Complet list of 1nb1 hssp file
Complete list of 1nb1.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1NB1
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-04
HEADER ANTIBIOTIC 01-DEC-02 1NB1
COMPND MOL_ID: 1; MOLECULE: KALATA B1; CHAIN: A; FRAGMENT: RESIDUES 1-29
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: OLDENLANDIA AFFINIS; ORGANISM_TAXID: 6
AUTHOR K.J.ROSENGREN,N.L.DALY,M.R.PLAN,C.WAINE,D.J.CRAIK
DBREF 1NB1 A 1 28 UNP P56254 KAB1_OLDAF 93 120
SEQLENGTH 29
NCHAIN 1 chain(s) in 1NB1 data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B6E618_OLDAF 1.00 1.00 1 28 93 120 28 0 0 121 B6E618 Kalata B1 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
2 : CYO22_VIOOD 1.00 1.00 1 25 5 29 25 0 0 29 P85185 Cycloviolacin-O22 OS=Viola odorata PE=1 SV=1
3 : D8WS41_OLDAF 1.00 1.00 1 28 75 102 28 0 0 106 D8WS41 Cyclotide Oak10 (Fragment) OS=Oldenlandia affinis GN=oak10 PE=2 SV=1
4 : KAB1_OLDAF 1ZNU 1.00 1.00 1 28 93 120 28 0 0 124 P56254 Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE=1 SV=3
5 : CYO12_VIOAR 0.96 1.00 1 25 5 29 25 0 0 29 P83835 Varv peptide E OS=Viola arvensis PE=1 SV=1
6 : CYO12_VIOOD 0.96 1.00 1 25 5 29 25 0 0 29 P83836 Cycloviolacin-O12 OS=Viola odorata PE=1 SV=1
7 : KAB4_OLDAF 1ZNU 0.96 1.00 1 25 5 29 25 0 0 29 P83938 Kalata-B4 OS=Oldenlandia affinis PE=1 SV=2
8 : KABS_OLDAF 0.96 1.00 1 25 5 29 25 0 0 29 P58458 Kalata-S OS=Oldenlandia affinis PE=1 SV=1
9 : VARA_VIOAR 0.96 1.00 1 25 5 29 25 0 0 29 P58446 Varv peptide A OS=Viola arvensis PE=1 SV=1
10 : VARA_VIOBI 0.96 1.00 1 25 5 29 25 0 0 29 P85525 Cyclotide varv-A OS=Viola biflora PE=1 SV=1
11 : VARC_VIOAR 0.96 1.00 1 25 5 29 25 0 0 29 P58448 Varv peptide C OS=Viola arvensis PE=1 SV=1
12 : VARD_VIOAR 0.92 1.00 1 25 5 29 25 0 0 29 P58449 Varv peptide D OS=Viola arvensis PE=1 SV=1
13 : CYO21_VIOOD 0.88 0.92 1 25 5 29 25 0 0 29 P85184 Cycloviolacin-O21 OS=Viola odorata PE=1 SV=1
14 : CYVB_VIOBI 0.88 0.92 1 25 5 29 25 0 0 29 P85240 Cyclotide vibi-B OS=Viola biflora PE=1 SV=1
15 : A5YRZ3_9ROSI 0.86 1.00 1 29 125 153 29 0 0 153 A5YRZ3 Cyclotide 6 OS=Viola baoshanensis PE=2 SV=1
16 : A5YRZ4_9ROSI 0.86 1.00 1 29 179 207 29 0 0 207 A5YRZ4 Cyclotide 7 OS=Viola baoshanensis PE=2 SV=1
17 : B5B3Z3_9ROSI 0.86 1.00 1 29 125 153 29 0 0 153 B5B3Z3 Cyclotide 6b OS=Viola baoshanensis PE=2 SV=1
18 : B5B3Z4_9ROSI 0.86 1.00 1 29 125 153 29 0 0 153 B5B3Z4 Cyclotide 6c OS=Viola baoshanensis PE=2 SV=1
19 : B5B3Z5_9ROSI 0.86 1.00 1 29 125 153 29 0 0 153 B5B3Z5 Cyclotide 6d OS=Viola baoshanensis PE=2 SV=1
20 : B5B3Z6_9ROSI 0.86 1.00 1 29 179 207 29 0 0 207 B5B3Z6 Cyclotide 7b OS=Viola baoshanensis PE=2 SV=1
21 : B5B3Z7_9ROSI 0.86 1.00 1 29 179 207 29 0 0 207 B5B3Z7 Cyclotide 7c OS=Viola baoshanensis PE=2 SV=1
22 : B6E615_VIOOD 0.86 1.00 1 29 179 207 29 0 0 207 B6E615 Cycloviolacin O8 OS=Viola odorata PE=4 SV=1
23 : D8WS37_OLDAF 0.86 0.90 1 28 66 94 29 1 1 153 D8WS37 Cyclotide Oak6 (Fragment) OS=Oldenlandia affinis GN=oak6 PE=2 SV=1
24 : VARA_VIOOD 1WN4 0.86 1.00 1 29 179 207 29 0 0 207 Q5USN7 Varv peptide A/Kalata-B1 OS=Viola odorata GN=Vok1 PE=1 SV=1
25 : CYH3_VIOHE 0.85 0.85 1 25 5 30 26 1 1 30 P85232 Cycloviolacin-H3 OS=Viola hederacea PE=1 SV=1
26 : CYO24_VIOOD 0.85 0.88 1 25 5 30 26 1 1 30 P85187 Cycloviolacin-O24 OS=Viola odorata PE=1 SV=1
27 : CYVA_VIOBI 0.84 0.92 1 25 5 29 25 0 0 29 P85239 Cyclotide vibi-A OS=Viola biflora PE=1 SV=1
28 : CYVD_VIOBI 0.84 0.88 1 25 5 29 25 0 0 29 P85242 Cyclotide vibi-D OS=Viola biflora PE=1 SV=1
29 : B6E620_OLDAF 0.83 0.90 1 28 126 154 29 1 1 155 B6E620 Kalata B6 and kalata B3 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
30 : KAB3_OLDAF 1WN8 0.83 0.90 1 28 126 154 29 1 1 158 P58455 Kalata-B3/B6 OS=Oldenlandia affinis GN=OAK2 PE=1 SV=1
31 : M9T7B1_VIOOD 0.83 0.97 1 29 74 102 29 0 0 102 M9T7B1 Cyclotide C (Fragment) OS=Viola odorata GN=vocC PE=2 SV=1
32 : KAB10_OLDAF 0.81 0.92 1 25 5 30 26 1 1 30 P85128 Kalata-B10 OS=Oldenlandia affinis PE=1 SV=1
33 : KAB13_OLDAF 0.81 0.88 1 25 5 30 26 1 1 30 P85131 Kalata-B13 OS=Oldenlandia affinis PE=1 SV=1
34 : VARG_VIOAR 0.81 0.88 1 25 5 30 26 1 1 30 P58452 Varv peptide G OS=Viola arvensis PE=1 SV=1
35 : VARH_VIOAR 0.81 0.88 1 25 5 30 26 1 1 30 P58453 Varv peptide H OS=Viola arvensis PE=1 SV=1
36 : CYVC_VIOBI 0.80 0.88 1 25 5 29 25 0 0 29 P85241 Cyclotide vibi-C OS=Viola biflora PE=1 SV=1
37 : VARF_VIOAR 2K7G 0.80 0.88 1 25 5 29 25 0 0 29 P58451 Varv peptide F OS=Viola arvensis PE=1 SV=1
38 : B6E619_OLDAF 0.79 0.82 1 28 80 107 28 0 0 107 B6E619 Kalata B7 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
39 : KAB7_OLDAF 2M9O 0.79 0.82 1 28 80 107 28 0 0 111 P58457 Kalata-B7 OS=Oldenlandia affinis GN=OAK3 PE=1 SV=1
40 : A9P3R7_9ROSI 0.78 0.85 1 27 65 91 27 0 0 93 A9P3R7 Cyclotide protein Mra26 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
41 : CYO23_VIOOD 0.78 0.85 1 25 5 31 27 1 2 31 P85186 Cycloviolacin-O23 OS=Viola odorata PE=1 SV=1
42 : D2WPK8_9ROSI 0.78 0.85 1 27 74 100 27 0 0 102 D2WPK8 Cyclotide E (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
43 : KAB14_OLDAF 0.77 0.88 1 25 5 30 26 1 1 30 P85132 Kalata-B14 OS=Oldenlandia affinis PE=1 SV=1
44 : VARB_VIOAR 0.77 0.88 1 25 5 30 26 1 1 30 P58447 Varv peptide B OS=Viola arvensis PE=1 SV=1
45 : VHL2_VIOHE 2KUK 0.77 0.77 1 25 5 30 26 1 1 30 P85231 Leaf cyclotide 2 OS=Viola hederacea PE=1 SV=1
46 : B6E621_OLDAF 0.76 0.97 1 29 71 99 29 0 0 210 B6E621 Kalata B2 protein OS=Oldenlandia affinis PE=4 SV=1
47 : KAB11_OLDAF 0.76 0.92 1 25 5 29 25 0 0 29 P85129 Kalata-B11 OS=Oldenlandia affinis PE=1 SV=1
48 : KAB2_OLDAF 1PT4 0.76 0.97 1 29 71 99 29 0 0 210 P58454 Kalata-B2 OS=Oldenlandia affinis GN=OAK4 PE=1 SV=1
49 : Q30CA6_9ROSI 0.72 0.86 1 29 1 29 29 0 0 35 Q30CA6 Cyclotide B (Fragment) OS=Hybanthus monopetalus PE=2 SV=1
50 : VODN_VIOOD 0.72 0.80 1 25 5 29 25 0 0 29 P83838 Vodo peptide N OS=Viola odorata PE=1 SV=1
51 : K9Y490_9POAL 0.71 0.75 1 24 55 78 24 0 0 78 K9Y490 Panitide L1 OS=Steinchisma laxum PE=4 SV=1
52 : K9Y572_9POAL 0.71 0.83 1 24 55 78 24 0 0 78 K9Y572 Panitide L6 OS=Steinchisma laxum PE=4 SV=1
53 : A9P3R3_9ROSI 0.70 0.85 1 27 66 92 27 0 0 94 A9P3R3 Cyclotide protein Mra25 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
54 : A9P3R4_9ROSI 0.70 0.85 1 27 65 91 27 0 0 93 A9P3R4 Cyclotide protein Mra24 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
55 : KAB9_OLDAF 0.69 0.81 1 25 6 31 26 1 1 31 P85127 Kalata-B9 OS=Oldenlandia affinis PE=1 SV=1
56 : I0B6F3_9GENT 0.68 0.79 1 27 46 73 28 1 1 78 I0B6F3 Cyclotide chassatide C4 OS=Chassalia chartacea PE=4 SV=1
57 : KAB15_OLDAF 0.68 0.92 1 25 5 29 25 0 0 29 P85133 Kalata-B15 OS=Oldenlandia affinis PE=1 SV=1
58 : VODM_VIOOD 0.68 0.76 1 25 5 29 25 0 0 29 P83839 Vodo peptide M OS=Viola odorata PE=1 SV=1
59 : CYCN_CLITE 0.64 0.80 1 25 5 29 25 0 0 29 P86900 Cyclotide cter-N OS=Clitoria ternatea PE=1 SV=1
60 : CYO15_VIOOD 0.64 0.76 1 25 5 29 25 0 0 29 P85178 Cycloviolacin-O15 OS=Viola odorata PE=1 SV=1
61 : F8W671_CLITE2LAM 0.64 0.80 1 25 5 29 25 0 0 29 F8W671 Cyclotide Cter M OS=Clitoria ternatea PE=1 SV=1
62 : CYO16_VIOOD 0.62 0.75 1 24 4 27 24 0 0 29 P85179 Cycloviolacin-O16 OS=Viola odorata PE=1 SV=1
63 : K9Y2Z0_9POAL 0.62 0.67 1 24 56 79 24 0 0 79 K9Y2Z0 Panitide L2 OS=Steinchisma laxum PE=4 SV=1
64 : KAB8_OLDAF 2B38 0.62 0.77 1 25 6 31 26 1 1 31 P85175 Kalata-B8 OS=Oldenlandia affinis PE=1 SV=1
65 : M7ZIA4_TRIUA 0.62 0.73 1 25 60 85 26 1 1 90 M7ZIA4 Uncharacterized protein OS=Triticum urartu GN=TRIUR3_26311 PE=4 SV=1
66 : Q30CA3_9ROSI 0.62 0.79 1 28 1 29 29 1 1 30 Q30CA3 Cyclotide A (Fragment) OS=Hybanthus calycinus PE=2 SV=1
67 : CYCM_CLITE 2LAM 0.59 0.78 1 27 29 55 27 0 0 127 P86899 Cyclotide cter-M OS=Clitoria ternatea PE=1 SV=1
68 : G1CWH1_CLITE 0.59 0.78 1 27 34 60 27 0 0 132 G1CWH1 Cyclotide cliotide T2 OS=Clitoria ternatea PE=2 SV=1
69 : G1CWH2_CLITE 0.59 0.78 1 27 29 55 27 0 0 127 G1CWH2 Cyclotide cliotide T3 OS=Clitoria ternatea PE=2 SV=1
70 : CYO14_VIOOD 2GJ0 0.58 0.77 1 25 6 31 26 1 1 31 P85177 Cycloviolacin-O14 OS=Viola odorata PE=1 SV=1
71 : K9Y385_9POAL 0.58 0.75 1 24 66 89 24 0 0 89 K9Y385 Panitide L4 OS=Steinchisma laxum PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A a 0 0 20 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
2 2 A G + 0 0 86 72 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
3 3 A E - 0 0 30 72 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A T - 0 0 84 72 15 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTTTTTTSTTTSSTTTTTTTTTSTS
5 5 A b > + 0 0 0 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
6 6 A V T 3 S+ 0 0 82 72 63 VVVVVVVVVVVVVFVVVVVVVVFVFFFFFFVFFFFATTTVFVFFFFFFVTVVTLVFFFVFTFVLAVTVTF
7 7 A G T 3 S- 0 0 68 72 82 GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGFLLLGGKGGTGGGTLLLLLLTGTLTLTLLLVLQLK
8 8 A G S < S+ 0 0 49 72 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGSDGGGG
9 9 A T - 0 0 97 72 42 TTTTTTTTTTTSSTTTTTTTTTTTTTTRTTTTTTTSTTTKTKTTTTTTTKTTETTISKTKTKRTgtTETK
10 10 A c - 0 0 38 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
11 11 A N + 0 0 144 72 65 NNNNNNNNNNNNYNNNNNNNNNNNNNNNNNNNNNNYYYYYNNNNYNNNYYYYYYYFYYYYYYYYNYYYYY
12 12 A T S > S- 0 0 35 72 9 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVTTTTTVTVT
13 13 A P T 3 S+ 0 0 126 72 26 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAQQPPPPPNPPPPAPPPPPAPVPPPPPTGKPPPP
14 14 A G T 3 S+ 0 0 63 72 17 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQDGDGNGGKDGDG
15 15 A a E < -A 24 0A 14 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
16 16 A T E -A 23 0A 84 72 55 TTTTSSTSSSSSTTSSSSSSSSASITSTTTSSASSSSTTTTVASTSSSASRSTTTSSSSSSSRTQSSSSS
17 17 A b E +A 22 0A 61 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
18 18 A S E > -A 21 0A 51 72 58 SSSSSSSSSSSSSSSSSSSSSSdSddSSddSsddeSSSSTdSdddTTTDSQASKnnTSTSSSQnAASDSs
19 19 A W T 3 S+ 0 0 172 72 25 WWWWWWWWWWWWWYWWWWWWWWwWwwYYwwWwwwwWWWWWwWwwwWDWWWYYWRywWWAYWYYyWWWWWy
20 20 A P T 3 S+ 0 0 52 72 14 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRPPPLPPPPRPPPPPP
21 21 A V E < S-A 18 0A 54 72 19 VVVVVVVVVVVVVIVVVVVVVVVVVVIIIIVIVVVVVIIVIVVMVIIIVVIIIVVTIVVIIIIVVVIIIL
22 22 A c E -A 17 0A 1 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 23 A T E -A 16 0A 17 72 65 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTITTSSTTKKYTKTSTTTTKYVVTYTTTTLKMKVTIMMKMA
24 24 A R E > S-AB 15 27A 89 72 24 RRRRRRRRRRRRRRRRRRRRRRRRRHRRRRRRRRRRRRRRHKRRRRRRRRRRKKKRRRKKKKRKKRKKKK
25 25 A N T 3 S- 0 0 128 67 19 NNNNNNDNNNNNNNNNNNNNNNNNNNNNDDNDDNNNNNNNNNDNNDDDDN NNDNDNNNN DNNNNNN
26 26 A G T 3 S+ 0 0 71 31 60 G GG SSSSSSSAGA GGS GGS S S SA SS G SHHH
27 27 A L B < S-B 24 0A 81 31 13 L LL LLLLLLLLLL LLL LLL L L LL LL L LIII
28 28 A P 0 0 84 23 43 P PP AAAAAAAAPA PPA PP P PP A
29 29 A V 0 0 72 14 32 MMMMMMMM M M M MI
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A a 0 0 20 72 0 C
2 2 A G + 0 0 86 72 0 G
3 3 A E - 0 0 30 72 0 E
4 4 A T - 0 0 84 72 15 T
5 5 A b > + 0 0 0 72 0 C
6 6 A V T 3 S+ 0 0 82 72 63 L
7 7 A G T 3 S- 0 0 68 72 82 L
8 8 A G S < S+ 0 0 49 72 6 G
9 9 A T - 0 0 97 72 42 T
10 10 A c - 0 0 38 72 0 C
11 11 A N + 0 0 144 72 65 Y
12 12 A T S > S- 0 0 35 72 9 T
13 13 A P T 3 S+ 0 0 126 72 26 P
14 14 A G T 3 S+ 0 0 63 72 17 G
15 15 A a E < -A 24 0A 14 72 0 C
16 16 A T E -A 23 0A 84 72 55 R
17 17 A b E +A 22 0A 61 72 0 C
18 18 A S E > -A 21 0A 51 72 58 T
19 19 A W T 3 S+ 0 0 172 72 25 A
20 20 A P T 3 S+ 0 0 52 72 14 G
21 21 A V E < S-A 18 0A 54 72 19 I
22 22 A c E -A 17 0A 1 72 0 C
23 23 A T E -A 16 0A 17 72 65 L
24 24 A R E > S-AB 15 27A 89 72 24 K
25 25 A N T 3 S- 0 0 128 67 19
26 26 A G T 3 S+ 0 0 71 31 60
27 27 A L B < S-B 24 0A 81 31 13
28 28 A P 0 0 84 23 43
29 29 A V 0 0 72 14 32
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 72 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 8 92 0 0 0 0 0 0 0 0 72 0 0 0.287 9 0.84
5 5 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
6 6 A 47 4 0 0 35 0 0 0 3 0 0 11 0 0 0 0 0 0 0 0 72 0 0 1.198 39 0.36
7 7 A 1 24 0 0 1 0 0 60 0 0 0 10 0 0 0 3 1 0 0 0 72 0 0 1.153 38 0.17
8 8 A 0 0 0 0 0 0 0 96 0 0 1 0 0 0 0 0 0 0 1 1 72 0 0 0.219 7 0.93
9 9 A 0 0 1 0 0 0 0 1 0 0 6 76 0 0 3 10 0 3 0 0 72 0 2 0.911 30 0.57
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
11 11 A 0 0 0 0 1 0 39 0 0 0 0 0 0 0 0 0 0 0 60 0 72 0 0 0.735 24 0.35
12 12 A 4 0 0 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 72 0 0 0.173 5 0.90
13 13 A 1 0 0 0 0 0 0 1 4 86 0 1 0 0 0 1 3 0 1 0 72 0 0 0.658 21 0.74
14 14 A 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 1 1 0 1 6 72 0 0 0.431 14 0.83
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
16 16 A 1 0 1 0 0 0 0 0 6 0 57 29 0 0 4 0 1 0 0 0 72 0 0 1.151 38 0.45
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 4 0 58 10 0 0 0 1 3 1 4 18 72 0 17 1.333 44 0.41
19 19 A 0 0 0 0 0 79 15 0 3 0 0 0 0 0 1 0 0 0 0 1 72 0 0 0.690 23 0.75
20 20 A 0 1 0 0 0 0 0 1 0 94 0 0 0 0 3 0 0 0 0 0 72 0 0 0.272 9 0.86
21 21 A 63 1 33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 72 0 0 0.838 27 0.81
22 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
23 23 A 4 3 3 6 0 0 4 0 1 0 4 65 0 0 0 10 0 0 0 0 72 0 0 1.321 44 0.35
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 76 21 0 0 0 0 72 0 0 0.632 21 0.75
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81 19 67 0 0 0.492 16 0.81
26 26 A 0 0 0 0 0 0 0 32 10 0 48 0 0 10 0 0 0 0 0 0 31 0 0 1.168 38 0.39
27 27 A 0 90 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.318 10 0.87
28 28 A 0 0 0 0 0 0 0 0 48 52 0 0 0 0 0 0 0 0 0 0 23 0 0 0.692 23 0.56
29 29 A 7 0 7 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0.509 16 0.67
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
23 19 84 1 dPw
25 19 23 1 dPw
26 19 23 1 dPw
29 19 144 1 dPw
30 19 144 1 dPw
32 19 23 1 sSw
33 19 23 1 dPw
34 19 23 1 dPw
35 19 23 1 eTw
41 19 23 2 dSSw
43 19 23 1 dPw
44 19 23 1 dPw
45 19 23 1 dPw
55 19 24 1 nTy
56 19 64 1 nPw
64 19 24 1 nKy
65 10 69 1 gGc
66 10 10 1 tRc
70 19 24 1 sKy
//