Complet list of 1oqk hssp file
Complete list of 1oqk.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1OQK
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-04
HEADER HYDROLASE 10-MAR-03 1OQK
COMPND MOL_ID: 1; MOLECULE: CONSERVED PROTEIN MTH11; CHAIN: A; EC: 3.1.26.5;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS
AUTHOR W.P.BOOMERSHINE,C.A.MCELROY,H.TSAI,V.GOPALAN,M.P.FOSTER
DBREF 1OQK A 1 93 UNP O26119 RNP1_METTH 1 93
SEQLENGTH 78
NCHAIN 1 chain(s) in 1OQK data set
NALIGN 99
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : RNP1_METTH 1OQK 1.00 1.00 1 78 9 86 78 0 0 93 O26119 Ribonuclease P protein component 1 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rnp1 PE=1 SV=1
2 : D9PV48_METTM 0.92 0.99 1 78 9 86 78 0 0 93 D9PV48 Ribonuclease P protein component 1 OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=rnp1 PE=3 SV=1
3 : T2GH79_METTF 0.91 0.97 1 78 9 86 78 0 0 93 T2GH79 Ribonuclease P protein component 1 OS=Methanothermobacter thermautotrophicus CaT2 GN=rnp1 PE=3 SV=1
4 : E3GZC7_METFV 0.65 0.86 1 78 9 86 78 0 0 93 E3GZC7 Ribonuclease P protein component 1 OS=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) GN=rnp1 PE=3 SV=1
5 : F6D7K9_METSW 0.58 0.79 1 78 20 96 78 1 1 104 F6D7K9 Ribonuclease P protein component 1 OS=Methanobacterium sp. (strain SWAN-1) GN=rnp1 PE=3 SV=1
6 : RNP1_METJA 0.58 0.77 1 78 9 85 78 1 1 95 Q57903 Ribonuclease P protein component 1 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rnp1 PE=3 SV=1
7 : F0TB83_METSL 0.55 0.79 1 78 9 86 78 0 0 93 F0TB83 Ribonuclease P protein component 1 OS=Methanobacterium sp. (strain AL-21) GN=rnp1 PE=3 SV=1
8 : F6BD92_METIK 0.55 0.78 1 78 9 85 78 1 1 95 F6BD92 Ribonuclease P protein component 1 OS=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) GN=rnp1 PE=3 SV=1
9 : C7P7H5_METFA 0.54 0.76 1 78 9 85 78 1 1 95 C7P7H5 Ribonuclease P protein component 1 OS=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) GN=rnp1 PE=3 SV=1
10 : C9RET8_METVM 0.54 0.74 1 78 9 85 78 1 1 96 C9RET8 Ribonuclease P protein component 1 OS=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) GN=rnp1 PE=3 SV=1
11 : D3S6E1_METSF 0.54 0.74 1 78 9 85 78 1 1 95 D3S6E1 Ribonuclease P protein component 1 OS=Methanocaldococcus sp. (strain FS406-22) GN=rnp1 PE=3 SV=1
12 : K6T1N1_9EURY 0.54 0.78 1 78 9 86 78 0 0 94 K6T1N1 Ribonuclease P protein component 1 OS=Methanobacterium sp. Maddingley MBC34 GN=rnp1 PE=3 SV=1
13 : G7WMR9_METH6 0.53 0.67 1 78 10 86 78 1 1 97 G7WMR9 Ribonuclease P protein component 1 OS=Methanosaeta harundinacea (strain 6Ac) GN=rnp1 PE=3 SV=1
14 : H1KXV0_9EURY 0.53 0.78 1 78 24 100 78 1 1 110 H1KXV0 Ribonuclease P protein component 1 OS=Methanotorris formicicus Mc-S-70 GN=rnp1 PE=3 SV=1
15 : N6VSM3_9EURY 0.53 0.76 1 78 8 84 78 1 1 94 N6VSM3 Ribonuclease P protein component 1 OS=Methanocaldococcus villosus KIN24-T80 GN=rnp1 PE=3 SV=1
16 : U6EAK6_9EURY 0.53 0.81 1 78 9 86 78 0 0 94 U6EAK6 Ribonuclease P protein component 1 OS=Methanobacterium sp. MB1 GN=rnp1 PE=3 SV=1
17 : B7R349_9EURY 0.51 0.71 1 78 8 83 78 1 2 89 B7R349 Ribonuclease P protein component 1 OS=Thermococcus sp. AM4 GN=rnp1 PE=3 SV=1
18 : D5VRU4_METIM 0.51 0.69 1 78 9 84 78 2 2 94 D5VRU4 Ribonuclease P protein component 1 OS=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) GN=rnp1 PE=3 SV=1
19 : F8AM66_METOI 0.51 0.72 1 78 25 102 79 2 2 112 F8AM66 Ribonuclease P protein component 1 OS=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) GN=rnp1 PE=3 SV=1
20 : K2QD52_METFO 0.51 0.73 9 78 1 70 70 0 0 78 K2QD52 Ribonuclease P protein component 1 OS=Methanobacterium formicicum DSM 3637 GN=A994_05651 PE=4 SV=1
21 : C5A277_THEGJ 0.50 0.72 1 78 8 83 78 1 2 89 C5A277 Ribonuclease P protein component 1 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rnp1 PE=3 SV=1
22 : I7LMX7_METBM 0.50 0.72 1 78 9 85 78 1 1 90 I7LMX7 Ribonuclease P protein component 1 OS=Methanoculleus bourgensis (strain ATCC 43281 / DSM 3045 / OCM 15 / MS2) GN=rnp1 PE=3 SV=1
23 : A3CT05_METMJ 0.49 0.72 1 78 9 85 78 1 1 90 A3CT05 Ribonuclease P protein component 1 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rnp1 PE=3 SV=1
24 : R7PUD2_9EURY 0.49 0.69 1 78 9 85 78 1 1 92 R7PUD2 Ribonuclease P protein component 1 OS=Methanobrevibacter smithii CAG:186 GN=rnp1 PE=3 SV=1
25 : RNP1_METST 0.49 0.68 1 78 9 85 78 1 1 93 Q2NFW5 Ribonuclease P protein component 1 OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=rnp1 PE=3 SV=1
26 : R9SL32_9EURY 0.48 0.77 2 78 10 86 77 0 0 93 R9SL32 Ribonuclease P protein component 1 OS=Methanobrevibacter sp. AbM4 GN=rnp1 PE=3 SV=1
27 : B9AE84_METSM 0.47 0.68 1 78 9 85 78 1 1 92 B9AE84 Ribonuclease P protein component 1 OS=Methanobrevibacter smithii DSM 2375 GN=rnp1 PE=3 SV=1
28 : E8RAN2_DESM0 0.47 0.70 2 78 11 87 77 0 0 92 E8RAN2 Ribonuclease P protein component 1 OS=Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) GN=rnp1 PE=3 SV=1
29 : J0RY26_9EURY 0.47 0.65 1 78 9 85 78 1 1 91 J0RY26 Ribonuclease P protein component 1 OS=Methanofollis liminatans DSM 4140 GN=rnp1 PE=3 SV=1
30 : L0HKR0_METFS 0.47 0.67 1 78 9 85 78 1 1 94 L0HKR0 Ribonuclease P protein component 1 OS=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) GN=rnp1 PE=3 SV=1
31 : RNP1_METVA 0.47 0.73 1 78 9 89 81 1 3 99 P14022 Ribonuclease P protein component 1 OS=Methanococcus vannielii GN=rnp1 PE=3 SV=1
32 : RNP1_METVS 0.47 0.73 1 78 9 89 81 1 3 99 A6UQ52 Ribonuclease P protein component 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rnp1 PE=3 SV=1
33 : A0B9W2_METTP 0.46 0.67 1 78 9 85 78 1 1 96 A0B9W2 Ribonuclease P protein component 1 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rnp1 PE=3 SV=1
34 : A4FWB3_METM5 0.46 0.72 1 78 9 89 81 1 3 99 A4FWB3 Ribonuclease P protein component 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rnp1 PE=3 SV=1
35 : A6VGZ3_METM7 0.46 0.74 1 78 9 88 80 1 2 98 A6VGZ3 Ribonuclease P protein component 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rnp1 PE=3 SV=1
36 : A9A9Q6_METM6 0.46 0.74 1 78 9 88 80 1 2 98 A9A9Q6 Ribonuclease P protein component 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rnp1 PE=3 SV=1
37 : D2ZQC1_METSM 0.46 0.68 1 78 9 85 78 1 1 92 D2ZQC1 Ribonuclease P protein component 1 OS=Methanobrevibacter smithii DSM 2374 GN=rnp1 PE=3 SV=1
38 : RNP1_META3 0.46 0.73 1 78 9 86 79 2 2 96 A6UWU6 Ribonuclease P protein component 1 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rnp1 PE=3 SV=1
39 : E0SPY5_IGNAA 0.45 0.69 2 78 11 87 77 0 0 95 E0SPY5 Ribonuclease P protein component 1 OS=Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) GN=rnp1 PE=3 SV=1
40 : F8AFV4_PYRYC 0.45 0.63 1 78 8 83 78 1 2 89 F8AFV4 Ribonuclease P protein component 1 OS=Pyrococcus yayanosii (strain CH1 / JCM 16557) GN=rnp1 PE=3 SV=1
41 : I3TDC1_THEC1 0.45 0.70 2 78 11 87 77 0 0 95 I3TDC1 Ribonuclease P protein component 1 OS=Thermogladius cellulolyticus (strain 1633) GN=rnp1 PE=3 SV=1
42 : M0CIS7_9EURY 0.45 0.61 1 77 9 97 89 1 12 107 M0CIS7 Ribonuclease P protein component 1 OS=Halosimplex carlsbadense 2-9-1 GN=rnp1 PE=3 SV=1
43 : M0K8G1_9EURY 0.45 0.57 1 77 10 84 77 2 2 94 M0K8G1 Ribonuclease P protein component 1 OS=Haloarcula amylolytica JCM 13557 GN=rnp1 PE=3 SV=1
44 : RNP1_METS3 0.45 0.68 1 78 9 85 78 1 1 92 A5UL80 Ribonuclease P protein component 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rnp1 PE=3 SV=1
45 : D1JEB4_9ARCH 0.44 0.62 1 78 10 87 78 0 0 89 D1JEB4 Ribonuclease P protein component 1 OS=uncultured archaeon GN=rnp1 PE=3 SV=1
46 : D5E6R9_METMS 0.44 0.66 2 77 11 92 82 2 6 102 D5E6R9 Ribonuclease P protein component 1 OS=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) GN=rnp1 PE=3 SV=1
47 : E1RKD1_METP4 0.44 0.62 1 78 9 85 78 1 1 93 E1RKD1 Ribonuclease P protein component 1 OS=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) GN=rnp1 PE=3 SV=1
48 : G0H2F2_METMI 0.44 0.75 1 78 9 88 80 2 2 98 G0H2F2 Ribonuclease P protein component 1 OS=Methanococcus maripaludis X1 GN=rnp1 PE=3 SV=1
49 : H1YWQ8_9EURY 0.44 0.64 1 78 9 85 78 1 1 93 H1YWQ8 Ribonuclease P protein component 1 OS=Methanoplanus limicola DSM 2279 GN=rnp1 PE=3 SV=1
50 : M0JCB6_HALVA 0.44 0.56 1 77 10 84 78 3 4 94 M0JCB6 Ribonuclease P protein component 1 OS=Haloarcula vallismortis ATCC 29715 GN=rnp1 PE=3 SV=1
51 : M7U2H7_9ARCH 0.44 0.65 2 78 12 86 77 2 2 94 M7U2H7 Ribonuclease P protein component 1 OS=Thaumarchaeota archaeon SCGC AB-539-E09 GN=rnp1 PE=3 SV=1
52 : R7Q0D7_9EURY 0.44 0.62 1 78 8 80 78 3 5 84 R7Q0D7 Ribonuclease P protein component 1 OS=Methanoculleus sp. CAG:1088 GN=rnp1 PE=3 SV=1
53 : RNP1_METMP 0.44 0.75 1 78 7 86 80 1 2 96 P60832 Ribonuclease P protein component 1 OS=Methanococcus maripaludis (strain S2 / LL) GN=rnp1 PE=3 SV=1
54 : S5ZAY2_THELI 0.44 0.62 2 78 9 82 77 2 3 85 S5ZAY2 Ribonuclease P protein component 1 OS=Thermococcus litoralis DSM 5473 GN=rnp1 PE=3 SV=1
55 : W0I4D7_9EURY 0.44 0.67 1 78 8 82 78 2 3 88 W0I4D7 Ribonuclease P protein component 1 OS=Thermococcus sp. ES1 GN=TES1_0200 PE=3 SV=1
56 : G0HW44_HALHT 0.43 0.55 1 77 10 84 77 2 2 94 G0HW44 Ribonuclease P protein component 1 OS=Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755) GN=rnp1 PE=3 SV=1
57 : I3XT72_9CREN 0.43 0.68 2 78 11 87 77 0 0 92 I3XT72 Ribonuclease P protein component 1 OS=Desulfurococcus fermentans DSM 16532 GN=rnp1 PE=3 SV=1
58 : M0MGD5_HALMO 0.43 0.56 1 77 10 84 77 2 2 94 M0MGD5 Ribonuclease P protein component 1 OS=Halococcus morrhuae DSM 1307 GN=rnp1 PE=3 SV=1
59 : M0N6G1_9EURY 0.43 0.56 1 77 10 84 77 2 2 94 M0N6G1 Ribonuclease P protein component 1 OS=Halococcus thailandensis JCM 13552 GN=rnp1 PE=3 SV=1
60 : RNP1_DESK1 0.43 0.68 2 78 11 87 77 0 0 92 B8D5W2 Ribonuclease P protein component 1 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rnp1 PE=3 SV=1
61 : V5TMA8_HALHI 0.43 0.55 1 77 10 84 77 2 2 94 V5TMA8 Ribonuclease P protein component 1 OS=Haloarcula hispanica N601 GN=rnp1 PE=3 SV=1
62 : A7I5P7_METB6 0.42 0.67 1 78 9 85 78 1 1 88 A7I5P7 Ribonuclease P protein component 1 OS=Methanoregula boonei (strain 6A8) GN=rnp1 PE=3 SV=1
63 : D3TB40_ACIB4 0.42 0.55 2 78 10 84 77 2 2 93 D3TB40 Ribonuclease P protein component 1 OS=Aciduliprofundum boonei (strain DSM 19572 / T469) GN=rnp1 PE=3 SV=1
64 : D5U1X8_THEAM 0.42 0.62 2 78 11 86 77 1 1 91 D5U1X8 Ribonuclease P protein component 1 OS=Thermosphaera aggregans (strain DSM 11486 / M11TL) GN=rnp1 PE=3 SV=1
65 : D7D9S8_STAHD 0.42 0.66 2 78 11 87 79 2 4 92 D7D9S8 Ribonuclease P protein component 1 OS=Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) GN=rnp1 PE=3 SV=1
66 : K4MMK5_9EURY 0.42 0.60 2 77 11 93 83 2 7 103 K4MMK5 Ribonuclease P protein component 1 OS=Methanolobus psychrophilus R15 GN=rnp1 PE=3 SV=1
67 : M0K8C7_9EURY 0.42 0.56 1 77 10 84 78 3 4 94 M0K8C7 Ribonuclease P protein component 1 OS=Haloarcula sinaiiensis ATCC 33800 GN=rnp1 PE=3 SV=1
68 : M0KE26_HALAR 0.42 0.58 1 77 10 84 78 3 4 94 M0KE26 Ribonuclease P protein component 1 OS=Haloarcula argentinensis DSM 12282 GN=rnp1 PE=3 SV=1
69 : M0L1B5_9EURY 0.42 0.58 1 77 10 84 78 3 4 94 M0L1B5 Ribonuclease P protein component 1 OS=Haloarcula californiae ATCC 33799 GN=rnp1 PE=3 SV=1
70 : M0LL43_HALJP 0.42 0.58 1 77 10 84 78 3 4 94 M0LL43 Ribonuclease P protein component 1 OS=Haloarcula japonica DSM 6131 GN=rnp1 PE=3 SV=1
71 : M7TAC4_9EURY 0.42 0.65 1 78 11 86 78 2 2 93 M7TAC4 Ribonuclease P protein component 1 OS=Thermoplasmatales archaeon SCGC AB-539-N05 GN=rnp1 PE=3 SV=1
72 : N6VPN3_9EURY 0.42 0.65 1 78 11 86 78 2 2 93 N6VPN3 Ribonuclease P protein component 1 OS=Thermoplasmatales archaeon SCGC AB-539-C06 GN=rnp1 PE=3 SV=1
73 : RNP1_HALMA 0.42 0.58 1 77 10 84 78 3 4 94 P22527 Ribonuclease P protein component 1 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rnp1 PE=3 SV=1
74 : RNP1_METBF 0.42 0.64 2 78 15 100 86 2 9 110 Q46GA3 Ribonuclease P protein component 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rnp1 PE=3 SV=1
75 : S5Z6X4_9CREN 0.42 0.63 1 78 10 87 78 0 0 94 S5Z6X4 Ribonuclease P protein component 1 OS=Thermofilum sp. 1910b GN=rnp1 PE=3 SV=1
76 : C7P4C8_HALMD 0.41 0.56 1 77 11 91 82 3 6 101 C7P4C8 Ribonuclease P protein component 1 OS=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) GN=rnp1 PE=3 SV=1
77 : RNP1_METBU 0.41 0.60 2 78 11 92 82 2 5 101 Q12ZU3 Ribonuclease P protein component 1 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rnp1 PE=3 SV=1
78 : RNP1_STAMF 0.41 0.67 2 78 11 87 79 2 4 92 A3DNB5 Ribonuclease P protein component 1 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rnp1 PE=3 SV=1
79 : U5Q284_9EURY 0.41 0.59 1 78 8 80 78 3 5 84 U5Q284 Ribonuclease P protein component 1 OS=Candidatus Methanomethylophilus alvus Mx1201 GN=rnp1 PE=3 SV=1
80 : C7NV55_HALUD 0.40 0.63 1 78 10 86 78 1 1 103 C7NV55 Ribonuclease P protein component 1 OS=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) GN=rnp1 PE=3 SV=1
81 : M0LTP5_9EURY 0.40 0.60 1 77 10 91 82 2 5 101 M0LTP5 Ribonuclease P protein component 1 OS=Halococcus hamelinensis 100A6 GN=rnp1 PE=3 SV=1
82 : RNP1_METAC 0.40 0.65 2 78 15 100 86 3 9 110 Q8TRT9 Ribonuclease P protein component 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rnp1 PE=3 SV=1
83 : RNP1_METMA 0.40 0.66 2 78 15 100 86 3 9 110 Q8PV42 Ribonuclease P protein component 1 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rnp1 PE=3 SV=1
84 : D7E8S7_METEZ 0.39 0.59 2 77 11 92 83 3 8 100 D7E8S7 Ribonuclease P protein component 1 OS=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) GN=rnp1 PE=3 SV=1
85 : M1PYU7_METMZ 0.38 0.65 2 78 11 96 86 2 9 106 M1PYU7 Ribonuclease P protein component 1 OS=Methanosarcina mazei Tuc01 GN=rnp1 PE=3 SV=1
86 : Q3IMY0_NATPD 0.38 0.59 1 77 8 88 82 3 6 98 Q3IMY0 Ribonuclease P protein component 1 OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=rnp1 PE=3 SV=1
87 : D3E2F0_METRM 0.37 0.61 2 78 10 104 95 1 18 111 D3E2F0 Ribonuclease P protein component 1 OS=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=rnp1 PE=3 SV=1
88 : D7DUA2_METV3 0.37 0.54 1 78 9 110 102 3 24 120 D7DUA2 Ribonuclease P protein component 1 OS=Methanococcus voltae (strain ATCC BAA-1334 / A3) GN=rnp1 PE=3 SV=1
89 : L0KYK3_METHD 0.37 0.60 2 78 11 94 84 2 7 103 L0KYK3 Ribonuclease P protein component 1 OS=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) GN=rnp1 PE=3 SV=1
90 : D8J9J3_HALJB 0.35 0.48 1 77 10 105 98 4 23 115 D8J9J3 Ribonuclease P protein component 1 OS=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) GN=HacjB3_05070 PE=3 SV=1
91 : F7PPN0_9EURY 0.35 0.58 1 78 10 86 79 2 3 103 F7PPN0 Ribonuclease P protein component 1 OS=Halorhabdus tiamatea SARL4B GN=rnp1 PE=3 SV=1
92 : U2YG06_9EURY 0.35 0.46 1 77 10 110 102 4 26 120 U2YG06 Ribonuclease P protein component 1 OS=Halarchaeum acidiphilum MH1-52-1 GN=rnp1 PE=3 SV=1
93 : M0MI66_9EURY 0.34 0.46 1 77 10 110 101 4 24 120 M0MI66 Ribonuclease P protein component 1 OS=Halococcus saccharolyticus DSM 5350 GN=rnp1 PE=3 SV=1
94 : M1XP54_NATM8 0.34 0.49 1 77 8 97 91 4 15 107 M1XP54 Ribonuclease P protein component 1 OS=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) GN=rnp1 PE=3 SV=1
95 : M0AFK7_9EURY 0.33 0.51 1 78 10 107 98 4 20 134 M0AFK7 Ribonuclease P protein component 1 OS=Natrialba chahannaoensis JCM 10990 GN=C482_12819 PE=3 SV=1
96 : M0MU44_9EURY 0.33 0.45 1 77 10 108 99 4 22 118 M0MU44 Ribonuclease P protein component 1 OS=Halococcus salifodinae DSM 8989 GN=rnp1 PE=3 SV=1
97 : RNP1_HALS3 0.33 0.45 1 77 11 113 104 4 28 123 B0R664 Ribonuclease P protein component 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rnp1 PE=3 SV=1
98 : RNP1_HALSA 0.33 0.45 1 77 11 113 104 4 28 123 O24785 Ribonuclease P protein component 1 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rnp1 PE=3 SV=1
99 : M0ABJ6_9EURY 0.32 0.51 1 78 10 107 98 4 20 134 M0ABJ6 Ribonuclease P protein component 1 OS=Natrialba hulunbeirensis JCM 10989 GN=C483_01269 PE=3 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 9 A R 0 0 298 77 12 RRRRRRRRRRRRRRRRWRR WRRHR H RRRRRRRRHR W RRHQ RRRR RR WR RR RR RRRR
2 10 A H - 0 0 159 99 8 HHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
3 11 A E - 0 0 135 99 0 EEEEEEEEEEEEEEEEEEE EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 12 A L + 0 0 38 99 4 LLLLLLLLLLLLLLLLLLL LLLFFLFILLLLLLLLFLLLILLFLLLLLLLLLLLLLLLLLLLLLLLLLL
5 13 A I S S+ 0 0 111 99 31 IIIIIIVIIIIVIIIVIII IIIIIIIIIIVVIIIIIIIIIVVIIIIITVIIIIIVIRRIVIIIIIVVVV
6 14 A G S S+ 0 0 31 99 0 GGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7 15 A L - 0 0 34 99 1 LLLLLLLLLLLLLLLMLLL LLLLLLLLLMLLLLLLLLLLLLLLLLLLLLILLLLLLLLLLLLLLLLLLL
8 16 A S E -AB 25 56A 37 98 74 SSSNPKGEKDREPEKEKKN KDDSNHSKADNNTDNDSDDKRSDSKMKNTDDDNKKDEQQEDDDRRVDDDD
9 17 A V E -AB 24 55A 0 99 54 VVVVVVVVVVVVVVVVAVVMAVVVVVVTVILLVLLLVVVAVACVTVALVCIVLVVCVTTVCVVAIVCCCC
10 18 A R E -AB 23 54A 161 99 67 RRRKKEEEEEEEEEEKKEEERLLSEESRSLEEEEEESETRRRESEDAEKERSEKKERRRRELERKEEEEE
11 19 A I E - B 0 53A 10 100 15 IIIIVIVIIIIIVIIIIIIIIVVVVVVILVIIVVVIVIIIVVVVIVVVVVVVVVIVIVVIVVIVIVVVVV
12 20 A A E S- 0 0A 76 100 66 AAAANVVVVIVTAVVTIVVTIAVTISTLVSVVIVVVTTLVLRVTGVEVEVVLVIKVLAALVAKIIVVVVV
13 21 A R E - B 0 52A 128 99 75 RRRKEENKEDEHRKHHRSKHRRR.NYSQKGNNDKKKSQSKSAASADRKSANSKNRAQAAQAGDEEDASAA
14 22 A S - 0 0 9 99 60 SSSCSASSAAASGSASASSSAAASSS.YAASSTSSSVSHAYGAVSSSSSADASSSAYAAYAASYYAAAAA
15 23 A V S S+ 0 0 65 100 73 VVVTSKQRKKKLTRKLSPPLSSSVKSVPRATTPTTTSTSTTDSSTTTTTSCPTSSSPSSPSTTPPTSSSS
16 24 A H S >> S- 0 0 99 100 43 HHHHHNHNNNNHNNNHHNNHHNNSHTSDNNDDNDDDNNDHDNNNNNNDNNNFDHHNDNNDNNNDDNNNNN
17 25 A R T 34 S+ 0 0 214 99 67 RRRKEKAPKKKGPPKGPKLGPPPNEKNRPPKKRSFSEKPPTPPENQPSSPS.SPPPPGGPPPPPKPPPPP
18 26 A D T 34 S+ 0 0 160 99 69 DDDPGAGSASADASSDESSDEGGEKSEGTDRRTGSGSSHGNDDSNYSGFDS.GGEASSSSALNSSADDDD
19 27 A I T X4 S+ 0 0 22 99 60 IIILFMLMMMMLQMMLLLLLLHHSFLSLHQLLMLLLLLLYLLALMLQLQAN.LLLALLLLAHQVLLAVVV
20 28 A Q T 3< S+ 0 0 103 100 64 QQQEIITIIIVNAIIKVVVKVVALIILIVRIIAIIIRVILNLIRLAVINVNSIIVVVVVVVQIKIIIVIV
21 29 A G T 3 S+ 0 0 45 100 25 GGGGGGGGGGGGGGGGGGGGGGGRGGRGGGSSGSSSLGGGGDGLGGGSNGGGSGGGGGGGGGGGGDGGGG
22 30 A I < - 0 0 35 100 39 IIIVIIIIIIIIIIIIIIIIIVVLILLLILTTMTTTKLVILIIKLIITIILITIIILIILIVKFLIIIII
23 31 A S E +A 10 0A 81 99 71 SSSEHKKKKKKKSKKHEKKKESSKKNKESSKKRKKK.KSEEESGCNSKSSSSKEERKEEKRSRETSSSSS
24 32 A G E -A 9 0A 21 100 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGG
25 33 A R E -A 8 0A 102 99 73 RRRRKKQRKKRRRRKRYRKFYRRTIKTRRRRRLRRRTKRYVRT.AKIRRTTRRYYTKSSKTHRVLKTTTT
26 34 A V + 0 0 0 100 6 VVVVVVVVVVVVVIVVVVVVVIVVIVVVIVVVVVVVVIIVVVVVVVVVIVVVVVIVVVVVVIIVVVVVVV
27 35 A V - 0 0 22 100 25 VVVIVVIVVIVVVIVVLVVVLITIIIIVVIIIVIIIIVVIIVVIVVAIAVIVIIIVVVVVVIVVVVVVVV
28 36 A D E -D 35 0B 75 100 51 DDDDDDDDDDDDDDDDDDDNDDDDDDDDDDNNDNNNDYDDDAMDDDDNDMDDNDDMDSSDMDDDDDMMMM
29 37 A E E -D 34 0B 90 100 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
30 38 A T E > -D 33 0B 29 99 7 TTTTTTTSTTTTTSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT.TTTTTTTTTTSSTTTTTTTTTTT
31 39 A R T 3 S+ 0 0 76 100 67 RRRKKRRRRRRRRRRKRRRRRRRKRKKLRRRRRRRRKRMRLTTKRRTRKTRKRRKTLEELTRYLQKTTTT
32 40 A N T 3 S+ 0 0 80 99 39 NNNNNNNNNNNNNNKNNNNNNNNNNKNK.NNNNNNNNNNNKNQNNNKNNQKNNNNQKNNKQNHKKNQQQQ
33 41 A T E < -DE 30 47B 26 100 42 TTTTTTTTTTTTTTTTTMTTTTTTTTTTNLMMTTTTTTTTTTMTMMNTMMTTTTTMTTTTMLMTTMMMMM
34 42 A L E -DE 29 46B 0 100 14 LLLLILILLLLIFLLILLLLLLLIILILMLLLFLLLIILLLLLILLMLLLLFLLLLLLLLLVLLLILLLL
35 43 A R E -DE 28 45B 82 99 74 RKKKTVLVVKVTLVITTFITTV.KRTKLLVVVVVVVKNRVLGTKVVLVVTVTVTTTVVVVTAIVLITTTT
36 44 A I E + E 0 44B 0 99 19 IIIIVIVIIIIIIIIIIIII.IVIVIIVVIIIILLLIIIIIIIIIIVLIILILIIIIVVIIIILIVLLLL
37 45 A E E - E 0 43B 68 99 40 EEEEDEEEEEEEEEEEVEEE.RIEDEEEIEEEEEEEEELAEEEEEEIEHEREELVEEEEEEREDEQEEEE
38 46 A M E >> - E 0 42B 23 99 83 MLLLVKVKKKKDTKKDGTRDITLVTTVLLTKKTKKKVRLGTRGVTVFKTGGSKGGGTQQTGTENTTGGGG
39 47 A D T 34 S+ 0 0 138 99 71 DEEK.ESEEKEGREDGDEfGVETDGSDSSPNNQEEEDfNKAgADEESEGADAEEEALGGPAQNGSKAAAA
40 48 A D T 34 S- 0 0 114 72 69 DDDSDDDNDDDESNSERKsEGRGDKDDNRNNN.NNNDnNKEa.DRDGN...GNKK.S..S....LA....
41 49 A G T <4 S+ 0 0 61 99 66 GGGGGGGGGGGGGGGGVKGGDGRNNNNGNGGGRGGGNSGIGSDNRMDGTDGTGVVDGEEGDVGFGGDDDD
42 50 A R E < -E 38 0B 151 100 71 RRRRTRSKKRKNVQKHWVKMREGVECVRGVKKGKKKVKRWRRRVNYRKGRKEKWWRRRRRRGERRRRRRR
43 51 A E E +E 37 0B 145 91 72 EEEEEEEEEEEE.EEE..EEV.EE.EERE.EELEEEEEI.RVVEEELELVPRE..VRTTRVIRRREVVVV
44 52 A I E -E 36 0B 75 96 79 IIIIKVKVVVVKKVVK.VIKWKKKKKKIVRIIRIIIKVL.IAWKKKKIRWAMI..WVKKVWKKIVKWWWW
45 53 A T E -E 35 0B 66 100 83 TTTIQVTVRIRICIVITKRITRQILLIRRRTTRTTTIMTVRTHIRQATKHRVTIIHRRRRHKMRRMHHHH
46 54 A V E -E 34 0B 0 99 17 VVVVVIIIIIIIVIIIVIIIVIIIILIVVIVVVVVVIIVVVVVIIVVLVVI.LVIVIVVIVIIVVVVVVV
47 55 A P E -E 33 0B 40 100 46 PPPPPPPPPPPPPPPPPPPPPPPPPPPFEPPPPVVVPPFPFPPPAPQVQPMPVPPPFPPFPPMFLPPPPP
48 56 A K > + 0 0 9 100 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
49 57 A G T 3 S- 0 0 28 100 71 GGGDNDADDDDGSDDGDADGDRRKSDKSKMEEAEEEKDRDPADKASKEIDKSENNDFAAFDAKEAADDDD
50 58 A I T 3 S+ 0 0 73 100 79 IITIVIVIVIVSCIINVLVNVFFGDVGNGHIIHIIIGIYVSGSGGGGIGSNGIVVSNGGNSGGNNDSSSS
51 59 A A < - 0 0 0 100 56 AAAAAAAAAAAVNAASVAAAVSSSVSSGSSSSTSSSSAGVGTASNSASAAANSAAASAASASAGGAAAAA
52 60 A V E +B 13 0A 16 100 68 VVVITVTVVIVTCVITEVVTEVVIVIIVVIIISTTTIVLEVSTIIKVTVTVETEETITTITLKVVTTTTT
53 61 A F E -BC 11 65A 1 100 6 FFFFFFFFFFFFFFFFIFFFIFFFFFFFFFFFFFFFFFFIFFFFFFFFFFFFFFFFLFFLFFFFFFFFFF
54 62 A H E -BC 10 64A 71 99 83 HHHHHLRR.VVKIRLEELRKERRVLQVELRRRIRRRVKEEEEAVIVRRQATRREESEEEESRGEQVAAAA
55 63 A F E -BC 9 63A 3 100 15 FFFFFFFFLFFFFFFFFFFFFFFFFFFFFVFFFIIIFFTFFFFFFFMIIFFFIFFFFFFFFLVFFFFFFF
56 64 A R E -BC 8 62A 120 100 80 RRRKKQTKFLQTTKHTEHETERRETKETTREETDQQEKTEKEAEEHHQRDNTQEEAMAAMASWTMRDDDD
57 65 A T E >> - C 0 61A 19 99 35 TTTLLLLLQLLLLLLLTLLLTLLLLILLLLFFLFFFLLLLLLVLLLLFLLL.FIVILFLLILLLLILLLL
58 66 A P T 34 S+ 0 0 122 99 65 PPPPP.PPLKKSSPDPADKPAPPPPPPPPPssPkedPNPEPATPGpPePsPYeDGDPEEPDPGPppssss
59 67 A Q T 34 S- 0 0 152 87 57 QEEDDKETKNGNQ.NNAN.DADDTQDTSDGttDdddT.GDHT.TGgDeDeEQn...D..D.DDDeseeee
60 68 A G T <4 S+ 0 0 67 89 51 GGGGGGGCGCCGGTCGGCDGGGGGGGGGGRPPGVVVGENGGGGGGaDvD..NVDDGGGGGGN.G.e....
61 69 A E E < -C 57 0A 92 92 79 EEETTCGRCKKVLCKVEKKVETTEETEETEKKQVVVEETAEEQEVTTVT.GEVKKQEEEEQTEG.K....
62 70 A L E +C 56 0A 105 96 89 LVVKVKL.K.VIKR.IR.STKTTKKWKTRTKKKKKKKYKKVLRKRSLKLTRQKKKRAYHARLYSKYTTTT
63 71 A V E -C 55 0A 59 100 23 VVVVVVVVVVKIVVVVVVVLIVVVVVVVAVVVVVVVVIMIVVVVVVVIVVVIIIIVVAAVVVVVVVVVVV
64 72 A E E -C 54 0A 120 99 80 EEEEEKDDKK.EKDKERKDERDDESEEVEEDDRDDDEEVKVTRERERDRLEDDRVRVTTVRETVIKLLLL
65 73 A I E -C 53 0A 45 100 25 IIIIIVLVVVVIAVVLVVVIVVVIIVIIVIIIIIIIIVIIIVVIVVVIVVVIIIIVIVVIVIIIIIVVVV
66 74 A D + 0 0 45 100 50 DDDDDDDDDDDEEDDKDDIKDDDNDDNKDDDDADDDNIDPKEDNKGDDDDKEDKDDKAAKDHRKRNDDDD
67 75 A G S S+ 0 0 0 100 5 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
68 76 A R S S+ 0 0 147 100 77 RGGKRRRRRRRKSRRERRSDRSSNKRNSSSRRSRRKNESRDRDNNISRSDVSREKDSEESDSDFVNDDDD
69 77 A A S S+ 0 0 86 100 86 AAAIILILLLLIVLLINLLINSSIVIIDAVLLVLLLILQELRRIRLVLVRAKLEERTRRTRAREQLRRRR
70 78 A L + 0 0 101 100 16 LLLLILILLLLILLLILLLILLLLILLILMLLLLLLLLILILLLLLLLLLLLLLLLILLILLIIILLLLL
71 79 A V + 0 0 71 100 47 VVVVVIVIIVIVVIIVVIIVVEESTLSIVVIIIVVVSMLVLVVSVLVVAVVLVIIVIVVIVINLLVVVVV
72 80 A A - 0 0 63 99 62 AAAAAGAGGGGSSGGSGGGSGMTIASIGALGGSGGGIGGGGAAISSAGSAGHGGGAGAAGALYGGSAAAA
73 81 A R + 0 0 107 100 36 RRRRRRRRRRRRQRRRRRRRRQQRRRRRQARRQRRRRRRRRRRRRQQRQRRRRRRRRPPRRARRRQRRRR
74 82 A P S > S+ 0 0 82 100 7 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
75 83 A E T 3 S+ 0 0 172 100 45 EEEEEEEEEEEEEEEEEEEEEEEEEEEWEEEEEEEEEEEEAAAEEEEEEAEEEEEAWAAWAEHWEEAAAA
76 84 A E T 3 S- 0 0 115 100 65 EEEEDEDDEDEDNDEDMEDDMRRDDDDDKKDDNDDDDDDMERRDDNKDKRDDDMMRDRRDRKEEDNRRRR
77 85 A R < 0 0 199 100 5 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
78 86 A I 0 0 173 75 27 IIIIILILLLLIILLILLLILIIIIIILIILLILLLILLLL II ILI VMLLL L L LIVL
## ALIGNMENTS 71 - 99
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 9 A R 0 0 298 77 12 KKR RR RRR R R RRRRRRRRRR
2 10 A H - 0 0 159 99 8 DDHHHHHHSHHHHHHHHHHHHHHHHHHHH
3 11 A E - 0 0 135 99 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 12 A L + 0 0 38 99 4 LLLLLLLLLLLLLLLLLLILLLLLLLLLL
5 13 A I S S+ 0 0 111 99 31 IIVIIAIIIICIIIIVIIINIVCANCLLN
6 14 A G S S+ 0 0 31 99 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
7 15 A L - 0 0 34 99 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLL
8 16 A S E -AB 25 56A 37 98 74 HHDEEDYR.PPEEPEDESFCSPHDPHHHP
9 17 A V E -AB 24 55A 0 99 54 TTCIAVAI.AAIIVIVLVTVAVTVVTAAV
10 18 A R E -AB 23 54A 161 99 67 TTEQEEEK.RRKKDKEKEKRRRRTRRRRR
11 19 A I E - B 0 53A 10 100 15 IIVVVVVIDVVVVVVVVVVVVVVVVVVVV
12 20 A A E S- 0 0A 76 100 66 KKVIVVFIVSAISVSTVIIVSVATVAAAV
13 21 A R E - B 0 52A 128 99 75 EEARDAEESAANNENDDQNAAEADEAAAE
14 22 A S - 0 0 9 99 60 CCASSASYVAASSSSASCSAASAASADDS
15 23 A V S S+ 0 0 65 100 73 SSSTTATPLTDTTTTPSTNDTPDSDDTTD
16 24 A H S >> S- 0 0 99 100 43 DDNNNNNDSNDNNNNNNNNSNDNNDNDDD
17 25 A R T 34 S+ 0 0 214 99 67 NNPPPPPKAAPPPPPPPKPPASPPDAQQD
18 26 A D T 34 S+ 0 0 160 99 69 SSDAFDKSPDSSSLSDSQSDDSSDATSSA
19 27 A I T X4 S+ 0 0 22 99 60 VVVLQALLFLLLLLLLLLLSLQLLRLRRR
20 28 A Q T 3< S+ 0 0 103 100 64 TTIIIIIVSVVTIDIVIIEVVVTVETVVE
21 29 A G T 3 S+ 0 0 45 100 25 GGGGGGNGGGGGGNGGGGEGGGGGGGGGG
22 30 A I < - 0 0 35 100 39 TTIIIIILIITIIIIILKIIIIIILIIIL
23 31 A S E +A 10 0A 81 99 71 SSSRRACTSDQRRNRACKRADAEGEEAAE
24 32 A G E -A 9 0A 21 100 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
25 33 A R E -A 8 0A 102 99 73 EETRFTRLRTRRRVRRTVKRTRRRRRRRR
26 34 A V + 0 0 0 100 6 IIVVIVVVVVVVVVVVVIVVVVVVVVVVV
27 35 A V - 0 0 22 100 25 VVVILVIIVVVIIRIHIVVVVVVRVVVVV
28 36 A D E -D 35 0B 75 100 51 DDMDDTDDDNSNNDNDDDGSDSRDIRDDI
29 37 A E E -D 34 0B 90 100 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE
30 38 A T E > -D 33 0B 29 99 7 TTTTTTTTTTTTTTTTTTTSTTTTTTTTT
31 39 A R T 3 S+ 0 0 76 100 67 KKTKYTRQKAKKKKKMKRKEATKMTKMMT
32 40 A N T 3 S+ 0 0 80 99 39 NNQNKKNKNKSNNNNRKNNKKNNRNNQQN
33 41 A T E < -DE 30 47B 26 100 42 TTMLTTMTTTTMMTMTTTMTTTTTTTTTT
34 42 A L E -DE 29 46B 0 100 14 FFLLLLLLFLLLLLLLLLLLLLLLLLVVL
35 43 A R E -DE 28 45B 82 99 74 RRTIVGILTSRVVIVLLTIVSVSLSSVVS
36 44 A I E + E 0 44B 0 99 19 IILIIVIIIIVVVIVVIIVIIIVVIVLLI
37 45 A E E - E 0 43B 68 99 40 KKEEGEEEEEEEEVEAEEEREEEAEERRE
38 46 A M E >> - E 0 42B 23 99 83 VVGNYGTT.RTNNTNTVSTDRDTAVTTTV
39 47 A D T 34 S+ 0 0 138 99 71 NNASPTENSGDSSDSGekDTgAdSraAAr
40 48 A D T 34 S- 0 0 114 72 69 ...GG.DSA.SQE.E.ilD.r.t.ea..e
41 49 A G T <4 S+ 0 0 61 99 66 DDDPRDTGGGTSSNSDYYK.TSPDSTSSS
42 50 A R E < -E 38 0B 151 100 71 KKRRRRHRTRRRRNRGKKNRWGAGRAGGR
43 51 A E E +E 37 0B 145 91 72 EEVEKVERETTEENEVEEEDQTAVVAVVV
44 52 A I E -E 36 0B 75 96 79 KKWLRWKVRWKLLKLKKFKKVKKKVKAAV
45 53 A T E -E 35 0B 66 100 83 TTHKRHMRMQQKKMKQLQMRPRQQMQQQM
46 54 A V E -E 34 0B 0 99 17 IIVIVVVVVVVIIVIVIIVVKVVVVVVVV
47 55 A P E -E 33 0B 40 100 46 AAPPFPPLPPPPPPPPQPPPAPPPPPPPP
48 56 A K > + 0 0 9 100 2 KKKKKKKKKKKKKKKKKKKKTKKKKKKKK
49 57 A G T 3 S- 0 0 28 100 71 KKDASDNASAAAAAAADDSSAGAASAKKS
50 58 A I T 3 S+ 0 0 73 100 79 NNSDQAGNGTGDDNDEVIGGTGGGGGGGG
51 59 A A < - 0 0 0 100 56 TTASVATGNAASSASTSASTVRATSAAAS
52 60 A V E +B 13 0A 16 100 68 LLTEKTTVETTEENETVVTTERTTVTTTV
53 61 A F E -BC 11 65A 1 100 6 FFFFLFFFFVFFFFFFFFFFFLFFFFFFF
54 62 A H E -BC 10 64A 71 99 83 EEALRRVQREELVVVRQQLETEEREEEEE
55 63 A F E -BC 9 63A 3 100 15 FFFFVFFFFFFFFFFFFFFFLFFFFFFFF
56 64 A R E -BC 8 62A 120 100 80 EEDRWDHMTTDRRKREKDHRSRAAAARRA
57 65 A T E >> - C 0 61A 19 99 35 YYLILLLLYLLIIVILVIILSLLLILLLI
58 66 A P T 34 S+ 0 0 122 99 65 NNspPpppQStppppdPthdDvddtgttt
59 67 A Q T 34 S- 0 0 152 87 57 ..esDdaeNSeeeesdDege.aeaeeaae
60 68 A G T <4 S+ 0 0 67 89 51 GG.dGsd.EDsggvdsGltg.gdggdggd
61 69 A E E < -C 57 0A 92 92 79 EE.TQRQ.QDAtiKIVTFEaDavrqvaaq
62 70 A L E +C 56 0A 105 96 89 KKTFVSRKIPFFFHFAIKQYPYHAPHYYP
63 71 A V E -C 55 0A 59 100 23 IIVVVVVVDAVVVVVVVVVVAVVVAVVVA
64 72 A E E -C 54 0A 120 99 80 LLLKKRKIIATKKKKVEKKTATTIETTTE
65 73 A I E -C 53 0A 45 100 25 IIVIIVIIETVIIVIVIIVVTVVVTVVVT
66 74 A D + 0 0 45 100 50 DDDQDRFRGDEQQNQEDDNDDDEEEEDDE
67 75 A G S S+ 0 0 0 100 5 GGGGGGGGSGGGGGGGGGGGGGGGQGGGQ
68 76 A R S S+ 0 0 147 100 77 CCDNRSTVKETNNKNEKNNDEDEDSEGGS
69 77 A A S S+ 0 0 86 100 86 KKRLYNLQLLRLLLLRILLRLIRRDRRRD
70 78 A L + 0 0 101 100 16 LLLLLLLILVLLLLLLLLLLVLLLVLLLV
71 79 A V + 0 0 71 100 47 TTVLLVLLHVLLLLLVLILLVLVLAVLLA
72 80 A A - 0 0 63 99 62 YYASGASG.TASSSSANGSSTSAADASSD
73 81 A R + 0 0 107 100 36 RRRQRRQRRVPQQQQRRRQRVRTRRTRRR
74 82 A P S > S+ 0 0 82 100 7 PPPPPPPPPDPPPPPPPPPPDPPPAPPPA
75 83 A E T 3 S+ 0 0 172 100 45 EEAEEAEEEGAEEEEAEEEAGAAAGAEEG
76 84 A E T 3 S- 0 0 115 100 65 DDRNERNDDNRNNSNLDDNRELRRERRRE
77 85 A R < 0 0 199 100 5 RRRRRRRRRRRRRRRRRRRRRRRRGRRRG
78 86 A I 0 0 173 75 27 II IL VLML II I ILI L V V
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 9 A 0 0 0 0 0 5 0 0 0 0 0 0 0 5 86 3 1 0 0 0 77 0 0 0.591 19 0.87
2 10 A 0 0 0 0 0 0 0 0 0 0 2 0 0 96 0 0 0 0 0 2 99 0 0 0.197 6 0.92
3 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 99 0 0 0.000 0 1.00
4 12 A 0 92 3 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.334 11 0.95
5 13 A 17 2 70 0 0 0 0 0 2 0 0 1 3 0 2 0 0 0 3 0 99 0 0 1.049 35 0.69
6 14 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.000 0 1.00
7 15 A 0 97 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 1 0 0.155 5 0.98
8 16 A 1 0 0 1 1 0 1 1 1 8 11 2 1 7 5 12 2 12 8 24 98 0 0 2.340 78 0.25
9 17 A 52 8 8 1 0 0 0 0 13 0 0 9 9 0 0 0 0 0 0 0 99 0 0 1.497 49 0.45
10 18 A 0 4 0 0 0 0 0 0 1 0 6 4 0 0 26 14 1 41 0 2 99 0 0 1.594 53 0.32
11 19 A 63 1 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 100 0 0 0.751 25 0.84
12 20 A 40 6 13 0 1 0 0 1 15 0 6 10 0 0 1 4 0 2 1 0 100 1 0 1.875 62 0.34
13 21 A 0 0 0 0 0 0 1 2 21 0 10 0 0 4 12 11 5 14 10 9 99 1 0 2.192 73 0.25
14 22 A 3 0 0 0 0 0 7 2 35 0 43 1 4 1 0 0 0 0 0 3 99 0 0 1.430 47 0.40
15 23 A 6 4 0 0 0 0 0 0 2 12 26 31 1 0 3 6 1 0 1 7 100 0 0 1.942 64 0.27
16 24 A 0 0 0 0 1 0 0 0 0 0 4 1 0 16 0 0 0 0 55 23 100 1 0 1.181 39 0.57
17 25 A 0 1 0 0 1 0 0 5 5 45 7 1 0 0 6 14 3 4 5 2 99 0 0 1.898 63 0.33
18 26 A 0 2 0 0 2 0 1 11 10 2 32 3 0 1 2 2 1 5 3 22 99 0 0 2.071 69 0.31
19 27 A 7 51 4 9 3 0 1 0 6 0 3 0 0 4 4 0 7 0 1 0 99 0 0 1.801 60 0.40
20 28 A 29 5 34 0 0 0 0 0 4 0 2 6 0 0 3 3 5 4 4 1 100 0 0 1.915 63 0.35
21 29 A 0 2 0 0 0 0 0 83 0 0 7 0 0 0 2 0 0 1 3 2 100 0 0 0.727 24 0.75
22 30 A 5 16 63 1 1 0 0 0 0 0 0 10 0 0 0 4 0 0 0 0 100 1 0 1.185 39 0.60
23 31 A 0 0 0 0 0 0 0 2 6 0 26 2 3 2 10 26 1 16 3 2 99 0 0 1.972 65 0.28
24 32 A 0 0 0 0 0 0 0 99 0 0 0 1 0 0 0 0 0 0 0 0 100 1 0 0.056 1 0.98
25 33 A 4 3 2 0 2 0 5 0 1 0 2 17 0 1 46 13 1 2 0 0 99 0 0 1.766 58 0.26
26 34 A 86 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0.405 13 0.93
27 35 A 59 3 32 0 0 0 0 0 2 0 0 1 0 1 2 0 0 0 0 0 100 0 0 1.030 34 0.74
28 36 A 0 0 2 9 0 0 1 1 1 0 5 1 0 0 2 0 0 0 12 66 100 0 0 1.236 41 0.49
29 37 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 100 1 0 0.000 0 1.00
30 38 A 0 0 0 0 0 0 0 0 0 0 5 95 0 0 0 0 0 0 0 0 99 0 0 0.200 6 0.92
31 39 A 0 5 0 5 0 0 2 0 2 0 0 15 0 0 41 25 2 3 0 0 100 1 0 1.636 54 0.33
32 40 A 0 0 0 0 0 0 0 0 0 0 1 0 0 1 2 17 11 0 68 0 99 0 0 0.983 32 0.61
33 41 A 0 3 0 22 0 0 0 0 0 0 0 73 0 0 0 0 0 0 2 0 100 0 0 0.746 24 0.58
34 42 A 3 78 11 2 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0.789 26 0.85
35 43 A 33 11 8 0 1 0 0 2 1 0 6 21 0 0 7 8 0 0 1 0 99 1 0 1.921 64 0.26
36 44 A 20 14 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.876 29 0.81
37 45 A 3 2 3 0 0 0 0 1 3 0 0 0 0 1 6 2 1 75 0 3 99 1 0 1.108 36 0.59
38 46 A 12 7 1 2 1 0 1 15 1 0 2 25 0 0 5 14 2 1 5 5 99 1 0 2.274 75 0.17
39 47 A 1 1 0 0 2 0 0 12 15 3 12 3 0 0 3 5 2 20 7 13 99 28 10 2.294 76 0.28
40 48 A 0 3 1 0 0 0 0 8 6 0 11 1 0 0 7 7 1 11 18 25 72 0 0 2.160 72 0.30
41 49 A 4 0 1 1 1 0 2 40 0 2 10 6 0 0 4 2 0 2 8 16 99 0 0 1.979 66 0.33
42 50 A 7 0 0 1 0 5 1 10 2 0 1 2 1 2 41 18 1 4 4 0 100 9 0 1.963 65 0.29
43 51 A 20 3 2 0 0 0 0 0 2 1 0 5 0 0 10 1 1 52 1 1 91 0 0 1.578 52 0.28
44 52 A 18 5 17 1 1 13 0 0 4 0 0 0 0 0 5 36 0 0 0 0 96 0 0 1.768 59 0.20
45 53 A 5 3 12 9 0 0 0 0 1 1 0 18 1 10 21 7 12 0 0 0 100 1 0 2.172 72 0.16
46 54 A 59 3 37 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 0.833 27 0.82
47 55 A 5 2 0 2 7 0 0 0 4 76 0 0 0 0 0 0 3 1 0 0 100 0 0 0.981 32 0.54
48 56 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 99 0 0 0 0 100 0 0 0.056 1 0.98
49 57 A 0 0 1 1 2 0 0 8 23 1 11 0 0 0 3 12 0 8 4 26 100 0 0 2.040 68 0.29
50 58 A 12 1 18 0 2 0 1 28 1 0 11 3 1 2 0 0 1 1 12 6 100 0 0 2.124 70 0.21
51 59 A 7 0 0 0 0 0 0 6 45 0 29 8 0 0 1 0 0 0 4 0 100 0 0 1.450 48 0.44
52 60 A 28 4 14 0 0 0 0 0 0 0 2 34 1 0 1 3 0 12 1 0 100 0 0 1.703 56 0.31
53 61 A 1 4 3 0 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 1 0 0.357 11 0.94
54 62 A 12 8 3 0 0 0 0 1 7 0 2 2 0 6 22 3 6 27 0 0 99 0 0 2.091 69 0.16
55 63 A 3 3 6 1 86 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 100 0 0 0.601 20 0.84
56 64 A 0 1 0 4 1 2 0 0 10 0 2 14 0 6 17 9 6 17 1 10 100 1 0 2.316 77 0.19
57 65 A 4 64 13 0 8 0 3 0 0 0 1 6 0 0 0 0 1 0 0 0 99 1 0 1.256 41 0.64
58 66 A 1 1 0 0 0 0 1 4 3 45 11 7 0 1 0 4 1 6 3 11 99 13 37 1.907 63 0.34
59 67 A 0 0 0 0 0 0 0 7 8 0 6 9 0 1 0 2 6 26 8 26 87 10 23 1.979 66 0.43
60 68 A 7 1 0 0 0 0 0 56 1 2 3 2 6 0 1 0 0 3 3 13 89 0 11 1.602 53 0.48
61 69 A 13 1 2 0 1 0 0 3 7 0 0 15 3 0 3 12 10 27 0 2 92 4 0 2.165 72 0.20
62 70 A 6 7 4 0 5 1 8 0 4 4 4 11 0 4 9 28 2 0 0 0 96 0 0 2.342 78 0.11
63 71 A 78 1 11 1 0 0 0 0 7 0 0 0 0 0 0 1 0 0 0 1 100 1 0 0.807 26 0.76
64 72 A 8 8 4 0 0 0 0 0 2 0 1 11 0 0 11 17 0 23 0 14 99 0 0 2.068 69 0.19
65 73 A 45 2 47 0 0 0 0 0 1 0 0 4 0 0 0 0 0 1 0 0 100 0 0 1.013 33 0.75
66 74 A 0 0 2 0 1 0 0 2 3 1 0 0 0 1 4 10 4 11 7 54 100 0 0 1.649 55 0.50
67 75 A 0 0 0 0 0 0 0 97 0 0 1 0 0 0 0 0 2 0 0 0 100 0 0 0.154 5 0.95
68 76 A 3 0 1 0 1 0 0 4 0 0 18 2 2 0 24 8 0 10 12 15 100 0 0 2.105 70 0.23
69 77 A 6 31 13 0 0 0 1 0 7 0 2 2 0 0 22 3 3 4 3 3 100 0 0 2.068 69 0.14
70 78 A 4 80 15 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0.638 21 0.84
71 79 A 44 23 18 1 0 0 0 0 3 0 4 3 0 1 0 0 0 2 1 0 100 1 0 1.563 52 0.52
72 80 A 0 2 4 1 0 0 3 33 28 0 21 3 0 1 0 0 0 0 1 2 99 0 0 1.691 56 0.37
73 81 A 2 0 0 0 0 0 0 0 2 3 0 2 0 0 75 0 16 0 0 0 100 0 0 0.849 28 0.63
74 82 A 0 0 0 0 0 0 0 0 2 96 0 0 0 0 0 0 0 0 0 2 100 0 0 0.196 6 0.93
75 83 A 0 0 0 0 0 4 0 4 21 0 0 0 0 1 0 0 0 70 0 0 100 0 0 0.881 29 0.54
76 84 A 0 2 0 5 0 0 0 0 0 0 1 0 0 0 22 5 0 17 11 37 100 0 0 1.669 55 0.34
77 85 A 0 0 0 0 0 0 0 2 0 0 0 0 0 0 98 0 0 0 0 0 100 0 0 0.098 3 0.94
78 86 A 7 45 45 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75 0 0 0.994 33 0.73
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
19 40 64 1 fGs
31 59 67 3 sDLDt
32 59 67 3 sDLDt
34 59 67 3 kNSGd
35 59 67 2 eFDd
36 59 67 2 dFDd
38 40 48 1 fDn
42 40 48 12 gGGEPTGPRAGERa
46 58 68 3 pVGSg
46 59 72 3 gCSPa
48 59 67 1 eSe
48 60 69 1 eNv
50 58 67 1 sTe
53 59 65 2 eSEn
65 58 68 2 pNKe
66 58 68 3 pARLs
66 59 72 4 sGEHAe
67 58 67 1 sTe
68 58 67 1 sTe
69 58 67 1 sTe
70 58 67 1 sTe
73 58 67 1 sTe
74 58 72 3 pTELs
74 59 76 6 sEKGRRSd
76 58 68 3 pAEGd
76 59 72 2 dSEs
77 58 68 3 pSSSa
77 59 72 2 aDHd
78 58 68 2 pNKe
81 59 68 1 tGe
81 60 70 4 eSETDs
82 58 72 1 pAe
82 59 74 4 eLSEKg
82 60 79 4 gRRSDt
83 58 72 1 pAe
83 59 74 4 eLSEKg
83 60 79 4 gRRSDi
84 57 67 1 pVe
84 58 69 6 eFGDKYLv
85 58 68 3 pAELs
85 59 72 6 sEKGRRSd
86 58 65 3 dEAAd
86 59 69 2 dNGs
87 39 48 18 eEKVLSDDLGSNQQNHFNLi
88 40 48 21 kVVNSSVHIEQKNENLDDDVQYl
88 59 88 2 tTSe
88 60 91 1 eGl
89 58 68 3 hLLRg
89 59 72 4 gNTRVt
90 57 66 3 dATDe
90 58 70 6 eAAGPRKg
90 59 77 12 gAETAGKHARDPVa
91 40 49 1 gSr
92 58 67 3 vDEAa
92 59 71 6 aARRKGAg
92 60 78 16 gTASEPDSRGGATGEDAa
93 40 49 7 dSTDDSGAt
93 59 75 1 dGe
93 60 77 5 eSVAPTd
93 61 83 11 dVTPADPKAAETv
94 58 65 3 dECEa
94 59 69 6 aRRDSDDg
94 60 76 5 gSGKRPr
95 40 49 3 rRNGe
95 59 71 1 tDe
95 60 73 4 eAADSg
95 61 78 12 gKESGTTSKLADTq
96 40 49 5 aATAGGa
96 59 73 1 gGe
96 60 75 5 eSVAPAd
96 61 81 11 dVTPADPEAAETv
97 58 68 3 tDEAa
97 59 72 6 aAPDNGVg
97 60 79 18 gTAFKPAGGETRQTTGESVa
98 58 68 3 tDEAa
98 59 72 6 aAPDNGVg
98 60 79 18 gTAFKPAGGETRQTTGESVa
99 40 49 3 rRDGe
99 59 71 1 tDe
99 60 73 2 eAAd
99 61 76 14 dSAKESGTTSKLANTq
//