Complet list of 1m7l hssp file
Complete list of 1m7l.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1M7L
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER SUGAR BINDING PROTEIN 22-JUL-02 1M7L
COMPND MOL_ID: 1; MOLECULE: PULMONARY SURFACTANT-ASSOCIATED PROTEIN D; CHAIN:
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR H.KOVACS,S.I.O'DONOGHUE,H.-J.HOPPE,D.COMFORT,K.B.M.REID, I.D.CAMPBELL,
DBREF 1M7L A 1 38 UNP P35247 SFTPD_HUMAN 220 257
DBREF 1M7L B 41 78 UNP P35247 SFTPD_HUMAN 220 257
DBREF 1M7L C 81 118 UNP P35247 SFTPD_HUMAN 220 257
SEQLENGTH 40
NCHAIN 3 chain(s) in 1M7L data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : G3R0R1_GORGO 1.00 1.00 1 38 220 257 38 0 0 375 G3R0R1 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101142316 PE=4 SV=1
2 : SFTPD_HUMAN 1.00 1.00 1 38 220 257 38 0 0 375 P35247 Pulmonary surfactant-associated protein D OS=Homo sapiens GN=SFTPD PE=1 SV=3
3 : G1RIC2_NOMLE 0.97 0.97 1 38 220 257 38 0 0 375 G1RIC2 Uncharacterized protein OS=Nomascus leucogenys GN=SFTPD PE=4 SV=1
4 : G7N227_MACMU 0.97 0.97 1 38 220 257 38 0 0 375 G7N227 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_19692 PE=4 SV=1
5 : G7PEY0_MACFA 0.97 0.97 1 38 220 257 38 0 0 375 G7PEY0 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_18022 PE=4 SV=1
6 : H2NAF9_PONAB 0.97 0.97 1 38 220 257 38 0 0 375 H2NAF9 Uncharacterized protein OS=Pongo abelii GN=SFTPD PE=4 SV=1
7 : SFTPD_MACMU 0.97 0.97 1 38 220 257 38 0 0 375 Q1PBC5 Pulmonary surfactant-associated protein D OS=Macaca mulatta GN=SFTPD PE=2 SV=1
8 : G3SPS7_LOXAF 0.87 0.97 1 38 220 257 38 0 0 375 G3SPS7 Uncharacterized protein OS=Loxodonta africana GN=SFTPD PE=4 SV=1
9 : G1Q5Q5_MYOLU 0.84 0.95 1 38 220 257 38 0 0 376 G1Q5Q5 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
10 : H9KWY4_CALJA 0.84 0.95 1 38 230 267 38 0 0 380 H9KWY4 Uncharacterized protein OS=Callithrix jacchus GN=LOC100894367 PE=4 SV=1
11 : D2HJF9_AILME 0.82 0.92 1 38 220 257 38 0 0 375 D2HJF9 Uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=LOC100482361 PE=4 SV=1
12 : F7DJE3_HORSE 0.82 0.92 1 38 220 257 38 0 0 375 F7DJE3 Uncharacterized protein OS=Equus caballus GN=SFTPD PE=4 SV=1
13 : H0WYK2_OTOGA 0.82 0.97 1 38 220 257 38 0 0 375 H0WYK2 Uncharacterized protein (Fragment) OS=Otolemur garnettii GN=SFTPD PE=4 SV=1
14 : L8YEV6_TUPCH 0.82 0.92 1 38 64 101 38 0 0 219 L8YEV6 Pulmonary surfactant-associated protein D OS=Tupaia chinensis GN=TREES_T100002136 PE=4 SV=1
15 : M3XBR0_FELCA 0.82 0.97 1 38 220 257 38 0 0 375 M3XBR0 Uncharacterized protein OS=Felis catus GN=SFTPD PE=4 SV=1
16 : SFTPD_PIG 0.82 0.97 1 38 220 257 38 0 0 378 Q9N1X4 Pulmonary surfactant-associated protein D OS=Sus scrofa GN=SFTPD PE=1 SV=1
17 : F6QP69_CALJA 0.81 0.86 4 39 70 105 36 0 0 204 F6QP69 Uncharacterized protein (Fragment) OS=Callithrix jacchus PE=4 SV=1
18 : L7N1D0_MYOLU 0.79 0.92 1 38 222 259 38 0 0 378 L7N1D0 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
19 : S7N2F6_MYOBR 0.79 0.92 1 38 77 114 38 0 0 233 S7N2F6 Pulmonary surfactant-associated protein D OS=Myotis brandtii GN=D623_10018183 PE=4 SV=1
20 : S7PRP4_MYOBR 0.77 0.91 4 38 171 205 35 0 0 324 S7PRP4 Pulmonary surfactant-associated protein D OS=Myotis brandtii GN=D623_10018175 PE=4 SV=1
21 : G1PZF8_MYOLU 0.76 0.89 1 38 220 257 38 0 0 376 G1PZF8 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
22 : L5LZ77_MYODS 0.76 0.97 1 38 222 259 38 0 0 378 L5LZ77 Pulmonary surfactant-associated protein D OS=Myotis davidii GN=MDA_GLEAN10000352 PE=4 SV=1
23 : S7PK09_MYOBR 0.76 0.92 1 38 108 145 38 0 0 264 S7PK09 Pulmonary surfactant-associated protein D OS=Myotis brandtii GN=D623_10018177 PE=4 SV=1
24 : K9IX25_DESRO 0.75 0.98 1 40 119 158 40 0 0 274 K9IX25 Putative pulmonary surfactant-associated protein d-like isoform 2 OS=Desmodus rotundus PE=2 SV=1
25 : E2QWR0_CANFA 0.74 0.95 1 38 220 257 38 0 0 375 E2QWR0 Uncharacterized protein OS=Canis familiaris GN=SFTPD PE=4 SV=1
26 : G9KNG5_MUSPF 0.74 0.95 1 38 70 107 38 0 0 224 G9KNG5 Surfactant protein D (Fragment) OS=Mustela putorius furo PE=2 SV=1
27 : H0VA63_CAVPO 0.74 0.92 1 38 220 257 38 0 0 375 H0VA63 Uncharacterized protein OS=Cavia porcellus GN=SFTPD PE=4 SV=1
28 : M3XWV7_MUSPF 0.74 0.95 1 38 220 257 38 0 0 375 M3XWV7 Uncharacterized protein OS=Mustela putorius furo GN=SFTPD PE=4 SV=1
29 : S9YAV2_9CETA 0.74 0.87 1 38 64 101 38 0 0 219 S9YAV2 Pulmonary surfactant-associated protein D-like isoform 1 OS=Camelus ferus GN=CB1_000463017 PE=4 SV=1
30 : L9KFH1_TUPCH 0.73 0.86 2 38 47 83 37 0 0 201 L9KFH1 Pulmonary surfactant-associated protein D OS=Tupaia chinensis GN=TREES_T100001845 PE=4 SV=1
31 : G1Q512_MYOLU 0.71 0.97 4 38 227 261 35 0 0 380 G1Q512 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
32 : G5C4H5_HETGA 0.71 0.89 1 38 220 257 38 0 0 375 G5C4H5 Pulmonary surfactant-associated protein D OS=Heterocephalus glaber GN=GW7_13742 PE=4 SV=1
33 : S7PRN9_MYOBR 0.70 0.95 2 38 49 85 37 0 0 204 S7PRN9 Pulmonary surfactant-associated protein D OS=Myotis brandtii GN=D623_10018169 PE=4 SV=1
34 : G1PYW5_MYOLU 0.69 0.97 4 38 224 258 35 0 0 377 G1PYW5 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
35 : G1TK26_RABIT 0.68 0.95 1 38 161 198 38 0 0 316 G1TK26 Uncharacterized protein OS=Oryctolagus cuniculus GN=SFTPD PE=4 SV=2
36 : G3HQ12_CRIGR 0.68 0.89 1 38 180 217 38 0 0 335 G3HQ12 Pulmonary surfactant-associated protein D OS=Cricetulus griseus GN=I79_012901 PE=4 SV=1
37 : L5LQQ0_MYODS 0.68 0.92 1 38 101 138 38 0 0 257 L5LQQ0 Pulmonary surfactant-associated protein D OS=Myotis davidii GN=MDA_GLEAN10000435 PE=4 SV=1
38 : Q6IRS7_RAT 0.68 0.92 1 38 219 256 38 0 0 374 Q6IRS7 Surfactant protein D OS=Rattus norvegicus GN=Sftpd PE=2 SV=1
39 : SFTPD_RAT 0.68 0.92 1 38 219 256 38 0 0 374 P35248 Pulmonary surfactant-associated protein D OS=Rattus norvegicus GN=Sftpd PE=1 SV=1
40 : G1NV76_MYOLU 0.66 0.84 1 38 224 261 38 0 0 379 G1NV76 Uncharacterized protein (Fragment) OS=Myotis lucifugus PE=4 SV=1
41 : L8HQD6_9CETA 0.66 0.84 1 38 163 200 38 0 0 318 L8HQD6 Pulmonary surfactant-associated protein D OS=Bos mutus GN=M91_17107 PE=4 SV=1
42 : SFTPD_BOVIN 0.66 0.84 1 38 214 251 38 0 0 369 P35246 Pulmonary surfactant-associated protein D OS=Bos taurus GN=SFTPD PE=1 SV=2
43 : I3N6D5_SPETR 0.63 0.87 1 38 220 257 38 0 0 375 I3N6D5 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=SFTPD PE=4 SV=1
44 : L8IIL7_9CETA 0.63 0.82 1 38 214 251 38 0 0 371 L8IIL7 Collectin-46 OS=Bos mutus GN=M91_05631 PE=4 SV=1
45 : SFTPD_MOUSE 0.63 0.89 1 38 219 256 38 0 0 374 P50404 Pulmonary surfactant-associated protein D OS=Mus musculus GN=Sftpd PE=2 SV=1
46 : W5PK07_SHEEP 0.63 0.87 1 38 214 251 38 0 0 369 W5PK07 Uncharacterized protein OS=Ovis aries GN=LOC101106651 PE=4 SV=1
47 : W5PK16_SHEEP 0.63 0.87 1 38 170 207 38 0 0 325 W5PK16 Uncharacterized protein (Fragment) OS=Ovis aries GN=LOC101106651 PE=4 SV=1
48 : CL46_BOVIN 0.61 0.84 1 38 214 251 38 0 0 371 Q8MHZ9 Collectin-46 OS=Bos taurus GN=CL46 PE=2 SV=1
49 : E1BEZ9_BOVIN 0.61 0.84 1 38 214 251 38 0 0 371 E1BEZ9 Collectin-46 OS=Bos taurus GN=CL46 PE=4 SV=2
50 : F6ZNY9_ORNAN 0.61 0.82 1 38 220 257 38 0 0 375 F6ZNY9 Uncharacterized protein OS=Ornithorhynchus anatinus GN=SFTPD PE=4 SV=1
51 : F7BZK8_MONDO 0.58 0.84 1 38 220 257 38 0 0 375 F7BZK8 Uncharacterized protein OS=Monodelphis domestica GN=LOC100016303 PE=4 SV=1
52 : W5NXU4_SHEEP 0.58 0.87 1 38 153 190 38 0 0 357 W5NXU4 Uncharacterized protein OS=Ovis aries GN=LOC101108297 PE=4 SV=1
53 : F7CIY3_MONDO 0.55 0.77 8 38 219 249 31 0 0 367 F7CIY3 Uncharacterized protein OS=Monodelphis domestica PE=4 SV=1
54 : G3VKV6_SARHA 0.55 0.84 1 38 222 259 38 0 0 377 G3VKV6 Uncharacterized protein OS=Sarcophilus harrisii GN=LOC100914525 PE=4 SV=1
55 : R9TE27_CAPHI 0.55 0.84 1 38 211 248 38 0 0 368 R9TE27 Conglutinin (Precursor) OS=Capra hircus GN=CGN PE=2 SV=1
56 : CONG_BOVIN 0.53 0.84 1 38 214 251 38 0 0 371 P23805 Conglutinin OS=Bos taurus GN=CGN1 PE=1 SV=2
57 : E7DSS8_BUBBU 0.53 0.84 1 38 4 41 38 0 0 161 E7DSS8 Conglutinin 1 (Fragment) OS=Bubalus bubalis GN=CGN1 PE=2 SV=1
58 : E7DSS9_BOSTR 0.53 0.84 1 38 4 41 38 0 0 161 E7DSS9 Conglutinin 1 (Fragment) OS=Boselaphus tragocamelus GN=CGN1 PE=2 SV=1
59 : I0CF13_SHEEP 0.53 0.84 1 38 4 41 38 0 0 161 I0CF13 Conglutinin 1 (Fragment) OS=Ovis aries GN=CGN1 PE=2 SV=1
60 : L8HNX4_9CETA 0.53 0.84 1 38 214 251 38 0 0 372 L8HNX4 Conglutinin OS=Bos mutus GN=M91_04325 PE=4 SV=1
61 : M9ZKW6_CAPHI 0.53 0.84 1 38 4 41 38 0 0 161 M9ZKW6 Conglutinin (Fragment) OS=Capra hircus GN=CGN1 PE=2 SV=1
62 : M9ZN23_ANTCE 0.53 0.84 1 38 4 41 38 0 0 161 M9ZN23 Conglutinin (Fragment) OS=Antilope cervicapra GN=CGN1 PE=2 SV=1
63 : W5PK77_SHEEP 0.53 0.84 1 38 148 185 38 0 0 305 W5PK77 Uncharacterized protein (Fragment) OS=Ovis aries PE=4 SV=1
64 : H9G9K9_ANOCA 0.50 0.80 1 40 230 269 40 0 0 385 H9G9K9 Uncharacterized protein OS=Anolis carolinensis GN=SFTPD PE=4 SV=2
65 : V8NP22_OPHHA 0.50 0.79 1 38 172 209 38 0 0 465 V8NP22 Pulmonary surfactant-associated protein D (Fragment) OS=Ophiophagus hannah GN=SFTPD PE=4 SV=1
66 : K7FYU8_PELSI 0.48 0.82 1 40 218 257 40 0 0 373 K7FYU8 Uncharacterized protein OS=Pelodiscus sinensis GN=SFTPD PE=4 SV=1
67 : W5NUD7_SHEEP 0.47 0.79 1 38 217 254 38 0 0 375 W5NUD7 Uncharacterized protein OS=Ovis aries GN=LOC101113398 PE=4 SV=1
68 : B7FEK7_BOVIN 0.45 0.76 1 38 163 200 38 0 0 321 B7FEK7 43kDa collectin OS=Bos taurus GN=CL43 PE=4 SV=1
69 : CL43_BOVIN 0.45 0.76 1 38 163 200 38 0 0 321 P42916 Collectin-43 OS=Bos taurus GN=CL43 PE=1 SV=2
70 : F1MFY6_BOVIN 0.45 0.76 1 38 163 200 38 0 0 245 F1MFY6 Collectin-43 OS=Bos taurus GN=CL43 PE=4 SV=2
71 : L8IFE3_9CETA 0.45 0.76 1 38 175 212 38 0 0 333 L8IFE3 Collectin-43 (Fragment) OS=Bos mutus GN=M91_05632 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A G > 0 0 86 65 11 GGGGGGGGGGGGGGGG GG GGGGGGGGG G GGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGSSSS
2 2 A L H >> + 0 0 148 67 29 LLLLLLLLLSLLLDLL LL LLLLLILIDI LL LAPLLLLLVLLLLLLLLL LLLLLLLLLLLLLVVVV
3 3 A P H 3> S+ 0 0 102 67 67 PPPPPPPPPPLPPPPP PP PSRPPQPQPE PA PAPPPTAASAPAAAASTA TAAAAAAAAASSSPLLL
4 4 A D H 3> S+ 0 0 110 71 28 DDDDDDDDDHDDDDDGDDDNEEDDDDDDGGDDYDDDDDDDEEDEDEEDDEEE EEEEEEEEEEEEEEEEE
5 5 A V H X< S+ 0 0 67 71 26 VVVVVVVVIVIVVIIIVIIIIIMIIIIIIIIIIIISISSIVVIVSVVVVVIV IVVVVVVVVVVVIVVVV
6 6 A A H >X S+ 0 0 63 71 67 AAAAAAAAATATATTTTAAAATATTTTTTISASSTASAATNNTNANNNNNNN NNNNNNNNNNNNNADDD
7 7 A S H 3X S+ 0 0 41 71 47 SSSSSSSAASAAASAASAAAAAAAAAAAASAAAATSAAAAAAAAAAAAATSA AAAAAAAAAALLLTTTT
8 8 A L H S+ 0 0 60 72 27 RRRRRRRRRKRRRKRRRRRRRRRRRRKRRRWKWWRKWRRRRRRRRRRKKKKREKRKKKKKKKKKKKRRRR
10 10 A Q H X S+ 0 0 120 72 19 QQQQQQQQQQQRQQQQQRRQRQQRQQQQQQQQQQQQRQQQQQQQQQQQQQQQQQQQQQQQQQQNTRQQQQ
11 11 A Q H X S+ 0 0 102 72 37 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRQWQRRRRQQRQQRRRRQRQRQQKQRRRR
12 12 A V H X S+ 0 0 15 72 20 VVVVVVVVVVVVVVVVVVVVVVLVVVVVVVLVLLVILMMVVVVVMVVVVLVVVVVVVVVVVVVVVVMMMM
13 13 A E H X S+ 0 0 117 72 64 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGGKTEGGTTTATPLTTTTTTTTTTSSTRRR
14 14 A A H X S+ 0 0 53 72 63 AAAAAAAAAAAAAAATAAAAAAAAAADATAAAAAAAAAAAIIDIATTIIATIEAIIIIIIIIIAATNNNN
15 15 A L H X S+ 0 0 17 72 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
16 16 A Q H X S+ 0 0 64 72 48 QQQQQQQQQLHQQQRQQQQQQQQQQRRRQQQRQQQKQNNQEEQDKEEEEQQEHQEDDDEDEDEEEEEEEE
17 17 A G H X S+ 0 0 20 72 37 GGVKKGKGGGGRGGGGGGGGWGGGQGGGGRGRGGGGGGGEGGGGGGGGGEEGKEGGGGGGGGGGGGRGGG
18 18 A Q H X S+ 0 0 92 72 32 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQKKQQQQQKQQQQQQHQQHHHHHHHHHQQQVEEE
19 19 A V H X S+ 0 0 12 72 27 VVVVVVVVVVVVMVVVVVVVVVLVVVLVVVVLVILLVLLVLLLLLLLLLVVLVMLLLLLLLLLLLLVVVV
20 20 A Q H X S+ 0 0 126 72 51 QQQQQQQRGQQQQQRQQGGGGRRQQQQQTQRQRRQQRQQGQQQQQQQQQKKREKRRRRRRRRRKKRQQQQ
21 21 A H H X S+ 0 0 87 72 65 HHHHHHHHRHHQNHHRHRRRHQSRNHSHYYRTRRQHRRRRRRHHRRRRRIIRNIRRRRRRRRRAAARRRR
22 22 A L H X S+ 0 0 12 72 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLLLLLLFLLFFFFFFFFFLLLLLLL
23 23 A Q H X S+ 0 0 61 72 11 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQEELQQQQEQQQQQQQQQQQQQQQQQQQQQRQQQ
24 24 A A H >X S+ 0 0 59 72 63 AAAAAAASGANDAANKAGGGRGGGNNANNAGAGGAAEAAGNNTNVNNNNATNKTNNNNNNNNNAASNNNN
25 25 A A H >X S+ 0 0 35 72 47 AAAAAAASAAAATVAAAAAAAAAAATATATASAATAAAAAAAVAAAAAAISARSAAAAAAAAASSSTIII
26 26 A F H 3X S+ 0 0 4 72 19 FFFFFFFFFFFFLFFFFFFFFFFFLFFFFFFFFFLFFFFFFFFFFFFFFVFFLFFFFFFFFFFFFFVVVV
27 27 A S H X S+ 0 0 33 72 12 YYYYYHYYYYHYYYYYYCCCYYYYYYYYYYYCYYYYYYYYYYYYYYYYYFYYQYYYYYYYYYYYYYYYYY
30 30 A K H 3< S+ 0 0 80 72 24 KKKKKKKKKKRKKKRKKKKKKKKKRRKRKKKKKKRKKKKKKKKKQKKKKKKKQQKKKKKKKKKQQKRRRR
31 31 A K T << S+ 0 0 98 72 11 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKNKNKNKKQKKKK
32 32 A V T X4 S+ 0 0 16 72 50 VVVVVVVVVVVAAAVVGVVVVVVVVVAVAAVAVVVAVAAMAAAAAAAAAVAVVAAAAAAAAAAVVVAAAA
33 33 A E T 3< S+ 0 0 38 72 74 EEEEEEEEEEEEDEEEGEEEEEEDDDEDEEEEEELAEAAEMMVVAVVVVEEVDEVVVVVVVVVAVIVVVV
34 34 A L T 3 S+ 0 0 109 72 16 LLLLLLLLLLLLLLLLALLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLLLLLLTTTLLLL
35 35 A F S < S+ 0 0 90 72 4 FFFFFFFFFFFFFFFFRFFFFFFFFFFFFFYFFYFFYFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
36 36 A P - 0 0 63 72 3 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPLPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
37 37 A N + 0 0 51 72 43 NNNNNNNNNNNNNDNNLNNNSNNDDNNNNNNNNNNDNDDHNNDDDDDDDGSDNSDDDDDDDDDGGNDDDD
38 38 A G + 0 0 74 72 1 GGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
39 39 A G 0 0 84 5 78 G R R R
40 40 A I 0 0 241 4 13 V I I
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A G > 0 0 86 65 11 S
2 2 A L H >> + 0 0 148 67 29 V
3 3 A P H 3> S+ 0 0 102 67 67 L
4 4 A D H 3> S+ 0 0 110 71 28 E
5 5 A V H X< S+ 0 0 67 71 26 V
6 6 A A H >X S+ 0 0 63 71 67 D
7 7 A S H 3X S+ 0 0 41 71 47 T
8 8 A L H S+ 0 0 60 72 27 R
10 10 A Q H X S+ 0 0 120 72 19 Q
11 11 A Q H X S+ 0 0 102 72 37 R
12 12 A V H X S+ 0 0 15 72 20 M
13 13 A E H X S+ 0 0 117 72 64 R
14 14 A A H X S+ 0 0 53 72 63 N
15 15 A L H X S+ 0 0 17 72 0 L
16 16 A Q H X S+ 0 0 64 72 48 E
17 17 A G H X S+ 0 0 20 72 37 G
18 18 A Q H X S+ 0 0 92 72 32 E
19 19 A V H X S+ 0 0 12 72 27 V
20 20 A Q H X S+ 0 0 126 72 51 Q
21 21 A H H X S+ 0 0 87 72 65 R
22 22 A L H X S+ 0 0 12 72 5 L
23 23 A Q H X S+ 0 0 61 72 11 Q
24 24 A A H >X S+ 0 0 59 72 63 N
25 25 A A H >X S+ 0 0 35 72 47 I
26 26 A F H 3X S+ 0 0 4 72 19 V
27 27 A S H X S+ 0 0 33 72 12 Y
30 30 A K H 3< S+ 0 0 80 72 24 R
31 31 A K T << S+ 0 0 98 72 11 K
32 32 A V T X4 S+ 0 0 16 72 50 A
33 33 A E T 3< S+ 0 0 38 72 74 V
34 34 A L T 3 S+ 0 0 109 72 16 L
35 35 A F S < S+ 0 0 90 72 4 F
36 36 A P - 0 0 63 72 3 P
37 37 A N + 0 0 51 72 43 D
38 38 A G + 0 0 74 72 1 G
39 39 A G 0 0 84 5 78
40 40 A I 0 0 241 4 13
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 92 0 0 8 0 0 0 0 0 0 0 0 0 65 0 0 0.271 9 0.88
2 2 A 9 79 4 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 0 3 67 0 0 0.834 27 0.70
3 3 A 0 7 0 0 0 0 0 0 28 45 9 4 0 0 1 0 3 1 0 0 67 0 0 1.496 49 0.33
4 4 A 0 0 0 0 0 0 1 4 0 0 0 0 0 1 0 0 0 39 1 52 71 0 0 1.020 34 0.72
5 5 A 54 0 39 1 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 71 0 0 0.924 30 0.73
6 6 A 0 0 1 0 0 0 0 0 32 0 6 23 0 0 0 0 0 0 32 6 71 0 0 1.450 48 0.33
7 7 A 0 4 0 0 0 0 0 0 66 0 20 10 0 0 0 0 0 0 0 0 71 0 0 0.955 31 0.53
8 8 A 3 94 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.253 8 0.96
9 9 A 0 0 0 0 0 6 0 0 0 0 0 0 0 0 64 29 0 1 0 0 72 0 0 0.866 28 0.73
10 10 A 0 0 0 0 0 0 0 0 0 0 0 1 0 0 10 0 88 0 1 0 72 0 0 0.462 15 0.81
11 11 A 0 0 0 0 0 1 0 0 0 0 0 0 0 0 25 1 72 0 0 0 72 0 0 0.700 23 0.63
12 12 A 79 8 1 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.696 23 0.79
13 13 A 0 1 0 0 0 0 0 6 1 1 3 22 0 0 6 1 0 58 0 0 72 0 0 1.307 43 0.36
14 14 A 0 0 21 0 0 0 0 0 60 0 0 8 0 0 0 0 0 1 7 3 72 0 0 1.186 39 0.37
15 15 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
16 16 A 0 1 0 0 0 0 0 0 0 0 0 0 0 3 7 3 49 26 3 8 72 0 0 1.453 48 0.51
17 17 A 1 0 0 0 0 1 0 79 0 0 0 0 0 0 6 6 1 6 0 0 72 0 0 0.845 28 0.62
18 18 A 1 0 0 0 0 0 0 0 0 0 0 0 0 14 1 4 74 6 0 0 72 0 0 0.911 30 0.67
19 19 A 56 40 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.852 28 0.73
20 20 A 0 0 0 0 0 0 0 8 0 0 0 1 0 0 26 7 56 1 0 0 72 0 0 1.189 39 0.48
21 21 A 0 0 4 0 0 0 3 0 4 0 3 1 0 28 49 0 4 0 4 0 72 0 0 1.495 49 0.35
22 22 A 0 85 0 0 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.427 14 0.94
23 23 A 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 92 6 0 0 72 0 0 0.359 11 0.88
24 24 A 1 0 0 0 0 0 0 15 31 0 3 4 0 0 1 3 0 1 39 1 72 0 0 1.586 52 0.37
25 25 A 3 0 7 0 0 0 0 0 71 0 10 8 0 0 1 0 0 0 0 0 72 0 0 1.022 34 0.52
26 26 A 8 6 0 0 86 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.496 16 0.80
27 27 A 0 17 1 0 0 0 0 0 1 0 72 8 0 0 0 0 0 0 0 0 72 0 0 0.860 28 0.47
28 28 A 0 0 1 0 0 0 0 0 0 0 0 0 0 3 8 10 78 0 0 0 72 0 0 0.788 26 0.68
29 29 A 0 0 0 0 1 0 89 0 0 0 0 0 6 3 0 0 1 0 0 0 72 0 0 0.484 16 0.87
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 78 7 0 0 0 72 0 0 0.668 22 0.75
31 31 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 1 0 6 0 72 0 0 0.287 9 0.89
32 32 A 49 0 0 1 0 0 0 1 49 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.820 27 0.49
33 33 A 31 1 1 3 0 0 0 1 7 0 0 0 0 0 0 0 0 47 0 8 72 0 0 1.387 46 0.25
34 34 A 1 93 0 0 0 0 0 0 1 0 0 4 0 0 0 0 0 0 0 0 72 0 0 0.318 10 0.84
35 35 A 0 0 0 0 94 0 4 0 0 0 0 0 0 0 1 0 0 0 0 0 72 0 0 0.246 8 0.95
36 36 A 0 1 0 0 0 0 0 0 0 99 0 0 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.96
37 37 A 0 1 0 0 0 0 0 4 0 0 4 0 0 1 0 0 0 0 50 39 72 0 0 1.097 36 0.57
38 38 A 0 0 0 0 0 0 0 99 1 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.98
39 39 A 0 0 0 0 0 0 0 40 0 0 0 0 0 0 60 0 0 0 0 0 5 0 0 0.673 22 0.22
40 40 A 25 0 75 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0.562 18 0.87
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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