95 8 100 93 0 0 119 Q7NBZ3 Ribosome-binding factor A OS=Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2)) GN=rbfA PE=3 SV=2
36 : RBFA_UREP2 0.34 0.60 3 93 9 99 91 0 0 116 B1AIV9 Ribosome-binding factor A OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rbfA PE=3 SV=1
37 : RBFA_UREPA 0.34 0.60 3 93 9 99 91 0 0 116 Q9PQH0 Ribosome-binding factor A OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) GN=rbfA PE=3 SV=1
38 : RBFA_UREU1 0.34 0.60 3 93 9 99 91 0 0 116 B5ZBD0 Ribosome-binding factor A OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rbfA PE=3 SV=1
39 : F9UKN9_9MOLU 0.32 0.52 16 96 21 99 81 1 2 112 F9UKN9 Ribosome-binding factor A OS=Mycoplasma columbinum SF7 GN=rbfA PE=3 SV=1
40 : R5J940_9CLOT 0.31 0.57 2 96 6 101 96 1 1 114 R5J940 Ribosome-binding factor A OS=Clostridium sp. CAG:1193 GN=rbfA PE=3 SV=1
41 : D5E5T7_MYCCM 0.30 0.58 2 93 7 96 92 1 2 112 D5E5T7 Ribosome-binding factor A OS=Mycoplasma crocodyli (strain ATCC 51981 / MP145) GN=rbfA PE=3 SV=1
## ALIGNMENTS 1 - 41
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 6 A K 0 0 219 10 0 KKKKKKKKK
2 7 A E > + 0 0 109 15 38 EEEEQQQQQEEE EN
3 8 A R H >> S- 0 0 218 41 3 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR KR
4 9 A L H 3> S+ 0 0 91 41 29 LLLLIIIIIYLLLLLLLLLLLLLLLLLLLLLLLLLLLL YK
5 10 A E H >> S+ 0 0 67 41 10 EEEEEEEEEEEAEEEEEEEEEEEEEEEEEEEEEEEEEE AE
6 11 A N H < S+ 0 0 10 42 32 VVVVIIIIIIILILLLLLLLLLLLIIIIIIIIIIILLLILI
17 22 A I T 3< S- 0 0 91 42 88 IIIIIIIIITVMSAAAAAAAAAAASSSSSSSSSSSAAALYS
18 23 A H T 34 S+ 0 0 183 42 73 HHHHNNNNNTRTTNNNNNNNNNNNTTTTTTTTTTTNNNYSN
19 24 A E << + 0 0 78 42 10 EEEEEEEEELEEEEEEEEEEEEEEEEEEEEEEEEEEEEDED
20 25 A I S S- 0 0 10 42 1 IIIIIIIIIVIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
21 26 A Y S S+ 0 0 192 42 66 YYYYYYYYYYYKNNNNNNNNNNNNNNNNNNNNNNNNNNNHK
22 27 A N S S- 0 0 133 42 33 NNNNDDDDDDDDNDDDDDDDDDDDNNNNNNNNNNNDDDNDN
23 28 A E S S+ 0 0 110 42 83 EEEEPPPPPDDESKKKKKKKKKKKSSSSSSSSSSSKKKAEV
24 29 A T >> + 0 0 22 42 70 TTTTVVVVVLLDLIIIIIIIIIIILLLLLLLLLLLIIIDDN
25 30 A V H >> S+ 0 0 6 42 62 VVVVVVVVVIIIIAAAAAAAAAAAIIIIIIIIIIIAAAVIV
26 31 A K H 34 S+ 0 0 104 42 20 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKIII
27 32 A T H <4 S+ 0 0 38 42 83 TTTTLLLLLQKFTLLLLLLLLLLLTTTTTTTTTTTLLLNGD
28 33 A G H << - 0 0 0 42 63 GGGGGGGGGAAVSAAAAAAAAAAASSSSSSSSSSSAAAPTP
29 34 A H < - 0 0 150 42 97 HHHHHHHHHTTTVRRRRRRRRRRRVVVVVVVVVVVRRRTTV
30 35 A V - 0 0 39 42 23 VVVVVVVVVVIIIVVVVVVVVVVVIIIIIIIIIIIVVVVAL
31 36 A T S S+ 0 0 99 42 41 TTTTSSSSSHVTTTTTTTTTTTTTTTTTTTTTTTTTTTMTM
32 37 A H + 0 0 96 42 71 HHHHHHHHHYDHAAAAAAAAAAAAAAAAAAAAAAAAAADYD
33 38 A V - 0 0 7 42 21 VVVVVVVVVVVLIVVVVVVVVVVVIIIIIIIIIIIVVVCVV
34 39 A K E -A 43 0A 109 42 36 KKKKKKKKKTRDKRRRRRRRRRRRKKKKKKKKKKKRRRKKK
35 40 A L E -A 42 0A 28 42 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
36 41 A S E >>S-A 41 0A 53 42 9 SSSSSSSSSSTSSSSSSSSSSSSSSSSSSSSSSSSSSSSAS
37 42 A D T 45S- 0 0 140 42 56 DDDDAAAAAKNSDNNNNNNNNNNNDDDDDDDDDDDNNNNDA
38 43 A D T 45S- 0 0 85 42 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
39 44 A L T 45S+ 0 0 32 42 75 LLLLFFFFFKKLKLLLLLLLLLLLKKKKKKKKKKKLLLLLL
40 45 A L T <5S+ 0 0 49 42 59 LLLLFFFFFSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
41 46 A H E < -A 36 0A 68 42 74 HHHHHHHHHIIYVVVVVVVVVVVVVVVVVVVVVVVVVVHYH
42 47 A V E -A 35 0A 3 42 30 VVVVAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVAC
43 48 A T E -Ab 34 85A 39 42 49 TTTTVVVVVKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
44 49 A V E - b 0 86A 6 42 15 VVVVVVVVVVIVIIIIIIIIIIIIIIIIIIIIIIIIIIVIV
45 50 A Y - 0 0 39 42 3 YYYYYYYYYYYYYFFFFFFFFFFFYYYYYYYYYYYFFFYYY
46 51 A L - 0 0 2 42 43 LLLLLLLLLIICILLLLLLLLLLLIIIIIIIIIIILLLVCV
47 52 A D + 0 0 72 42 27 DDDDDDDDDSSTDDDDDDDDDDDDDDDDDDDDDDDDDDTSN
48 53 A C - 0 0 7 41 60 CCCCCCCCCCCVCAAAAAAAAAAACCCCCCCCCCCAAA.VF
49 54 A Y S S- 0 0 161 41 83 YYYYYYYYYYYLLHHHHHHHHHHHLLLLLLLLLLLHHH.FT
50 55 A N S S- 0 0 137 42 97 NNNNDDDDDDPNIKKKKKKKKKKKIIIIIIIIIIIKKKFNS
51 56 A R S S+ 0 0 124 42 63 RRRRRRRRRKKDPRRRRRRRRRRRPPPPPPPPPPPRRREIH
52 57 A E S S+ 0 0 116 42 61 EEEESSSSSTEENEEEEEEEEEEENNNNNNNNNNNEEEADK
53 58 A Q S >> S+ 0 0 51 42 85 QQQQQQQQQILNNSSSSSSSSSSSNNNNNNNNNNNSSSRKE
54 59 A I H 3>>S+ 0 0 8 41 56 IIIIIIIIIITRIMMMMMMMMMMMIIIIIIIIIIIMMMSK.
55 60 A D H 3>5S+ 0 0 127 41 84 DDDDQQQQQDDDALLPLPPPPPPPAAAAAAAAAAALLPLD.
56 61 A R H <>5S+ 0 0 155 42 38 RRRRTTTTTKAKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
57 62 A V H >X5S+ 0 0 0 42 61 VVVVVVVVVIVCTVVVVVVVVVVVTTTTTTTTTTTVVVGAG
58 63 A V H 3X5S+ 0 0 12 42 26 VVVVVVVVVLLILLLLLLLLLLLLLLLLLLLLLLLLLLIML
59 64 A G H 3X< S+ 0 0 101 42 50 NNNNKKKKKNTNKNNNNNNNNNNNKKKKKKKKKKKNNNENN
63 68 A Q H >< S+ 0 0 122 42 67 QQQQKKKKKGSGDKKKKKKKKKKKDDDDDDDDDDDKKKRNN
64 69 A A T 3X S+ 0 0 2 42 53 AAAAAAAAAAAAAVVVVVVVVVVVAAAAAAAAAAAVVVAAS
65 70 A K H <> S+ 0 0 98 42 82 KKKKQQQQQSTKTSSSSSSSSSSSTTTTTTTTTTTSSSKKA
66 71 A G H <> S+ 0 0 40 42 0 GGGGGGGGGGGgGGGGGGGGGGGGGGGGGGGGGGGGGGGgG
67 72 A V H > S+ 0 0 20 42 42 VVVVVVVVVFFiVLLLLLLLLLLLVVVVVVVVVVVLLLYvY
68 73 A F H >X S+ 0 0 1 42 33 FFFFFFFFFFFRFLLLLLLLLLLLFFFFFFFFFFFLLLVRI
69 74 A S H 3X S+ 0 0 26 42 52 SSSSSSSSSRRSRRRRRRRRRRRRRRRRRRRRRRRRRRKSR
70 75 A R H 3X S+ 0 0 170 42 90 RRRRQQQQQTKEHSSSSSSSSSSSHHHHHHHHHHHSSSTET
71 76 A V H X< S+ 0 0 11 42 79 VVVVMMMMMIMLVKKKKKKKKKKKVVVVVVVVVVVKKKRLL
72 77 A L H >X S+ 0 0 6 42 13 LLLLLLLLLLLMLLLLLLLLLLLLLLLLLLLLLLLLLLICL
73 78 A A H 3< S+ 0 0 40 42 49 AAAAAAAAAASKSAAAAAAAAAAASSSSSSSSSSSAAAAKA
74 79 A H T << S+ 0 0 150 42 86 HHHHQQQQQKMRKAAAAAAAAAAAKKKKKKKKKKKAAAKRK
75 80 A N T <4 S+ 0 0 105 42 72 NNNNNNNNNNQKHEEEEEEEEEEEHHHHHHHHHHHEEEVKS
76 81 A L < - 0 0 80 42 38 LLLLLLLLLLLLLWWWWWWWWWWWLLLLLLLLLLLWWWLLL
77 82 A Y + 0 0 206 42 76 YYYYYYYYYNTETTTTTTTTTTTTTTTTTTTTTTTTTTDPN
78 83 A L >> - 0 0 102 42 86 LLLLLLLLLLLMISSSSSSSSSSSIIIIIIIIIIISSSWLW
79 84 A A G >4 S+ 0 0 65 42 109 AAAAAAAAARRRRYYYYYYYYYYYRRRRRRRRRRRYYYRRR
80 85 A K G 34 S+ 0 0 177 42 46 KKKKKKKKKKKKRKKKKKKKKKKKRSSSSSSSSSRKKKKIK
81 86 A A G <4 S+ 0 0 17 42 61 AAAASSSSSAVIIVVVVVVVVVVVIIIIIIIIIIIVVVVIV
82 87 A V << + 0 0 6 42 44 VVVVVVVVVPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
83 88 A Q - 0 0 62 42 52 QQQQKKKKKANEQEEEEEEEEEEEQQQQQQQQQQQEEEDEQ
84 89 A I - 0 0 7 42 18 IIIILLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLILI
85 90 A H E -b 43 0A 83 42 91 HHHHHHHHHVIHVRRRRRRRRRRRVVVVVVVVVVVRRRHEH
86 91 A F E +b 44 0A 78 42 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
87 92 A V + 0 0 17 42 68 VVVVVVVVVLVVYVVVVVVVVVVVYYYYYYYYYYYVVVEVH
88 93 A K S S- 0 0 88 42 102 KKKKKKKKKNKFYIIIIIIIIIIIYYYYYYYYYYYIIILYQ
89 94 A D S S- 0 0 61 42 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
90 95 A K S > S- 0 0 139 42 43 KKKKDDDDDENEDEEEEEEEEEEEDDDDDDDDDDDEEEEET
91 96 A A T 3 S- 0 0 79 42 72 AAAAAAAAASASSTTTTTTTTTTTSSSSSSSSSSSTTTLSV
92 97 A I T 3 S- 0 0 109 42 20 IIIIIIIIIISIIIIIIIIIIIIIIIIIIIIIIIIIIINIS
93 98 A D S < S+ 0 0 105 42 51 DDDDDDDDDDEDSDDDDDDDDDDDSSSSSSSSSSSDDDNDE
94 99 A N S S- 0 0 141 26 70 NNNNNNNNNKN K KKKKKKKKKKK SY
95 100 A A 0 0 75 24 42 AAAAAAAAA G GGGGGGGGGGG AG
96 101 A M 0 0 219 12 8 MMMMLLLLL MM
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 10 0 0 0.000 0 1.00
2 7 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33 60 7 0 15 0 0 0.853 28 0.62
3 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 98 2 0 0 0 0 41 0 0 0.115 3 0.97
4 9 A 0 80 12 0 0 0 5 0 0 0 0 0 0 0 0 2 0 0 0 0 41 0 0 0.669 22 0.71
5 10 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 95 0 0 41 0 0 0.195 6 0.90
6 11 A 0 0 0 0 0 0 0 0 29 0 44 0 0 0 0 0 0 0 27 0 41 0 0 1.074 35 0.32
7 12 A 0 39 2 0 0 0 0 0 0 0 0 29 0 0 0 0 5 0 0 24 41 0 0 1.309 43 0.01
8 13 A 0 5 95 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.195 6 0.94
9 14 A 2 2 24 0 0 0 0 0 0 0 0 0 0 29 0 39 2 0 0 0 41 0 0 1.343 44 0.03
10 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 27 32 2 2 0 37 41 0 0 1.266 42 0.31
11 16 A 34 59 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 41 0 0 0.918 30 0.58
12 17 A 0 32 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.625 20 0.73
13 18 A 0 0 0 0 0 0 0 0 2 0 34 0 0 0 0 0 0 0 63 0 41 0 0 0.746 24 0.48
14 19 A 0 0 0 0 0 0 0 0 0 0 5 0 0 2 24 0 29 2 34 2 41 0 0 1.490 49 0.23
15 20 A 0 0 7 0 0 0 0 0 66 0 0 27 0 0 0 0 0 0 0 0 41 0 0 0.819 27 0.48
16 21 A 12 38 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.968 32 0.67
17 22 A 2 2 24 2 0 0 2 0 33 0 31 2 0 0 0 0 0 0 0 0 42 0 0 1.516 50 0.12
18 23 A 0 0 0 0 0 0 2 0 0 0 2 33 0 12 2 0 0 0 48 0 42 0 0 1.240 41 0.27
19 24 A 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 5 42 0 0 0.303 10 0.89
20 25 A 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.98
21 26 A 0 0 0 0 0 0 29 0 0 0 0 0 0 2 0 5 0 0 64 0 42 0 0 0.876 29 0.34
22 27 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 45 55 42 0 0 0.689 22 0.66
23 28 A 2 0 0 0 0 0 0 0 2 12 29 0 0 0 0 33 0 17 0 5 42 0 0 1.599 53 0.16
24 29 A 12 33 33 0 0 0 0 0 0 0 0 12 0 0 0 0 0 0 2 7 42 0 0 1.517 50 0.29
25 30 A 29 0 38 0 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.092 36 0.37
26 31 A 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 93 0 0 0 0 42 0 0 0.257 8 0.79
27 32 A 0 45 0 0 2 0 0 2 0 0 0 40 0 0 0 2 2 0 2 2 42 0 0 1.259 42 0.16
28 33 A 2 0 0 0 0 0 0 24 38 5 29 2 0 0 0 0 0 0 0 0 42 0 0 1.390 46 0.37
29 34 A 31 0 0 0 0 0 0 0 0 0 0 12 0 24 33 0 0 0 0 0 42 0 0 1.324 44 0.03
30 35 A 62 2 33 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.841 28 0.77
31 36 A 2 0 0 5 0 0 0 0 0 0 12 79 0 2 0 0 0 0 0 0 42 0 0 0.766 25 0.58
32 37 A 0 0 0 0 0 0 5 0 62 0 0 0 0 26 0 0 0 0 0 7 42 0 0 0.981 32 0.29
33 38 A 67 2 29 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 42 0 0 0.806 26 0.78
34 39 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 36 60 0 0 0 2 42 0 0 0.855 28 0.63
35 40 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
36 41 A 0 0 0 0 0 0 0 0 2 0 95 2 0 0 0 0 0 0 0 0 42 0 0 0.224 7 0.91
37 42 A 0 0 0 0 0 0 0 0 14 0 2 0 0 0 0 2 0 0 38 43 42 0 0 1.187 39 0.44
38 43 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 42 0 0 0.000 0 1.00
39 44 A 0 55 0 0 12 0 0 0 0 0 0 0 0 0 0 33 0 0 0 0 42 0 0 0.949 31 0.24
40 45 A 0 12 0 0 12 0 0 0 0 0 76 0 0 0 0 0 0 0 0 0 42 0 0 0.714 23 0.41
41 46 A 62 0 5 0 0 0 5 0 0 0 0 0 0 29 0 0 0 0 0 0 42 0 0 0.945 31 0.26
42 47 A 14 0 0 0 0 0 0 0 83 0 0 0 2 0 0 0 0 0 0 0 42 0 0 0.519 17 0.69
43 48 A 12 0 0 0 0 0 0 0 0 0 0 12 0 0 0 76 0 0 0 0 42 0 0 0.714 23 0.51
44 49 A 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.637 21 0.84
45 50 A 0 0 0 0 33 0 67 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.637 21 0.96
46 51 A 5 57 33 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 42 0 0 0.976 32 0.57
47 52 A 0 0 0 0 0 0 0 0 0 0 7 5 0 0 0 0 0 0 2 86 42 1 0 0.555 18 0.73
48 53 A 5 0 0 0 2 0 0 0 34 0 0 0 59 0 0 0 0 0 0 0 41 0 0 0.918 30 0.39
49 54 A 0 32 0 0 2 0 29 0 0 0 0 2 0 34 0 0 0 0 0 0 41 0 0 1.272 42 0.16
50 55 A 0 0 29 0 2 0 0 0 0 2 2 0 0 0 0 33 0 0 17 14 42 0 0 1.568 52 0.03
51 56 A 0 0 2 0 0 0 0 0 0 29 0 0 0 2 57 5 0 2 0 2 42 0 0 1.179 39 0.36
52 57 A 0 0 0 0 0 0 0 0 2 0 12 2 0 0 0 2 0 50 29 2 42 0 0 1.314 43 0.39
53 58 A 0 2 2 0 0 0 0 0 0 0 33 0 0 0 2 2 24 2 31 0 42 1 0 1.516 50 0.15
54 59 A 0 0 56 34 0 0 0 0 0 0 2 2 0 0 2 2 0 0 0 0 41 0 0 1.053 35 0.44
55 60 A 0 15 0 0 0 0 0 0 29 22 0 0 0 0 0 0 12 0 0 22 41 0 0 1.563 52 0.16
56 61 A 0 0 0 0 0 0 0 0 2 0 0 12 0 0 12 74 0 0 0 0 42 0 0 0.820 27 0.62
57 62 A 60 0 2 0 0 0 0 5 2 0 0 29 2 0 0 0 0 0 0 0 42 0 0 1.079 36 0.39
58 63 A 24 69 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.831 27 0.73
59 64 A 0 0 0 0 0 0 0 12 0 0 0 0 0 5 0 5 29 38 12 0 42 0 0 1.522 50 0.36
60 65 A 0 0 0 0 0 0 0 0 57 0 0 0 0 0 0 5 0 0 33 5 42 0 0 0.976 32 0.38
61 66 A 33 10 5 0 24 0 29 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.435 47 0.37
62 67 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 40 0 2 55 0 42 0 0 0.874 29 0.49
63 68 A 0 0 0 0 0 0 0 5 0 0 2 0 0 0 2 45 12 0 5 29 42 0 0 1.438 48 0.33
64 69 A 33 0 0 0 0 0 0 0 64 0 2 0 0 0 0 0 0 0 0 0 42 0 0 0.739 24 0.46
65 70 A 0 0 0 0 0 0 0 0 2 0 36 31 0 0 0 19 12 0 0 0 42 0 0 1.389 46 0.18
66 71 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 42 0 2 0.000 0 1.00
67 72 A 55 33 2 0 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.075 35 0.58
68 73 A 2 33 2 0 57 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 42 0 0 1.009 33 0.67
69 74 A 0 0 0 0 0 0 0 0 0 0 29 0 0 0 69 2 0 0 0 0 42 0 0 0.703 23 0.48
70 75 A 0 0 0 0 0 0 0 0 0 0 33 7 0 29 12 2 12 5 0 0 42 0 0 1.653 55 0.09
71 76 A 40 7 2 14 0 0 0 0 0 0 0 0 0 0 2 33 0 0 0 0 42 0 0 1.377 45 0.20
72 77 A 0 93 2 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 42 0 0 0.336 11 0.87
73 78 A 0 0 0 0 0 0 0 0 64 0 31 0 0 0 0 5 0 0 0 0 42 0 0 0.792 26 0.50
74 79 A 0 0 0 2 0 0 0 0 33 0 0 0 0 12 5 36 12 0 0 0 42 0 0 1.475 49 0.14
75 80 A 2 0 0 0 0 0 0 0 0 0 2 0 0 29 0 5 2 33 26 0 42 0 0 1.487 49 0.28
76 81 A 0 67 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.637 21 0.61
77 82 A 0 0 0 0 0 0 24 0 0 2 0 64 0 0 0 0 0 2 5 2 42 0 0 1.038 34 0.24
78 83 A 0 31 29 2 0 5 0 0 0 0 33 0 0 0 0 0 0 0 0 0 42 0 0 1.321 44 0.13
79 84 A 0 0 0 0 0 0 33 0 24 0 0 0 0 0 43 0 0 0 0 0 42 0 0 1.071 35 -0.10
80 85 A 0 0 2 0 0 0 0 0 0 0 21 0 0 0 7 69 0 0 0 0 42 0 0 0.863 28 0.53
81 86 A 40 0 33 0 0 0 0 0 14 0 12 0 0 0 0 0 0 0 0 0 42 0 0 1.264 42 0.39
82 87 A 24 0 0 0 0 0 0 0 0 76 0 0 0 0 0 0 0 0 0 0 42 0 0 0.549 18 0.55
83 88 A 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 12 43 38 2 2 42 0 0 1.251 41 0.47
84 89 A 0 81 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.487 16 0.82
85 90 A 31 0 2 0 0 0 0 0 0 0 0 0 0 31 33 0 0 2 0 0 42 0 0 1.270 42 0.08
86 91 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
87 92 A 64 2 0 0 0 0 29 0 0 0 0 0 0 2 0 0 0 2 0 0 42 0 0 0.909 30 0.31
88 93 A 0 2 33 0 2 0 31 0 0 0 0 0 0 0 0 26 2 0 2 0 42 0 0 1.436 47 -0.02
89 94 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 42 0 0 0.000 0 1.00
90 95 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 12 0 43 2 40 42 0 0 1.161 38 0.57
91 96 A 2 2 0 0 0 0 0 0 26 0 36 33 0 0 0 0 0 0 0 0 42 0 0 1.263 42 0.27
92 97 A 0 0 93 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 2 0 42 0 0 0.303 10 0.80
93 98 A 0 0 0 0 0 0 0 0 0 0 29 0 0 0 0 0 0 5 2 64 42 0 0 0.876 29 0.49
94 99 A 0 0 0 0 0 0 4 0 0 0 4 0 0 0 0 50 0 0 42 0 26 0 0 0.961 32 0.30
95 100 A 0 0 0 0 0 0 0 54 46 0 0 0 0 0 0 0 0 0 0 0 24 0 0 0.690 23 0.57
96 101 A 0 42 0 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0.679 22 0.91
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
12 66 71 1 gFi
40 66 71 1 gFv
//