Complet list of 1mb6 hssp file
Complete list of 1mb6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1MB6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER TOXIN 02-AUG-02 1MB6
COMPND MOL_ID: 1; MOLECULE: HUWENTOXIN-IV; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ORNITHOCTONUS HUWENA; ORGANISM_COMMON:
AUTHOR K.PENG,Q.SHU,S.P.LIANG
DBREF 1MB6 A 1 35 UNP P83303 TXH4_ORNHU 1 35
SEQLENGTH 35
NCHAIN 1 chain(s) in 1MB6 data set
NALIGN 17
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : TXH4_HAPSC 1MB6 1.00 1.00 1 35 53 87 35 0 0 89 P83303 Mu-theraphotoxin-Hh2a OS=Haplopelma schmidti PE=1 SV=2
2 : H4A01_HAPHA 1RYG 0.80 0.91 1 35 50 84 35 0 0 86 D2Y232 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
3 : H4A02_HAPHA 0.80 0.91 1 35 50 84 35 0 0 86 D2Y233 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
4 : H4A03_HAPHA 0.80 0.91 1 35 50 84 35 0 0 86 D2Y2D7 Mu-theraphotoxin-Hhn1b OS=Haplopelma hainanum PE=1 SV=1
5 : H4B01_HAPHA 0.77 0.91 1 35 50 84 35 0 0 86 D2Y234 Hainantoxin-IV-2 OS=Haplopelma hainanum PE=2 SV=1
6 : H4C01_HAPHA 0.77 0.91 1 35 50 84 35 0 0 86 D2Y235 Hainantoxin-IV-3 OS=Haplopelma hainanum PE=2 SV=1
7 : TXHA5_HAPHA 0.77 0.91 1 35 1 35 35 0 0 35 P60975 Mu-theraphotoxin-Hhn1a OS=Haplopelma hainanum PE=1 SV=1
8 : HTX1_HAPLI 0.69 0.81 2 33 2 33 32 0 0 35 B3EWN2 Beta-theraphotoxin-Hl1a OS=Haplopelma lividum PE=1 SV=1
9 : TX3_PARSR 0.63 0.83 1 35 1 34 35 1 1 34 P84510 Beta-theraphotoxin-Ps1a OS=Paraphysa scrofa PE=1 SV=1
10 : TX2_CERMR 0.55 0.73 1 33 1 31 33 1 2 33 P84508 Beta-theraphotoxin-Cm1b OS=Ceratogyrus marshalli PE=1 SV=1
11 : TX1_CERMR 0.51 0.74 1 35 1 33 35 1 2 33 P84507 Beta-theraphotoxin-Cm1a OS=Ceratogyrus marshalli PE=1 SV=1
12 : HTX2_HAPLI 0.47 0.74 2 35 2 33 34 1 2 33 B3EWN3 Beta/kappa-theraphotoxin-Hl2a OS=Haplopelma lividum PE=1 SV=1
13 : TX1_THEBL 0.47 0.79 2 35 3 34 34 1 2 35 P83745 Kappa-theraphotoxin-Tb1a OS=Theraphosa blondi PE=1 SV=1
14 : M5AWT6_GRARO 0.46 0.71 1 35 47 79 35 1 2 81 M5AWT6 GTx1-12 OS=Grammostola rosea PE=3 SV=1
15 : M5AYC3_GRARO 0.46 0.74 1 35 47 79 35 1 2 81 M5AYC3 GTx1-11 OS=Grammostola rosea PE=3 SV=1
16 : PTX1_PTEMU 0.46 0.69 1 35 2 34 35 1 2 34 B3EWN0 Beta-theraphotoxin-Pm1a OS=Pterinochilus murinus PE=1 SV=1
17 : VSTX3_GRARO 0.46 0.71 1 35 1 33 35 1 2 34 P0C2P5 Kappa-theraphotoxin-Gr4a OS=Grammostola rosea PE=1 SV=1
## ALIGNMENTS 1 - 17
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A E 0 0 215 15 25 EEEEEEE DDD DDDD
2 2 A a - 0 0 45 18 0 CCCCCCCCCCCCCCCCC
3 3 A L B -a 16 0A 42 18 18 LLLLLLLLLLLKLLLLL
4 4 A E > - 0 0 119 18 14 EGGGGGGGGGGGGGGGG
5 5 A I T 3 S+ 0 0 69 18 44 IFFFFFFFFWWLMWWMW
6 6 A F T 3 S+ 0 0 138 18 83 FGGGGGGGLFFFFFFFF
7 7 A K < - 0 0 92 18 52 KKKKKKKEWKKVEKKSK
8 8 A A B +B 30 0B 77 18 57 AGGGGGGKKSSTSGGSG
9 9 A b - 0 0 15 18 0 CCCCCCCCCCCCCCCCC
10 10 A N - 0 0 99 18 45 NNNNNNNNNDDTDDDDD
11 11 A P S S+ 0 0 81 18 0 PPPPPPPPPPPPPPPPP
12 12 A S S S+ 0 0 110 18 67 SSSSSSSSSKKGNDDDD
13 13 A N S S- 0 0 114 18 18 NNNNNSNNNNNKNNNNN
14 14 A D + 0 0 94 18 0 DDDDDDDDDDDDDDDDD
15 15 A Q + 0 0 100 18 53 QQQQQQQKKKKEKKKKK
16 16 A c B -a 3 0A 10 18 0 CCCCCCCCCCCCCCCCC
17 17 A a > - 0 0 20 18 0 CCCCCCCCCCCCCCCCC
18 18 A K T > 5S+ 0 0 178 11 52 KKKKKKKK.....EE..
19 19 A S T 3 5S+ 0 0 120 12 56 SSSSSSSSR....NG..
20 20 A S T 3 5S- 0 0 71 18 87 SSSSSSASPKKPPYYEE
21 21 A K T < 5 + 0 0 145 18 50 KNNNNNNSNNNNNKKGG
22 22 A L E < -C 33 0B 14 18 94 LLLLLLLLLYYHRCCRY
23 23 A V E -C 32 0B 61 17 76 VVVVVVVVVTTVEN.KK
24 24 A b E -C 31 0B 22 16 0 CCCCCCCCCCCCC..CC
25 25 A S E >> -C 30 0B 33 17 40 SSSSSSSSSSSSN.NNN
26 26 A R T 45S+ 0 0 186 18 21 RRRRRRRQRRRSRRRRR
27 27 A K T 45S+ 0 0 179 18 25 KKKKKKKKKRRKKRRKR
28 28 A T T 45S- 0 0 20 18 59 THHHHHHHDDDHHDDDD
29 29 A R T <5S+ 0 0 180 18 29 RRRRRRRKKRRKKKKKK
30 30 A W E