Complet list of 1myn hssp file
Complete list of 1myn.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1MYN
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER SIGNAL PROTEIN 26-DEC-96 1MYN
COMPND MOL_ID: 1; MOLECULE: DROSOMYCIN; CHAIN: A; ENGINEERED: YES
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; ORGANISM_COMM
AUTHOR C.LANDON,P.SODANO,C.HETRU,J.A.HOFFMANN,M.PTAK
DBREF 1MYN A 1 44 UNP P41964 DMYC_DROME 27 70
SEQLENGTH 44
NCHAIN 1 chain(s) in 1MYN data set
NALIGN 80
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A7UCI3_MUSDO 1.00 1.00 1 44 2 45 44 0 0 45 A7UCI3 Antifungal peptide (Fragment) OS=Musca domestica PE=2 SV=1
2 : B4PGQ0_DROYA 1.00 1.00 1 44 27 70 44 0 0 70 B4PGQ0 GE21361 OS=Drosophila yakuba GN=Dyak\GE21361 PE=4 SV=1
3 : DMYC_DROME 1MYN 1.00 1.00 1 44 27 70 44 0 0 70 P41964 Drosomycin OS=Drosophila melanogaster GN=Drs PE=1 SV=1
4 : Q2UY87_DROSI 1.00 1.00 1 44 27 70 44 0 0 70 Q2UY87 Drs protein OS=Drosophila simulans GN=Drs PE=4 SV=1
5 : Q2UYR5_DROSI 1.00 1.00 1 44 27 70 44 0 0 70 Q2UYR5 Drs protein OS=Drosophila simulans GN=Drs PE=4 SV=1
6 : Q2UYR8_DROSI 1.00 1.00 1 44 27 70 44 0 0 70 Q2UYR8 Drosomycin OS=Drosophila simulans GN=Drs PE=4 SV=1
7 : Q2UYT9_DROSI 1.00 1.00 1 44 27 70 44 0 0 70 Q2UYT9 Drs protein OS=Drosophila simulans GN=Drs PE=4 SV=1
8 : B3NBV9_DROER 0.98 1.00 1 44 27 70 44 0 0 70 B3NBV9 GG15135 OS=Drosophila erecta GN=Dere\GG15135 PE=4 SV=1
9 : B4HTQ1_DROSE 0.98 0.98 1 44 26 69 44 0 0 69 B4HTQ1 GM14562 OS=Drosophila sechellia GN=Dsec\GM14562 PE=4 SV=1
10 : B4HTR2_DROSE 0.98 1.00 1 44 27 70 44 0 0 72 B4HTR2 GM14569 OS=Drosophila sechellia GN=Dsec\GM14569 PE=4 SV=1
11 : B4QPH3_DROSI 0.98 0.98 1 44 26 69 44 0 0 69 B4QPH3 Drosomycin-5 OS=Drosophila simulans GN=dro5 PE=4 SV=1
12 : Q9VZR2_DROME 0.98 0.98 1 44 26 69 44 0 0 69 Q9VZR2 Drosomycin-like 5 OS=Drosophila melanogaster GN=Drsl5 PE=4 SV=1
13 : Q2UYJ4_DROME 0.97 0.97 1 38 26 63 38 0 0 63 Q2UYJ4 Dro5 protein (Fragment) OS=Drosophila melanogaster GN=Drsl5 PE=4 SV=1
14 : Q2UYM0_DROME 0.97 0.97 1 38 26 63 38 0 0 63 Q2UYM0 Dro5 protein (Fragment) OS=Drosophila melanogaster GN=Drsl5 PE=4 SV=1
15 : Q2UYN1_DROME 0.97 0.97 1 38 26 63 38 0 0 63 Q2UYN1 Dro5 protein (Fragment) OS=Drosophila melanogaster GN=Drsl5 PE=4 SV=1
16 : Q2UYT5_DROSI 0.97 0.97 1 38 26 63 38 0 0 63 Q2UYT5 Dro5 protein (Fragment) OS=Drosophila simulans GN=dro5 PE=4 SV=1
17 : B0LUZ3_DROME 0.95 0.95 1 44 26 69 44 0 0 69 B0LUZ3 Drosomycin 5 OS=Drosophila melanogaster PE=4 SV=1
18 : B3M6X7_DROAN 0.95 0.98 1 44 26 69 44 0 0 69 B3M6X7 GF24279 OS=Drosophila ananassae GN=Dana\GF24279 PE=4 SV=1
19 : B3NBU8_DROER 0.95 0.98 1 44 26 69 44 0 0 69 B3NBU8 GG15129 OS=Drosophila erecta GN=Dere\GG15129 PE=4 SV=1
20 : B4PGN9_DROYA 0.95 0.98 1 44 26 69 44 0 0 69 B4PGN9 GE21355 OS=Drosophila yakuba GN=Dyak\GE21355 PE=4 SV=1
21 : B3M6X8_DROAN 0.93 0.98 1 44 26 69 44 0 0 69 B3M6X8 GF10208 OS=Drosophila ananassae GN=Dana\GF10208 PE=4 SV=1
22 : B4HTP9_DROSE 0.89 0.95 1 44 27 70 44 0 0 70 B4HTP9 GM14560 OS=Drosophila sechellia GN=Dsec\GM14560 PE=4 SV=1
23 : B7FNN9_DROME 0.89 0.95 1 44 32 75 44 0 0 75 B7FNN9 LP14083p (Fragment) OS=Drosophila melanogaster GN=dro2-RA PE=2 SV=1
24 : Q2UYB4_DROME 0.89 0.95 1 44 27 70 44 0 0 70 Q2UYB4 Dro2 protein OS=Drosophila melanogaster GN=Drsl2 PE=4 SV=1
25 : Q2UYU5_DROSI 0.89 0.95 1 44 27 70 44 0 0 70 Q2UYU5 Dro2 protein OS=Drosophila simulans GN=dro2 PE=4 SV=1
26 : Q7YXH9_DROME 0.89 0.95 1 44 27 70 44 0 0 70 Q7YXH9 Dro2 protein OS=Drosophila melanogaster GN=Drsl2 PE=4 SV=1
27 : B3NBV7_DROER 0.85 0.93 1 44 27 72 46 1 2 72 B3NBV7 GG14261 OS=Drosophila erecta GN=Dere\GG14261 PE=4 SV=1
28 : B4HTR0_DROSE 0.83 0.93 1 44 27 72 46 1 2 72 B4HTR0 GM14054 OS=Drosophila sechellia GN=Dsec\GM14054 PE=4 SV=1
29 : B4PGP8_DROYA 0.83 0.93 1 44 27 72 46 1 2 72 B4PGP8 GE20688 OS=Drosophila yakuba GN=Dyak\GE20688 PE=4 SV=1
30 : G2J643_DROME 0.83 0.93 1 44 37 82 46 1 2 82 G2J643 FI15202p1 (Fragment) OS=Drosophila melanogaster GN=dro6-RA PE=2 SV=1
31 : Q2UY30_DROME 0.83 0.93 1 44 27 72 46 1 2 72 Q2UY30 Dro6 protein OS=Drosophila melanogaster GN=Drsl6 PE=4 SV=1
32 : Q2UY76_DROSI 0.83 0.93 1 44 27 72 46 1 2 72 Q2UY76 Dro6 protein OS=Drosophila simulans GN=dro6 PE=4 SV=1
33 : Q2UYT2_DROSI 0.83 0.93 1 44 27 72 46 1 2 72 Q2UYT2 Dro6 protein OS=Drosophila simulans GN=dro6 PE=4 SV=1
34 : Q9VZQ4_DROME 0.83 0.93 1 44 27 72 46 1 2 72 Q9VZQ4 Dro6 protein OS=Drosophila melanogaster GN=Drsl6 PE=4 SV=1
35 : B4PGN7_DROYA 0.80 0.91 1 44 27 70 44 0 0 70 B4PGN7 GE21352 OS=Drosophila yakuba GN=Dyak\GE21352 PE=4 SV=1
36 : Q2UY63_DROSI 0.80 0.91 1 44 27 72 46 1 2 72 Q2UY63 Dro6 protein OS=Drosophila simulans GN=dro6 PE=4 SV=1
37 : B3NBU5_DROER 0.77 0.89 1 44 27 70 44 0 0 70 B3NBU5 GG15126 OS=Drosophila erecta GN=Dere\GG15126 PE=4 SV=1
38 : B4HTQ9_DROSE 0.75 0.89 1 44 26 69 44 0 0 69 B4HTQ9 GM14055 OS=Drosophila sechellia GN=Dsec\GM14055 PE=4 SV=1
39 : B4QPI1_DROSI 0.75 0.89 1 44 26 69 44 0 0 69 B4QPI1 Drosomycin-1 OS=Drosophila simulans GN=dro1 PE=4 SV=1
40 : Q2UY02_DROSI 0.75 0.86 1 44 27 70 44 0 0 70 Q2UY02 Dro1 protein OS=Drosophila simulans GN=dro1 PE=4 SV=1
41 : Q2UY31_DROME 0.75 0.89 1 44 27 70 44 0 0 70 Q2UY31 Dro1 protein OS=Drosophila melanogaster GN=Drsl1 PE=4 SV=1
42 : Q2UYT3_DROSI 0.75 0.89 1 44 27 70 44 0 0 70 Q2UYT3 Dro1 protein OS=Drosophila simulans GN=dro1 PE=4 SV=1
43 : B7FNM4_DROME 0.73 0.82 1 44 33 76 44 0 0 76 B7FNM4 IP20720p (Fragment) OS=Drosophila melanogaster GN=dro4-RA PE=2 SV=1
44 : Q2UYJ8_DROME 0.73 0.86 1 44 26 69 44 0 0 69 Q2UYJ8 Dro1 protein OS=Drosophila melanogaster GN=Drsl1 PE=4 SV=1
45 : Q2UYS7_DROSI 0.73 0.82 1 44 28 71 44 0 0 71 Q2UYS7 Dro4 protein OS=Drosophila simulans GN=dro4 PE=4 SV=1
46 : Q2UYU3_DROSI 0.73 0.82 1 44 28 71 44 0 0 71 Q2UYU3 Dro4 protein OS=Drosophila simulans GN=dro4 PE=4 SV=1
47 : Q86GH7_DROME 0.73 0.86 1 44 1 44 44 0 0 44 Q86GH7 Drosomycin-like C (Fragment) OS=Drosophila melanogaster GN=Drsl1 PE=2 SV=1
48 : Q8IRD6_DROME 0.73 0.82 1 44 28 71 44 0 0 71 Q8IRD6 Dro4 protein OS=Drosophila melanogaster GN=Drsl4 PE=4 SV=1
49 : Q9VZQ5_DROME 0.73 0.86 1 44 26 69 44 0 0 69 Q9VZQ5 Dro1 protein OS=Drosophila melanogaster GN=Drsl1 PE=4 SV=2
50 : B3NBV6_DROER 0.70 0.86 1 44 26 69 44 0 0 69 B3NBV6 GG14262 OS=Drosophila erecta GN=Dere\GG14262 PE=4 SV=1
51 : B4PGN8_DROYA 0.70 0.82 1 44 28 71 44 0 0 71 B4PGN8 GE21353 OS=Drosophila yakuba GN=Dyak\GE21353 PE=4 SV=1
52 : Q2UY39_DROSI 0.70 0.82 1 44 28 71 44 0 0 71 Q2UY39 Dro4 protein OS=Drosophila simulans GN=dro4 PE=4 SV=1
53 : Q2UYA3_DROME 0.70 0.84 1 44 26 69 44 0 0 69 Q2UYA3 Dro1 protein OS=Drosophila melanogaster GN=Drsl1 PE=4 SV=1
54 : Q2UYL9_DROME 0.70 0.84 1 44 26 69 44 0 0 69 Q2UYL9 Dro1 protein OS=Drosophila melanogaster GN=Drsl1 PE=4 SV=1
55 : Q95NH5_9MUSC 0.70 0.77 1 44 28 71 44 0 0 71 Q95NH5 Drosomycin-like A (Precursor) OS=Drosophila triauraria GN=Drsl-B PE=4 SV=1
56 : B3NBU6_DROER 0.68 0.80 1 44 28 71 44 0 0 71 B3NBU6 GG15127 OS=Drosophila erecta GN=Dere\GG15127 PE=4 SV=1
57 : B3NBU7_DROER 0.68 0.80 1 44 28 71 44 0 0 71 B3NBU7 GG15128 OS=Drosophila erecta GN=Dere\GG15128 PE=4 SV=1
58 : Q2UYI2_DROME 0.68 0.77 1 44 28 71 44 0 0 71 Q2UYI2 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
59 : B0LUZ1_DROME 0.66 0.77 1 44 28 71 44 0 0 71 B0LUZ1 Drosomycin 3 OS=Drosophila melanogaster PE=4 SV=1
60 : B3DNG9_DROME 0.66 0.77 1 44 40 83 44 0 0 83 B3DNG9 IP21094p (Fragment) OS=Drosophila melanogaster GN=CG32283-RA PE=2 SV=1
61 : B4PGP7_DROYA 0.66 0.89 1 44 26 69 44 0 0 69 B4PGP7 GE20689 OS=Drosophila yakuba GN=Dyak\GE20689 PE=4 SV=1
62 : Q2UY34_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q2UY34 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
63 : Q2UY86_DROSI 0.66 0.77 1 44 28 71 44 0 0 71 Q2UY86 Dro3 protein OS=Drosophila simulans GN=dro3 PE=4 SV=1
64 : Q2UYC0_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYC0 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
65 : Q2UYD4_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYD4 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
66 : Q2UYI9_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYI9 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
67 : Q2UYM9_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYM9 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
68 : Q2UYQ9_DROSI 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYQ9 Dro3 protein OS=Drosophila simulans GN=dro3 PE=4 SV=1
69 : Q2UYT7_DROSI 0.66 0.77 1 44 28 71 44 0 0 71 Q2UYT7 Dro3 protein OS=Drosophila simulans GN=dro3 PE=4 SV=1
70 : Q8IRD7_DROME 0.66 0.77 1 44 28 71 44 0 0 71 Q8IRD7 Drosomycin-like 3 OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
71 : Q2UY99_DROSI 0.64 0.77 1 44 28 71 44 0 0 71 Q2UY99 Dro3 protein OS=Drosophila simulans GN=dro3 PE=4 SV=1
72 : Q2UYH5_DROME 0.64 0.75 1 44 28 71 44 0 0 71 Q2UYH5 Dro3 protein OS=Drosophila melanogaster GN=Drsl3 PE=4 SV=1
73 : B4HTQ0_DROSE 0.61 0.75 1 44 28 71 44 0 0 71 B4HTQ0 GM14561 OS=Drosophila sechellia GN=Dsec\GM14561 PE=4 SV=1
74 : I6MRK7_CAERE 0.52 0.68 4 42 26 63 40 2 3 64 I6MRK7 Mycin-5 (Precursor) OS=Caenorhabditis remanei PE=4 SV=2
75 : E3NBU2_CAERE 0.49 0.60 1 42 21 61 43 2 3 62 E3NBU2 Putative uncharacterized protein OS=Caenorhabditis remanei GN=CRE_14279 PE=4 SV=1
76 : I6MRL0_CAERE 0.49 0.60 1 42 22 62 43 2 3 63 I6MRL0 Mycin-9 (Precursor) OS=Caenorhabditis remanei PE=4 SV=2
77 : I6MRL2_CAERE 0.49 0.65 1 42 21 61 43 2 3 62 I6MRL2 Mycin-13 (Precursor) OS=Caenorhabditis remanei PE=4 SV=2
78 : E3NBT8_CAERE 0.47 0.58 1 42 21 61 43 2 3 62 E3NBT8 Putative uncharacterized protein OS=Caenorhabditis remanei GN=CRE_14278 PE=4 SV=1
79 : I6MRK9_CAERE 0.47 0.65 1 42 13 53 43 2 3 54 I6MRK9 Mycin-7 (Precursor) OS=Caenorhabditis remanei PE=2 SV=1
80 : I6MRL1_CAERE 0.47 0.58 1 42 21 61 43 2 3 62 I6MRL1 Mycin-11 (Precursor) OS=Caenorhabditis remanei PE=4 SV=2
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 106 80 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
2 2 A a E -A 41 0A 31 80 22 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A L E -A 40 0A 68 80 21 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLPLPPLPLLLPLLLLQLLLLLLLLLLLLL
4 4 A S - 0 0 19 81 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
5 5 A G S S+ 0 0 75 81 3 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
6 6 A R S S+ 0 0 213 81 69 RRRRRRRRRRRRRRRRRRRRRKKKKKRRRRRRRRKRKRRRRRRRRRRRRNTRRRTSTTTTKTTTTTTTTT
7 7 A Y + 0 0 34 81 4 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYFYFFYFYYFFYYFFFFFFFFFFFFFFFF
8 8 A K + 0 0 192 81 71 KKKKKKKKGKGGGGGGGGGGGKKKKKRRRRRRRRKRKRRRRRSRSSRSRRSSRRKSSGGGRGGGGGGGGG
9 9 A G S S- 0 0 45 81 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
10 10 A P - 0 0 92 81 24 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSSSSSPSPPSPSSPPSSPPPPPPSPPPPPPPPP
11 11 A b + 0 0 0 81 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
12 12 A A >> - 0 0 18 74 98 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAAAAAAAWAWWAWAAWWAAWWWWWWYWWWWWWWWW
13 13 A V T 34 S+ 0 0 122 74 55 VVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVVVVVVVVVVAVAAVAVVAAVVAAAAAAVAAAAAASAA
14 14 A W T 34 S+ 0 0 184 81 6 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
15 15 A D T <> S+ 0 0 29 81 67 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDNHHHHHDHDDHDHHDDHHSSDSSSHSSSSSSSSS
16 16 A N H X S+ 0 0 54 81 70 NNNNNNNNNHNNNNNNNNNNNNNNNNNNNNNNNNNNHRRRRRGRGGRGRRGGRRGGGGGGKGGGGGGGGG
17 17 A E H > S+ 0 0 90 81 48 EEEEEEEDEEEEEEEEEEDDDEEEEEEEEEEEEELEKKKKKKEKEEKEKKEEKKEEEEEEKEEEEEEEEE
18 18 A T H > S+ 0 0 55 81 75 TTTTTTTTTTTTTTTTTTTTTMMMMMTTTTTTTTMTMKKKKKQKQQKQKKQQKKKQQKKKKKKKKKKKKK
19 19 A c H X>S+ 0 0 0 81 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
20 20 A R H X5S+ 0 0 134 81 45 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRVRRVRVRRRVVRRRRRRRRRRRRRRRR
21 21 A R H X5S+ 0 0 166 81 57 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRDDDDDRDRRDRDDRRDDRRRRRRERRRRRRRRR
22 22 A V H X5S+ 0 0 34 81 31 VVVVVVVVVVVVVVVVVVVVVIIIIIVVVVVVVVIVIIIIIILILLILIILLIILLLLLLILLLLLLLLL
23 23 A d H X>S+ 0 0 0 81 6 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCFFCCCCCCCCCCCCCCCC
24 24 A K H < - 0 0 22 81 4 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSRSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSSSSSS
35 35 A P T 3 S+ 0 0 126 81 74 PPPPPPPPPPPPPPPPPPPPPPPPPPAASAAAAAPAAPPPPPAPAAPAPPAAPPGAAGGGPGGGGGGGGG
36 36 A S T 3 S- 0 0 88 81 59 SSSSSSSSSSSSSSSSSSSSSSSSSSSRRRRRRRSRSSSSSSSSSSSSSSSSSSGGSGGASGGGGGGGGA
37 37 A L S < S+ 0 0 85 81 42 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLSLLMMMLMMMMMMMMM
38 38 A K - 0 0 100 81 41 KKKKKKKKKKKKKKKKKKKKKKKKKKKQQQQQQQKQKKKKKKKKKKKKKKKKKKKQKKKKKKKKKKKKKK
39 39 A c E - B 0 33A 4 77 0 CCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
40 40 A W E -AB 3 32A 100 77 0 WWWWWWWWWWWW WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW
41 41 A d E -AB 2 31A 0 77 0 CCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
42 42 A E E S+ B 0 30A 74 77 9 EEEEEEEEEEEE EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
43 43 A G 0 0 48 70 23 GGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGVGGGGGQGQQGQGGNQGGGGQGGGGGGGGGGGGG
44 44 A a 0 0 100 70 0 CCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
## ALIGNMENTS 71 - 80
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A D 0 0 106 80 0 DDD DDDDDD
2 2 A a E -A 41 0A 31 80 22 CCC VVVVVV
3 3 A L E -A 40 0A 68 80 21 LLL MMMMMM
4 4 A S - 0 0 19 81 0 SSSSSSSSSS
5 5 A G S S+ 0 0 75 81 3 GGGGGGGGGG
6 6 A R S S+ 0 0 213 81 69 TTTHNNNSKN
7 7 A Y + 0 0 34 81 4 FFFYFFFFFF
8 8 A K + 0 0 192 81 71 GGGKKKKKKK
9 9 A G S S- 0 0 45 81 0 GGGGGGGGGG
10 10 A P - 0 0 92 81 24 APPPPPPPPP
11 11 A b + 0 0 0 81 0 CCCCCCCCCC
12 12 A A >> - 0 0 18 74 98 WWW.......
13 13 A V T 34 S+ 0 0 122 74 55 AAA.......
14 14 A W T 34 S+ 0 0 184 81 6 WWWYYYWYYY
15 15 A D T <> S+ 0 0 29 81 67 SSSHSSSSSS
16 16 A N H X S+ 0 0 54 81 70 GGGDDDDDDD
17 17 A E H > S+ 0 0 90 81 48 EEEESSNSSS
18 18 A T H > S+ 0 0 55 81 75 KKKNNNNNNN
19 19 A c H X>S+ 0 0 0 81 0 CCCCCCCCCC
20 20 A R H X5S+ 0 0 134 81 45 RRRNAANANA
21 21 A R H X5S+ 0 0 166 81 57 RRRGGGGGGG
22 22 A V H X5S+ 0 0 34 81 31 LLLVVVVVVV
23 23 A d H X>S+ 0 0 0 81 6 CCCCCCCCCC
24 24 A K H < - 0 0 22 81 4 SSSSSSSSSS
35 35 A P T 3 S+ 0 0 126 81 74 GGGRFFRYHF
36 36 A S T 3 S- 0 0 88 81 59 GGGWWWWWWW
37 37 A L S < S+ 0 0 85 81 42 MMMGSSGSSS
38 38 A K - 0 0 100 81 41 KKKggggggg
39 39 A c E - B 0 33A 4 77 0 CCCccccccc
40 40 A W E -AB 3 32A 100 77 0 WWRWWWWWWW
41 41 A d E -AB 2 31A 0 77 0 CCCCCCCCCC
42 42 A E E S+ B 0 30A 74 77 9 EEEDDDDDDD
43 43 A G 0 0 48 70 23 GGV
44 44 A a 0 0 100 70 0 CCC
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 80 0 0 0.000 0 1.00
2 2 A 8 0 0 0 0 0 0 0 0 0 0 0 93 0 0 0 0 0 0 0 80 0 0 0.266 8 0.78
3 3 A 0 85 0 8 0 0 0 0 0 6 0 0 0 0 0 0 1 0 0 0 80 0 0 0.560 18 0.79
4 4 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 81 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 1 0 0 0 0 0 81 0 0 0.067 2 0.97
6 6 A 0 0 0 0 0 0 0 0 0 0 2 22 0 1 57 11 0 0 6 0 81 0 0 1.217 40 0.31
7 7 A 0 0 0 0 38 0 62 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0.665 22 0.96
8 8 A 0 0 0 0 0 0 0 33 0 0 10 0 0 0 26 31 0 0 0 0 81 0 0 1.308 43 0.28
9 9 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 1 84 15 0 0 0 0 0 0 0 0 0 81 0 0 0.484 16 0.75
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 81 7 0 0.000 0 1.00
12 12 A 0 0 0 0 0 32 1 0 65 1 0 0 0 0 0 0 0 0 0 0 74 0 0 0.762 25 0.02
13 13 A 66 0 1 0 0 0 0 0 31 0 1 0 0 0 0 0 0 0 0 0 74 0 0 0.753 25 0.44
14 14 A 0 0 0 0 0 93 7 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0.264 8 0.93
15 15 A 0 0 0 0 0 0 0 0 0 0 28 0 0 16 0 0 0 1 1 53 81 0 0 1.096 36 0.32
16 16 A 0 0 0 0 0 0 0 30 0 0 0 0 0 2 14 1 0 0 44 9 81 0 0 1.349 45 0.29
17 17 A 0 1 0 0 0 0 0 0 0 0 6 0 0 0 0 16 0 70 1 5 81 0 0 0.970 32 0.52
18 18 A 0 0 0 9 0 0 0 0 0 0 0 38 0 0 0 35 10 0 9 0 81 0 0 1.387 46 0.25
19 19 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 81 0 0 0.000 0 1.00
20 20 A 6 0 0 0 0 0 0 0 5 0 0 0 0 0 85 0 0 0 4 0 81 0 0 0.579 19 0.55
21 21 A 0 0 0 0 0 0 0 9 0 0 0 0 0 0 77 0 0 1 0 14 81 0 0 0.742 24 0.42
22 22 A 47 30 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 1.056 35 0.69
23 23 A 0 0 0 0 2 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 81 0 0 0.116 3 0.94
24 24 A 0 0 21 0 0 0 0 0 0 0 0 1 0 1 23 40 14 0 0 0 81 0 0 1.414 47 0.25
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 77 0 9 81 0 0 0.699 23 0.60
26 26 A 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 99 0 0 81 0 0 0.067 2 0.99
27 27 A 0 0 0 0 0 0 0 99 0 0 0 0 0 0 1 0 0 0 0 0 81 0 0 0.067 2 0.97
28 28 A 0 0 0 0 0 0 7 1 0 0 0 0 0 28 63 0 0 0 0 0 81 0 0 0.896 29 0.41
29 29 A 30 0 9 0 0 0 0 11 0 0 27 15 0 0 0 9 0 0 0 0 81 0 9 1.665 55 0.15
30 30 A 0 0 0 0 0 0 0 2 1 0 94 0 0 0 0 0 0 0 0 2 81 0 0 0.297 9 0.86
31 31 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 81 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 81 0 0 0.000 0 1.00
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 81 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 98 1 0 0 1 0 0 0 0 0 81 0 0 0.133 4 0.95
35 35 A 0 0 0 0 4 0 1 20 21 49 1 0 0 1 2 0 0 0 0 0 81 0 0 1.373 45 0.26
36 36 A 0 0 0 0 0 9 0 19 2 0 60 0 0 0 10 0 0 0 0 0 81 0 0 1.148 38 0.40
37 37 A 0 72 0 19 0 0 0 2 0 0 7 0 0 0 0 0 0 0 0 0 81 0 0 0.836 27 0.57
38 38 A 0 0 0 0 0 0 0 9 0 0 0 0 0 0 0 80 11 0 0 0 81 0 7 0.632 21 0.59
39 39 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
40 40 A 0 0 0 0 0 99 0 0 0 0 0 0 0 0 1 0 0 0 0 0 77 0 0 0.069 2 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 77 0 0 0.000 0 1.00
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 91 0 9 77 0 0 0.305 10 0.90
43 43 A 3 0 0 0 0 0 0 87 0 0 0 0 0 0 0 0 9 0 1 0 70 0 0 0.493 16 0.76
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
27 30 56 2 gRVs
28 30 56 2 gRVs
29 30 56 2 gRVs
30 30 66 2 gRVs
31 30 56 2 gRVs
32 30 56 2 gRVs
33 30 56 2 gRVs
34 30 56 2 gRVs
36 30 56 2 gRVs
74 34 59 1 gAc
75 37 57 1 gAc
76 37 58 1 gAc
77 37 57 1 gAc
78 37 57 1 gAc
79 37 49 1 gAc
80 37 57 1 gAc
//