Complet list of 1l3o hssp file
Complete list of 1l3o.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1L3O
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER OXYGEN STORAGE/TRANSPORT 28-FEB-02 1L3O
COMPND MOL_ID: 1; MOLECULE: CYTOCHROME C7; CHAIN: A; SYNONYM: CYTOCHROME C3,
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: DESULFUROMONAS ACETOXIDANS; ORGANISM_T
AUTHOR M.ASSFALG,I.BERTINI,P.TURANO,M.BRUSCHI,M.C.DURAND, M.T.GIUDICI-ORTICON
DBREF 1L3O A 1 68 UNP P00137 CYC3_DESAC 1 68
SEQLENGTH 68
NCHAIN 1 chain(s) in 1L3O data set
NALIGN 61
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CYC3_DESAC 1NEW 0.97 0.97 1 68 1 68 68 0 0 68 P00137 Cytochrome c3 OS=Desulfuromonas acetoxidans GN=cyd PE=1 SV=1
2 : B5EBF6_GEOBB 0.59 0.70 1 68 21 89 69 1 1 89 B5EBF6 Cytochrome c OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ppcG PE=4 SV=1
3 : E8WRV2_GEOS8 0.59 0.70 1 68 21 89 69 1 1 89 E8WRV2 Cytochrome c, class III, conserved region (Precursor) OS=Geobacter sp. (strain M18) GN=GM18_0642 PE=4 SV=1
4 : C6E5L8_GEOSM 0.58 0.71 1 68 21 89 69 1 1 89 C6E5L8 Uncharacterized protein (Precursor) OS=Geobacter sp. (strain M21) GN=GM21_3521 PE=4 SV=1
5 : A5G8Z9_GEOUR 0.53 0.67 1 68 21 89 70 3 3 89 A5G8Z9 Uncharacterized protein (Precursor) OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4124 PE=4 SV=1
6 : Q1JVW5_DESAC 0.53 0.71 1 68 21 95 75 4 7 95 Q1JVW5 Cytochrome c3 (Precursor) OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_0229 PE=4 SV=1
7 : D7AHG1_GEOSK 0.52 0.58 3 68 24 92 69 3 3 92 D7AHG1 Cytochrome c, 3 heme-binding sites OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=ppcD PE=4 SV=1
8 : Q74ED8_GEOSL3H4N 0.52 0.58 3 68 24 92 69 3 3 92 Q74ED8 Cytochrome c OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=ppcD PE=1 SV=1
9 : B9M0E4_GEODF 0.50 0.60 1 68 21 89 70 3 3 89 B9M0E4 Uncharacterized protein (Precursor) OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=Geob_0616 PE=4 SV=1
10 : A5G875_GEOUR 0.49 0.59 1 68 21 90 70 2 2 90 A5G875 Uncharacterized protein (Precursor) OS=Geobacter uraniireducens (strain Rf4) GN=Gura_3843 PE=4 SV=1
11 : B3E7F4_GEOLS 0.49 0.64 1 68 21 89 70 3 3 89 B3E7F4 Cytochrome c3 (Precursor) OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=Glov_2758 PE=4 SV=1
12 : B5EGC6_GEOBB 0.47 0.56 1 68 21 90 70 2 2 90 B5EGC6 Cytochrome c OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ppcB PE=4 SV=1
13 : B9M4R0_GEODF 0.47 0.57 1 68 21 90 70 2 2 90 B9M4R0 Uncharacterized protein (Precursor) OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=Geob_1426 PE=4 SV=1
14 : A5G8Z6_GEOUR 0.46 0.54 1 68 21 90 70 2 2 90 A5G8Z6 Uncharacterized protein (Precursor) OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4121 PE=4 SV=1
15 : B9M0E7_GEODF 0.46 0.54 1 68 21 90 70 2 2 90 B9M0E7 Uncharacterized protein (Precursor) OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=Geob_0619 PE=4 SV=1
16 : C6E9Q4_GEOSM 0.46 0.54 1 68 21 90 70 2 2 90 C6E9Q4 Uncharacterized protein (Precursor) OS=Geobacter sp. (strain M21) GN=GM21_4139 PE=4 SV=1
17 : D7AEB1_GEOSK 0.46 0.58 1 68 21 91 71 3 3 91 D7AEB1 Cytochrome c, 3 heme-binding sites OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=ppcB PE=4 SV=1
18 : H1L905_GEOME 0.46 0.59 1 68 21 90 70 2 2 90 H1L905 Putative uncharacterized protein (Precursor) OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_2502 PE=4 SV=1
19 : Q39QU5_GEOMG 0.46 0.59 1 68 21 90 70 2 2 90 Q39QU5 Cytochrome c OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ppcB PE=4 SV=1
20 : Q74G83_GEOSL3BXU 0.46 0.58 1 68 21 91 71 3 3 91 Q74G83 Cytochrome c OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=ppcB PE=1 SV=1
21 : E1PTF6_GEOSK 0.44 0.54 1 66 21 88 68 2 2 90 E1PTF6 Cytochrome c, 3 heme-binding sites OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=ppcE PE=4 SV=1
22 : E8WL09_GEOS8 0.44 0.54 1 68 21 90 70 2 2 90 E8WL09 Cytochrome c, class III, conserved region (Precursor) OS=Geobacter sp. (strain M18) GN=GM18_4510 PE=4 SV=1
23 : Q74CB4_GEOSL3H34 0.44 0.54 1 66 21 88 68 2 2 90 Q74CB4 Cytochrome c OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=ppcE PE=1 SV=1
24 : B5EGC0_GEOBB 0.43 0.49 4 68 26 94 69 3 4 94 B5EGC0 Cytochrome c OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=ppcD PE=4 SV=1
25 : C6E9P9_GEOSM 0.43 0.49 4 68 26 94 69 3 4 94 C6E9P9 Cytochrome c3 (Precursor) OS=Geobacter sp. (strain M21) GN=GM21_4134 PE=4 SV=1
26 : CYC7_GEOMG 0.43 0.54 1 68 21 90 70 2 2 90 P81894 Cytochrome c7 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2902 PE=1 SV=2
27 : H1L611_GEOME 0.43 0.54 1 68 21 90 70 2 2 90 H1L611 Cytochrome c3 (Precursor) OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_1458 PE=4 SV=1
28 : D7AFU0_GEOSK2LZZ 0.42 0.54 1 68 21 91 71 3 3 91 D7AFU0 Cytochrome c, 3 heme-binding sites OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=ppcA PE=1 SV=1
29 : E8WL03_GEOS8 0.42 0.52 2 68 24 94 71 3 4 94 E8WL03 Cytochrome c, class III, conserved region (Precursor) OS=Geobacter sp. (strain M18) GN=GM18_4504 PE=4 SV=1
30 : G5EBD6_GEOSL 0.42 0.54 1 68 21 91 71 3 3 91 G5EBD6 Cytochrome c OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=ppcA PE=4 SV=1
31 : Q8GGK7_GEOSN3SJ0 0.42 0.54 1 68 21 91 71 3 3 91 Q8GGK7 PpcA (Fragment) OS=Geobacter sulfurreducens GN=ppcA PE=1 SV=1
32 : A7HC65_ANADF 0.41 0.57 1 68 25 92 69 2 2 93 A7HC65 Cytochrome c class III OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2108 PE=4 SV=1
33 : B4UCY9_ANASK 0.41 0.58 1 68 24 94 71 3 3 95 B4UCY9 Cytochrome c3 (Precursor) OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_2159 PE=4 SV=1
34 : B8JA68_ANAD2 0.41 0.58 1 68 24 94 71 3 3 95 B8JA68 Cytochrome c3 (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_2249 PE=4 SV=1
35 : H1L3M3_GEOME 0.41 0.56 1 68 21 90 70 2 2 90 H1L3M3 Cytochrome c3 (Precursor) OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_0620 PE=4 SV=1
36 : Q2III7_ANADE 0.41 0.58 1 68 24 94 71 3 3 95 Q2III7 Cytochrome c3 (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1696 PE=4 SV=1
37 : Q39UJ9_GEOMG 0.41 0.56 1 68 21 90 70 2 2 90 Q39UJ9 Cytochrome c OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ppcE PE=4 SV=1
38 : H1L4M3_GEOME 0.40 0.53 1 68 23 92 70 2 2 92 H1L4M3 Cytochrome c3 (Precursor) OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_0927 PE=4 SV=1
39 : Q1K0W0_DESAC 0.40 0.48 1 68 22 95 75 4 8 95 Q1K0W0 Cytochrome c3 (Precursor) OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_1712 PE=4 SV=1
40 : Q39YU6_GEOMG 0.40 0.53 1 68 23 92 70 2 2 92 Q39YU6 Cytochrome c OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ppcF PE=4 SV=1
41 : A7HC66_ANADF 0.39 0.57 1 68 23 91 70 3 3 92 A7HC66 Cytochrome c, class III OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2109 PE=4 SV=1
42 : Q1K1X6_DESAC 0.39 0.54 2 68 52 121 71 4 5 121 Q1K1X6 Uncharacterized protein (Precursor) OS=Desulfuromonas acetoxidans DSM 684 GN=Dace_2758 PE=4 SV=1
43 : B3EAB2_GEOLS 0.38 0.51 1 68 26 98 73 2 5 98 B3EAB2 Cytochrome c3 (Precursor) OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=Glov_0209 PE=4 SV=1
44 : B4UBF4_ANASK 0.38 0.55 1 66 50 118 71 6 7 338 B4UBF4 Uncharacterized protein (Precursor) OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_1988 PE=4 SV=1
45 : B8J8B5_ANAD2 0.38 0.55 1 66 50 118 71 6 7 338 B8J8B5 Uncharacterized protein (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_2073 PE=4 SV=1
46 : D7AEB2_GEOSK 0.38 0.51 2 67 22 90 69 3 3 95 D7AEB2 Cytochrome c, 3 heme-binding sites OS=Geobacter sulfurreducens (strain DL-1 / KN400) GN=ppcC PE=4 SV=1
47 : Q2IJ34_ANADE 0.38 0.55 1 66 46 114 71 6 7 335 Q2IJ34 Uncharacterized protein (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1891 PE=4 SV=1
48 : Q74G82_GEOSL3H33 0.38 0.51 2 67 22 90 69 3 3 95 Q74G82 Cytochrome c OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=ppcC PE=1 SV=1
49 : A1AUT1_PELPD 0.37 0.55 1 68 21 91 71 3 3 91 A1AUT1 Cytochrome c3 (Precursor) OS=Pelobacter propionicus (strain DSM 2379) GN=Ppro_3509 PE=4 SV=1
50 : B4UCY8_ANASK 0.37 0.57 1 68 23 91 70 3 3 92 B4UCY8 Cytochrome c class III (Precursor) OS=Anaeromyxobacter sp. (strain K) GN=AnaeK_2158 PE=4 SV=1
51 : B8JA67_ANAD2 0.37 0.57 1 68 23 91 70 3 3 92 B8JA67 Cytochrome c class III (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=A2cp1_2248 PE=4 SV=1
52 : H1L904_GEOME 0.37 0.53 2 66 25 92 68 3 3 95 H1L904 Cytochrome c3 (Precursor) OS=Geobacter metallireducens RCH3 GN=GeomeDRAFT_2501 PE=4 SV=1
53 : Q2IIJ4_ANADE 0.37 0.57 1 68 23 91 70 3 3 92 Q2IIJ4 Cytochrome c, class III (Precursor) OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1697 PE=4 SV=1
54 : Q39QU6_GEOMG 0.37 0.53 2 66 25 92 68 3 3 95 Q39QU6 Cytochrome c OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ppcC PE=4 SV=1
55 : Q3A435_PELCD 0.36 0.60 1 66 34 98 67 3 3 101 Q3A435 Cytochrome c OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ppcA PE=4 SV=2
56 : D4H3I1_DENA2 0.34 0.49 8 68 436 503 70 4 11 503 D4H3I1 Uncharacterized protein (Precursor) OS=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) GN=Dacet_0467 PE=4 SV=1
57 : S7TCB0_DESML 0.34 0.50 4 66 41 104 68 4 9 145 S7TCB0 Cytochrome c, class III, conserved region (Precursor) OS=Desulfococcus multivorans DSM 2059 GN=dsmv_3397 PE=4 SV=1
58 : B9M783_GEODF 0.33 0.45 1 67 22 87 69 3 5 95 B9M783 Cytochrome c3 (Precursor) OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) GN=Geob_1813 PE=4 SV=1
59 : V4IF16_9DELT 0.33 0.45 13 68 73 136 67 5 14 138 V4IF16 Uncharacterized protein OS=uncultured Desulfofustis sp. PB-SRB1 GN=N839_14800 PE=4 SV=1
60 : B8FAX8_DESAA 0.32 0.38 1 68 34 118 85 6 17 119 B8FAX8 Cytochrome c7 (PpcA) (Precursor) OS=Desulfatibacillum alkenivorans (strain AK-01) GN=Dalk_2371 PE=4 SV=1
61 : E8WHI0_GEOS8 0.32 0.44 1 66 22 93 72 3 6 96 E8WHI0 Cytochrome c, class III, conserved region (Precursor) OS=Geobacter sp. (strain M18) GN=GM18_1817 PE=4 SV=1
## ALIGNMENTS 1 - 61
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 96 49 31 AAAAAS AAAAAAAAAAAAAAA AAA AAAPPAPAAAAT APP P SAA A A S AN
2 2 A D - 0 0 123 55 44 DDDDDD DDDDDDDDDDDDDDD DDDTDDAAADADDDDAGDSSDSDDAAEAES E AD
3 3 A V B -A 16 0A 72 57 77 VSSSTVVVTTSVTTTVTTTTVVV EEDVDDPTTTTTVTVPVVKKKKKVPPTPTN V QR
4 4 A V - 0 0 77 60 46 VVVVVIVVVIYIIIIIMLLMIIIVVLLIVIIALLMLMFYFVYIVVIVIITTITII II MM
5 5 A T - 0 0 44 60 66 TVVVVTVVVTETSTTTTTTTLSLVVTTVVVVTTTITIEEETKEVVTVTEVVTVTG VP TE
6 6 A Y - 0 0 86 60 45 YYYYLYLLMLYLLLLMFFFFFLFLLFFLLLLLLLFLFFYFLYLRRYRYFLLFLFQ FM LF
7 7 A E + 0 0 152 60 67 EPPPKAEEKPKPPPEPTPPTPPPPPKKKQKKEQQPQPPTPEEPTTPTPPKKPKPN TK NP
8 8 A N > - 0 0 58 61 47 NAAAAEAAAAGAAAAAAAAASASAAAAAAAAAAAAAAAGAAGATTTTTSAANANGTGN GN
9 9 A A T 3 S+ 0 0 123 61 37 KKKKKgKKKKgKKKKKKKKKKKKKKKKKKKKKKKKKKSKSKaSkkRkRSKKRKRKKAK gK
10 10 A A T 3 S- 0 0 78 57 70 KNNNNkNNNNmNNNNNNNNNNNNNNNNNNNNNPPNPNM.MNkMyyIyIINNINI..G. tK
11 11 A G < - 0 0 12 60 5 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDPG. GG
12 12 A N - 0 0 57 60 60 NNNNNSNNNNKDNNNDNNNNANANNDDDNDDNNNNNNKTKNVKTTATAKDDQDQDAS. DT
13 13 A V - 0 0 30 62 3 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVIVVVVIVVVVVVVVVVVVIVVVVVV
14 14 A T - 0 0 60 62 50 TTTTTTTTTTATTTTTTSSTTTTTTKKKTKKTTTTTTTTTTTMTTVTVTTTSTSRQVRAPV
15 15 A F - 0 0 52 62 2 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLFLFFFFFFFFFFFYFF
16 16 A D B >> +A 3 0A 39 62 63 DNNNDDDDDNPNENNNDGGDTNTPPPPPPPPNPPNPNPNPEDPDDPDPTNNPNPPEDNTPN
17 17 A H T 45S+ 0 0 84 62 3 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHH
18 18 A K T >5S+ 0 0 95 62 36 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKSNKAAKAKKKKKKKSKAFGGK
19 19 A A T 45S+ 0 0 46 62 72 AAAGKSKKKKAKKMKKKKKKRKRKKKKAKAATAAHAHMMMKMKAAKAKATTKTKRDTNMQK
20 20 A H T >X5S+ 0 0 78 62 3 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHH
21 21 A A H 3>> S+ 0 0 81 62 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
27 27 A D G >4 S+ 0 0 109 62 63 DKKKKKKKKKAKKKKKAKKARKRTTKKKTKKEEEKEKKSKESKKKRKRQEERERNATFEDK
28 28 A A G 34 S+ 0 0 62 62 78 AVVVSnAASAKAAIVVVAAVSVSDDKKKNKKTTTNTNKSKTSKSSGSGKTTGTGITAQTAV
29 29 A C G <4 S+ 0 0 74 62 0 CCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
30 30 A H S << S- 0 0 33 62 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
31 31 A E S S- 0 0 197 62 55 EgggggeegEEEEEGEGEEGEEEeeEEEeEEAaaDaDEtEaEEggEgEaaaEaEReHVygD
32 32 A G S S+ 0 0 75 61 74 GggggaeegKGKKKDKKKKKKKKddKKKdKKSaaKaKNqNaGKggKgKpaaKaKDf.EgiG
33 33 A T S S- 0 0 118 61 61 TAAATTAATAAGGGKGTAATTATKKGGGKGGAAATATGPGEEGAAGAGAAAGAGNE.EMDE
34 34 A P + 0 0 88 61 49 PPPPPPGGPPPPPPTPPPPPPPPGGPPPGPPAGGPGPPPPGPPVVPVPGGGPGPIP.PPKV
35 35 A A - 0 0 67 61 38 AAAAAAGGAGKGGGGGGGGGGGGGGGGGGGGGGGGGGGQGGAGTTGTGGGGGGGAG.AKNG
36 36 A K - 0 0 205 62 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKGKKRKRKKKKKKKKRKRTKKEKEKEHRKKP
37 37 A I - 0 0 95 62 16 IIIILIIILIIIIIIIIIIIIIIIIIIIIIIKIIIIIIIIIIIIIIIIIIIIIIIVPIIAI
38 38 A A - 0 0 85 62 65 AAAATAAATEEEEEEDEEEERERAAEEEAEELEEAEAKAKEDKVVDEDAEEDEDRKQKEDQ
39 39 A I + 0 0 39 61 73 IIIILVGG.GMGGGNGGGGGNGNNNGGGDGGEGGNGNDIDGVEFFGFGGGGGGGLGDGTGT
40 40 A D > - 0 0 57 62 74 DNNNGDMMLFNFFFFFFFFFFFFLLFFFLFFLFFFFFFTFFSLTTFTFFFFFFFDTPFYSF
41 41 A K T 4 S+ 0 0 183 62 57 KKKKKKGGGGKGGGNGGGGGGGGGGGGGSGGDGGGGGGGGGSGPPDPDDGGDGDQKGGKLG
42 42 A K T >> S+ 0 0 127 62 33 KDEEDKKKKKDKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKMKRRKRKKKKKKKQNEKGKK
43 43 A S H 3>>S+ 0 0 42 62 61 SAAAATDDDDVDDEDDEDDEDDDEEDDEDEEEDDDDDDKDESDQQVQVDEEVEVQAGDASA
44 44 A A H 3<5S+ 0 0 25 62 92 AAAAAAWWAAAFALAFMWWMYWYWWWWMWMMKKKYKYWEWKAWAAMAMWKKLKLGFAWAKF
45 45 A H H <45S+ 0 0 94 62 50 HHHHHHAAAAHAAAAAAAAAAAAAAAAAAAAGAAAAAAGAAGAHHAHAAAAAAAHHAGHAA
46 46 A K H <5S- 0 0 141 62 48 KGGGKGHHHHNHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHDHHHHHHHGEMHEVH
47 47 A D T X>S+ 0 0 92 61 69 DKKK.KKKKKKKKKKKgKKgKKKKKKKgKggAGGKGKKAKAGKTTgTgKAAgAgRELENmR
48 48 A A T 45S+ 0 0 76 62 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
50 50 A K H >5S+ 0 0 41 62 57 KKKKKKTTKKVKKKKKKKKKKKKKKKKKKKKVIIKIKKLKIGKRRKRKKIIKIKLIKKKTI
51 51 A T H X5S+ 0 0 49 62 45 TEEEGIGGGGKGGGGGGGGGGGGGGGGGGGGEEEGEGGDGEGGSSGSGGEEGEGDKAGGGG
52 52 A C H >4<>S+ 0 0 44 62 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
54 54 A K H 3<5S+ 0 0 115 62 69 KAAAEKKKEEKSEEESEEEEEAETTEEETEEKKKEKETKTKETVVEVEVKKEKERKVTEKE
55 55 A S T <<5S+ 0 0 101 62 71 SAAAtNeettadteedeqqevdvddeeeeeekkkvkvekeKqeqqeqeeKKaKaNeikqep
56 56 A N T < 5S- 0 0 89 62 61 NKKKkAggkkkgkkkgkkkkgggggkkkgkkaaagagkgkeekkkkkkkeekekkkdtngk
57 57 A N T 5S+ 0 0 186 57 70 NGGGAGKKAAKAAAAAKAAKAAAKKKKKKKKKKKTKTKaKk.K..I.IKkkRkRr.sRatp
58 58 A G S S- 0 0 163 62 56 KKKKKRKKKKGKKKKKKKKKKKKKKKKKKKKKKKRKRGSGKSADDRDRSKKLKLDSARKST
62 62 A C G >> S+ 0 0 97 62 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
63 63 A G G 34 S+ 0 0 37 62 68 GGGGGGGGGGKGGGGGGGGGKSKTTGGGNGGAAAGAGTSTATKRRGRGKAAKAKGSLSMRD
64 64 A G G <4 S+ 0 0 38 62 54 GDDDEEEEEEDEEEEEEEEELELEEDDEDEEEEELELDQDEFDGGDGDEEEGEGGTDGPGG
65 65 A C T <4 S+ 0 0 61 62 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
66 66 A H S < S- 0 0 36 62 0 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
67 67 A I 0 0 102 52 30 IKKKKVKKKKKKKKKKKKKK K KKKKKKKKKKKRKRKKKKSK K KKKK K K KPQ
68 68 A K 0 0 237 49 0 KKKKKKKKKKKKKKKKKKKK K KKKKKKKKKKKKKKKKKKKK KKK K K KK
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 78 12 6 2 0 0 0 0 0 0 2 0 49 0 0 0.784 26 0.68
2 2 A 0 0 0 0 0 0 0 2 16 0 7 2 0 0 0 0 0 5 0 67 55 0 0 1.058 35 0.56
3 3 A 30 0 0 0 0 0 0 0 0 9 7 32 0 0 2 9 2 4 2 5 57 0 0 1.824 60 0.23
4 4 A 27 12 37 10 3 0 5 0 2 0 0 5 0 0 0 0 0 0 0 0 60 0 0 1.682 56 0.53
5 5 A 33 3 3 0 0 0 0 2 0 2 3 40 0 0 0 2 0 12 0 0 60 0 0 1.528 51 0.33
6 6 A 0 42 0 5 28 0 18 0 0 0 0 0 0 0 5 0 2 0 0 0 60 0 0 1.401 46 0.55
7 7 A 0 0 0 0 0 0 0 0 2 43 0 12 0 0 0 20 7 13 3 0 60 0 0 1.566 52 0.32
8 8 A 0 0 0 0 0 0 0 10 64 0 5 10 0 0 0 0 0 2 10 0 61 0 0 1.186 39 0.53
9 9 A 0 0 0 0 0 0 0 5 5 0 7 0 0 0 7 77 0 0 0 0 61 4 7 0.854 28 0.63
10 10 A 0 0 9 7 0 0 5 2 2 5 0 2 0 0 0 7 0 0 61 0 57 0 0 1.409 47 0.30
11 11 A 0 0 0 0 0 0 0 97 0 2 0 0 0 0 0 0 0 0 0 2 60 0 0 0.169 5 0.94
12 12 A 2 0 0 0 0 0 0 0 8 0 3 8 0 0 0 8 3 0 47 20 60 0 0 1.594 53 0.40
13 13 A 94 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62 0 0 0.239 7 0.96
14 14 A 6 0 0 2 0 0 0 0 3 2 6 68 0 0 3 8 2 0 0 0 62 0 0 1.242 41 0.50
15 15 A 0 5 0 0 94 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 62 0 0 0.275 9 0.97
16 16 A 0 0 0 0 0 0 0 3 0 34 0 6 0 0 0 0 0 5 29 23 62 0 0 1.496 49 0.37
17 17 A 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0 2 0 0 62 0 0 0.083 2 0.97
18 18 A 0 0 0 0 2 0 0 3 6 0 3 0 0 0 0 84 0 0 2 0 62 0 0 0.679 22 0.63
19 19 A 0 0 0 10 0 0 0 2 24 0 2 8 0 3 5 42 2 0 2 2 62 0 0 1.727 57 0.27
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 98 0 0 0 2 0 0 62 0 0 0.083 2 0.97
21 21 A 2 5 0 3 0 0 0 3 23 0 10 3 0 0 0 5 45 2 0 0 62 7 45 1.680 56 0.27
22 22 A 15 5 4 7 4 0 4 2 24 2 4 9 0 0 5 9 0 7 0 0 55 0 0 2.384 79 0.11
23 23 A 15 34 2 0 0 0 2 0 11 0 2 3 0 0 0 21 0 7 0 3 61 0 0 1.832 61 0.16
24 24 A 6 13 5 3 2 0 0 24 0 8 0 0 0 0 3 21 2 3 8 2 62 0 0 2.197 73 0.10
25 25 A 0 0 0 0 0 0 0 6 3 0 8 3 0 0 0 21 3 24 3 27 62 0 0 1.849 61 0.37
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
27 27 A 0 0 0 0 2 0 0 0 6 0 3 6 0 0 10 50 2 15 2 5 62 0 0 1.663 55 0.36
28 28 A 15 0 3 0 0 0 0 6 18 0 15 16 0 0 0 16 2 0 6 3 62 0 1 2.097 70 0.22
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 62 0 0 0.000 0 1.00
31 31 A 2 0 0 0 0 0 2 21 15 0 0 2 0 2 2 0 0 52 0 5 62 1 26 1.428 47 0.45
32 32 A 0 0 2 0 2 0 0 23 13 2 2 0 0 0 0 39 2 5 3 8 61 0 0 1.773 59 0.26
33 33 A 0 0 0 2 0 0 0 26 34 2 0 18 0 0 0 7 0 8 2 2 61 0 0 1.680 56 0.39
34 34 A 7 0 2 0 0 0 0 21 2 66 0 2 0 0 0 2 0 0 0 0 61 0 0 1.054 35 0.51
35 35 A 0 0 0 0 0 0 0 70 18 0 0 5 0 0 0 3 2 0 2 0 61 0 0 0.950 31 0.62
36 36 A 0 0 0 0 0 0 0 2 0 2 0 2 0 2 8 81 0 5 0 0 62 0 0 0.789 26 0.72
37 37 A 2 3 90 0 0 0 0 0 2 2 0 0 0 0 0 2 0 0 0 0 62 0 0 0.469 15 0.84
38 38 A 3 2 0 0 0 0 0 0 24 0 0 3 0 0 5 8 3 40 0 11 62 1 0 1.704 56 0.34
39 39 A 3 3 10 2 5 0 0 52 0 0 0 3 0 0 0 0 0 3 11 7 61 0 0 1.657 55 0.27
40 40 A 0 10 0 3 58 0 2 2 0 2 3 8 0 0 0 0 0 0 6 6 62 0 0 1.520 50 0.26
41 41 A 0 2 0 0 0 0 0 61 0 5 3 0 0 0 0 16 2 0 2 10 62 0 0 1.277 42 0.42
42 42 A 0 0 0 2 0 0 0 2 0 0 0 0 0 0 5 79 2 5 2 5 62 0 0 0.892 29 0.67
43 43 A 8 0 0 0 0 0 0 2 11 0 6 2 0 0 0 2 6 21 0 42 62 0 0 1.695 56 0.39
44 44 A 0 5 0 11 6 24 6 2 29 0 0 0 0 0 0 15 0 2 0 0 62 0 0 1.862 62 0.08
45 45 A 0 0 0 0 0 0 0 6 71 0 0 0 0 23 0 0 0 0 0 0 62 0 0 0.756 25 0.49
46 46 A 2 0 0 2 0 0 0 8 0 0 0 0 0 74 0 5 0 6 2 2 62 1 0 1.014 33 0.51
47 47 A 0 2 0 2 0 0 0 21 10 0 0 5 0 0 3 49 0 3 2 3 61 5 10 1.593 53 0.30
48 48 A 2 23 0 2 0 0 0 12 11 0 7 40 0 0 0 2 2 0 0 0 57 0 0 1.668 55 0.25
49 49 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
50 50 A 3 3 15 0 0 0 0 2 0 0 0 5 0 0 5 68 0 0 0 0 62 0 0 1.125 37 0.43
51 51 A 0 0 2 0 0 0 0 65 2 0 5 3 0 0 0 3 0 18 0 3 62 0 0 1.202 40 0.55
52 52 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
53 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 62 0 0 0.000 0 1.00
54 54 A 8 0 0 0 0 0 0 0 6 0 3 11 0 0 2 27 0 42 0 0 62 0 0 1.523 50 0.30
55 55 A 6 0 2 0 0 0 0 0 10 2 3 6 0 0 0 16 11 32 3 8 62 0 51 2.043 68 0.28
56 56 A 0 0 0 0 0 0 0 23 8 0 0 2 0 0 0 53 0 8 5 2 62 5 10 1.357 45 0.39
57 57 A 0 0 4 0 0 0 0 7 26 2 2 5 0 0 7 44 0 0 4 0 57 0 0 1.618 53 0.29
58 58 A 2 2 0 0 0 0 0 92 2 0 0 0 0 0 0 2 0 0 0 2 62 0 0 0.410 13 0.82
59 59 A 0 0 0 2 0 2 0 0 0 95 0 0 0 0 0 2 0 0 0 0 62 0 0 0.247 8 0.85
60 60 A 11 0 2 0 0 0 0 0 8 0 2 69 0 0 0 5 3 0 0 0 62 0 0 1.094 36 0.52
61 61 A 0 3 0 0 0 0 0 5 3 0 8 2 0 0 10 63 0 0 0 6 62 0 0 1.332 44 0.44
62 62 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
63 63 A 0 2 0 2 0 0 0 48 13 0 6 8 0 0 6 11 0 0 2 2 62 0 0 1.685 56 0.32
64 64 A 0 6 0 0 2 0 0 18 0 2 0 2 0 0 0 0 2 48 0 21 62 0 0 1.429 47 0.46
65 65 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 62 0 0 0.000 0 1.00
66 66 A 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 62 0 0 0.000 0 1.00
67 67 A 2 0 4 0 0 0 0 0 0 2 2 0 0 0 4 85 2 0 0 0 52 0 0 0.696 23 0.70
68 68 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 49 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
2 32 52 1 gDg
3 32 52 1 gDg
4 32 52 1 gDg
5 32 52 1 gEg
5 55 76 1 tKk
6 10 30 2 gCKk
6 22 44 2 gEFv
6 29 53 2 nAAc
6 32 58 1 gDa
7 20 43 1 aGv
7 30 54 1 eTe
7 54 79 1 eMg
8 20 43 1 aGv
8 30 54 1 eTe
8 54 79 1 eMg
9 32 52 1 gEg
9 55 76 1 tKk
10 22 42 1 qEa
10 56 77 1 tKk
11 10 30 1 gAm
11 55 76 1 aEk
12 22 42 1 qDt
12 56 77 1 dKg
13 22 42 1 qEs
13 56 77 1 tKk
14 22 42 1 qDt
14 56 77 1 eKk
15 22 42 1 qEt
15 56 77 1 eKk
16 22 42 1 qDt
16 56 77 1 dKg
17 22 42 1 qTi
17 48 69 1 gKs
17 56 78 1 eMk
18 22 42 1 qQv
18 56 77 1 qKk
19 22 42 1 qQv
19 56 77 1 qKk
20 22 42 1 qTi
20 48 69 1 gKs
20 56 78 1 eMk
21 22 42 1 sEf
21 56 77 1 vRg
22 22 42 1 qEa
22 56 77 1 dKg
23 22 42 1 sEf
23 56 77 1 vRg
24 19 44 2 qDMk
24 29 56 1 eTd
24 53 81 1 dKg
25 19 44 2 kDMk
25 29 56 1 eTd
25 53 81 1 dKg
26 22 42 1 qQv
26 56 77 1 eMk
27 22 42 1 qQv
27 56 77 1 eMk
28 22 42 1 qKa
28 48 69 1 gKg
28 56 78 1 eMk
29 21 44 2 kDMp
29 31 56 1 eTd
29 55 81 1 eKg
30 22 42 1 qKa
30 48 69 1 gKg
30 56 78 1 eMk
31 22 42 1 qKa
31 48 69 1 gKg
31 56 78 1 eMk
32 55 79 1 kEa
33 22 45 1 aDk
33 32 56 1 aTa
33 56 81 1 kEa
34 22 45 1 aDk
34 32 56 1 aTa
34 56 81 1 kEa
35 22 42 1 tDl
35 56 77 1 vRg
36 22 45 1 aDk
36 32 56 1 aTa
36 56 81 1 kEa
37 22 42 1 tDl
37 56 77 1 vRg
38 22 44 1 qEm
38 56 79 1 eLk
39 31 52 1 tTq
39 55 77 4 kEQKKg
39 56 82 2 gNKa
40 22 44 1 qEm
40 56 79 1 eLk
41 31 53 1 aTa
41 56 79 1 eAk
42 9 60 1 aTk
42 21 73 2 kEMm
42 55 109 1 qVe
43 22 47 1 qEm
43 56 82 4 eGFNGk
44 10 59 1 kTy
44 22 72 1 lAr
44 32 83 1 gNg
44 55 107 2 qIAk
45 10 59 1 kTy
45 22 72 1 lAr
45 32 83 1 gNg
45 55 107 2 qIAk
46 21 42 1 qDa
46 47 69 1 gKg
46 55 78 1 eMk
47 10 55 1 kTy
47 22 68 1 lAr
47 32 79 1 gNg
47 55 103 2 qLAk
48 21 42 1 qDa
48 47 69 1 gKg
48 55 78 1 eMk
49 22 42 1 qEl
49 32 53 1 aSp
49 56 78 1 eMk
50 31 53 1 aTa
50 56 79 1 eAk
51 31 53 1 aTa
51 56 79 1 eAk
52 21 45 1 qDa
52 47 72 1 gKg
52 55 81 1 aMk
53 31 53 1 aTa
53 56 79 1 eAk
54 21 45 1 qDa
54 47 72 1 gKg
54 55 81 1 aMk
55 55 88 1 kGr
56 24 459 8 eDPEAGLLKf
56 48 491 1 eMk
57 19 59 2 aAGy
57 49 91 2 iPDd
57 50 94 1 dGs
58 19 40 1 mNy
58 53 75 1 kMt
59 18 90 3 yKGSg
59 41 116 4 qVAAEn
59 42 121 4 nAELAa
60 10 43 1 gKt
60 22 56 1 qTt
60 32 67 8 gMFPQEKGVi
60 48 91 1 mNq
60 56 100 4 eMKKAg
60 57 105 2 gEKt
61 22 43 2 eKLv
61 56 79 3 pEAGk
61 57 83 1 kLp
//