Complet list of 1koy hssp file
Complete list of 1koy.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1KOY
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER APOPTOSIS 25-DEC-01 1KOY
COMPND MOL_ID: 1; MOLECULE: DNA FRAGMENTATION FACTOR ALPHA SUBUNIT; CHAIN: A;
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR K.FUKUSHIMA,J.KIKUCHI,S.KOSHIBA,T.KIGAWA,Y.KURODA, S.YOKOYAMA,RIKEN ST
DBREF 1KOY A 239 300 UNP O00273 DFFA_HUMAN 239 300
SEQLENGTH 62
NCHAIN 1 chain(s) in 1KOY data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : DFFA_HUMAN 1.00 1.00 1 62 239 300 62 0 0 331 O00273 DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1 SV=1
2 : Q53HN4_HUMAN 1.00 1.00 1 62 239 300 62 0 0 331 Q53HN4 DNAation factor, 45kDa, alpha polypeptide isoform 1 variant (Fragment) OS=Homo sapiens PE=2 SV=1
3 : G3RAD6_GORGO 0.98 0.98 1 61 239 299 61 0 0 331 G3RAD6 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101124259 PE=4 SV=1
4 : G1RE60_NOMLE 0.97 0.98 1 61 239 299 61 0 0 331 G1RE60 Uncharacterized protein OS=Nomascus leucogenys GN=DFFA PE=4 SV=1
5 : H2N957_PONAB 0.97 0.98 1 61 239 299 61 0 0 331 H2N957 Uncharacterized protein OS=Pongo abelii GN=DFFA PE=4 SV=1
6 : F7HGW2_MACMU 0.95 0.98 1 61 239 299 61 0 0 331 F7HGW2 DNAation factor subunit alpha isoform 1 OS=Macaca mulatta GN=DFFA PE=2 SV=1
7 : G7MGU1_MACMU 0.95 0.98 1 61 239 299 61 0 0 331 G7MGU1 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_00215 PE=4 SV=1
8 : G7NU60_MACFA 0.95 0.98 1 61 239 299 61 0 0 331 G7NU60 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_00206 PE=4 SV=1
9 : K7BEQ1_PANTR 0.95 0.97 1 61 239 299 61 0 0 331 K7BEQ1 DNAation factor, 45kDa, alpha polypeptide OS=Pan troglodytes GN=DFFA PE=2 SV=1
10 : K7DGT5_PANTR 0.95 0.97 1 61 239 299 61 0 0 331 K7DGT5 DNAation factor, 45kDa, alpha polypeptide OS=Pan troglodytes GN=DFFA PE=2 SV=1
11 : F7I3W2_CALJA 0.93 0.97 1 61 239 299 61 0 0 331 F7I3W2 DNAation factor subunit alpha isoform 1 OS=Callithrix jacchus GN=DFFA PE=2 SV=1
12 : H2PXZ7_PANTR 0.93 0.97 1 61 239 299 61 0 0 331 H2PXZ7 Uncharacterized protein OS=Pan troglodytes GN=DFFA PE=4 SV=1
13 : L5KIE4_PTEAL 0.89 0.98 1 61 239 299 61 0 0 331 L5KIE4 DNAation factor subunit alpha OS=Pteropus alecto GN=PAL_GLEAN10013012 PE=4 SV=1
14 : S7N7T8_MYOBR 0.87 0.98 1 61 239 299 61 0 0 331 S7N7T8 DNAation factor subunit alpha OS=Myotis brandtii GN=D623_10021994 PE=4 SV=1
15 : F6QF18_HORSE 0.85 0.98 1 61 239 299 61 0 0 334 F6QF18 Uncharacterized protein OS=Equus caballus GN=DFFA PE=4 SV=1
16 : G1NSQ7_MYOLU 0.85 0.97 1 61 239 299 61 0 0 331 G1NSQ7 Uncharacterized protein OS=Myotis lucifugus GN=DFFA PE=4 SV=1
17 : L5LNK7_MYODS 0.85 0.97 1 61 239 299 61 0 0 331 L5LNK7 DNAation factor subunit alpha OS=Myotis davidii GN=MDA_GLEAN10024390 PE=4 SV=1
18 : G3U5M0_LOXAF 0.84 0.95 1 61 240 300 61 0 0 332 G3U5M0 Uncharacterized protein OS=Loxodonta africana GN=DFFA PE=4 SV=1
19 : W5P4V7_SHEEP 0.84 0.97 1 61 239 299 61 0 0 331 W5P4V7 Uncharacterized protein OS=Ovis aries GN=DFFA PE=4 SV=1
20 : W5P4V8_SHEEP 0.84 0.97 1 61 239 299 61 0 0 334 W5P4V8 Uncharacterized protein OS=Ovis aries GN=DFFA PE=4 SV=1
21 : D2HXC0_AILME 0.82 0.98 1 61 194 254 61 0 0 286 D2HXC0 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_017262 PE=4 SV=1
22 : G1LJM9_AILME 0.82 0.98 1 61 232 292 61 0 0 324 G1LJM9 Uncharacterized protein OS=Ailuropoda melanoleuca GN=DFFA PE=4 SV=1
23 : L8IQE4_9CETA 0.82 0.97 1 61 237 297 61 0 0 329 L8IQE4 DNAation factor subunit alpha OS=Bos mutus GN=M91_12840 PE=4 SV=1
24 : Q0VC37_BOVIN 0.82 0.95 1 61 237 297 61 0 0 329 Q0VC37 DNAation factor, 45kDa, alpha polypeptide OS=Bos taurus GN=DFFA PE=2 SV=1
25 : DFFA_MOUSE 0.80 0.93 1 61 239 299 61 0 0 331 O54786 DNA fragmentation factor subunit alpha OS=Mus musculus GN=Dffa PE=1 SV=2
26 : H0X491_OTOGA 0.80 0.95 1 61 239 299 61 0 0 331 H0X491 Uncharacterized protein OS=Otolemur garnettii PE=4 SV=1
27 : U6CUU0_NEOVI 0.79 0.97 1 61 235 295 61 0 0 327 U6CUU0 DNAation factor subunit alpha OS=Neovison vison GN=DFFA PE=2 SV=1
28 : F1RHS7_PIG 0.78 0.95 2 61 241 300 60 0 0 332 F1RHS7 Uncharacterized protein OS=Sus scrofa GN=DFFA PE=4 SV=2
29 : G5C528_HETGA 0.77 0.90 1 62 239 300 62 0 0 331 G5C528 DNAation factor subunit alpha OS=Heterocephalus glaber GN=GW7_09118 PE=4 SV=1
30 : M1EQI3_MUSPF 0.75 0.93 1 61 179 239 61 0 0 270 M1EQI3 DNAation factor, 45kDa, alpha polypeptide (Fragment) OS=Mustela putorius furo PE=2 SV=1
31 : M3WKZ3_FELCA 0.75 0.89 1 61 234 294 61 0 0 326 M3WKZ3 Uncharacterized protein OS=Felis catus GN=DFFA PE=4 SV=1
32 : M3YYD5_MUSPF 0.75 0.93 1 61 235 295 61 0 0 327 M3YYD5 Uncharacterized protein OS=Mustela putorius furo GN=DFFA PE=4 SV=1
33 : F7DI42_MONDO 0.72 0.87 1 61 229 289 61 0 0 317 F7DI42 Uncharacterized protein OS=Monodelphis domestica GN=DFFA PE=4 SV=2
34 : H9GIB0_ANOCA 0.72 0.82 1 61 231 291 61 0 0 320 H9GIB0 Uncharacterized protein OS=Anolis carolinensis GN=DFFA PE=4 SV=2
35 : I3MC86_SPETR 0.70 0.87 1 61 237 297 61 0 0 329 I3MC86 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=DFFA PE=4 SV=1
36 : G3VR66_SARHA 0.69 0.82 1 61 196 256 61 0 0 284 G3VR66 Uncharacterized protein OS=Sarcophilus harrisii GN=DFFA PE=4 SV=1
37 : G3VR67_SARHA 0.69 0.82 1 61 196 256 61 0 0 288 G3VR67 Uncharacterized protein OS=Sarcophilus harrisii GN=DFFA PE=4 SV=1
38 : H0VD47_CAVPO 0.69 0.87 1 62 239 300 62 0 0 331 H0VD47 Uncharacterized protein OS=Cavia porcellus GN=DFFA PE=4 SV=1
39 : M7BUK6_CHEMY 0.69 0.85 1 61 234 294 61 0 0 323 M7BUK6 DNAation factor subunit alpha OS=Chelonia mydas GN=UY3_01239 PE=4 SV=1
40 : F7AC61_ORNAN 0.65 0.83 10 61 244 295 52 0 0 329 F7AC61 Uncharacterized protein OS=Ornithorhynchus anatinus GN=DFFA PE=4 SV=1
41 : F7AC71_ORNAN 0.65 0.83 10 61 244 295 52 0 0 325 F7AC71 Uncharacterized protein OS=Ornithorhynchus anatinus GN=DFFA PE=4 SV=1
42 : U3JXN5_FICAL 0.63 0.82 2 61 192 251 60 0 0 280 U3JXN5 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=DFFA PE=4 SV=1
43 : H0YYL4_TAEGU 0.62 0.85 1 61 234 294 61 0 0 323 H0YYL4 Uncharacterized protein (Fragment) OS=Taeniopygia guttata GN=DFFA PE=4 SV=1
44 : F1NBS6_CHICK 0.61 0.80 1 61 223 283 61 0 0 312 F1NBS6 Uncharacterized protein OS=Gallus gallus GN=DFFA PE=4 SV=2
45 : G1MZ55_MELGA 0.61 0.82 1 61 187 247 61 0 0 281 G1MZ55 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=DFFA PE=4 SV=1
46 : H1A1T8_TAEGU 0.61 0.85 1 61 94 154 61 0 0 172 H1A1T8 Uncharacterized protein (Fragment) OS=Taeniopygia guttata PE=4 SV=1
47 : K7FME1_PELSI 0.61 0.79 1 61 234 294 61 0 0 323 K7FME1 Uncharacterized protein OS=Pelodiscus sinensis GN=DFFA PE=4 SV=1
48 : K7FMF0_PELSI 0.61 0.79 1 61 237 297 61 0 0 329 K7FMF0 Uncharacterized protein (Fragment) OS=Pelodiscus sinensis GN=DFFA PE=4 SV=1
49 : R0KT85_ANAPL 0.59 0.80 1 61 133 193 61 0 0 222 R0KT85 DNAation factor subunit alpha (Fragment) OS=Anas platyrhynchos GN=DFFA PE=4 SV=1
50 : F1R3G3_DANRE 0.43 0.70 1 61 212 272 61 0 0 305 F1R3G3 Uncharacterized protein OS=Danio rerio GN=dffa PE=4 SV=1
51 : Q6DHM1_DANRE 0.43 0.70 1 61 212 272 61 0 0 305 Q6DHM1 DNAation factor, alpha polypeptide OS=Danio rerio GN=dffa PE=2 SV=1
52 : W5L119_ASTMX 0.43 0.66 1 61 221 281 61 0 0 305 W5L119 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
53 : H2LKD5_ORYLA 0.41 0.64 1 61 225 285 61 0 0 312 H2LKD5 Uncharacterized protein OS=Oryzias latipes GN=LOC101160906 PE=4 SV=1
54 : H2U2A8_TAKRU 0.41 0.62 1 61 242 302 61 0 0 311 H2U2A8 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078002 PE=4 SV=1
55 : H2U2A9_TAKRU 0.41 0.62 1 61 234 294 61 0 0 303 H2U2A9 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101078002 PE=4 SV=1
56 : H2U2B0_TAKRU 0.41 0.62 1 61 238 298 61 0 0 307 H2U2B0 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101078002 PE=4 SV=1
57 : H2U2B1_TAKRU 0.41 0.62 1 61 213 273 61 0 0 282 H2U2B1 Uncharacterized protein OS=Takifugu rubripes GN=LOC101078002 PE=4 SV=1
58 : I3J220_ORENI 0.41 0.62 1 61 224 284 61 0 0 321 I3J220 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100704246 PE=4 SV=1
59 : G3NVL7_GASAC 0.39 0.62 1 61 224 284 61 0 0 304 G3NVL7 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
60 : G3NVM6_GASAC 0.39 0.62 1 61 233 293 61 0 0 313 G3NVM6 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
61 : H3AY22_LATCH 0.39 0.69 1 61 233 293 61 0 0 314 H3AY22 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
62 : H3AY23_LATCH 0.39 0.69 1 61 222 282 61 0 0 303 H3AY23 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
63 : H3DCI9_TETNG 0.39 0.64 1 61 222 282 61 0 0 291 H3DCI9 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
64 : M4AA15_XIPMA 0.39 0.61 1 61 241 301 61 0 0 316 M4AA15 Uncharacterized protein (Fragment) OS=Xiphophorus maculatus PE=4 SV=1
65 : Q4RVM9_TETNG 0.39 0.64 1 61 222 282 61 0 0 292 Q4RVM9 Chromosome 9 SCAF14991, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00028260001 PE=4 SV=1
66 : Q5CZL3_XENTR 0.38 0.66 1 61 240 300 61 0 0 315 Q5CZL3 Dffa-prov protein (Fragment) OS=Xenopus tropicalis GN=dffa-prov PE=2 SV=1
67 : W5MHN8_LEPOC 0.38 0.72 2 61 231 290 60 0 0 319 W5MHN8 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
68 : V9KT67_CALMI 0.36 0.62 1 61 229 289 61 0 0 310 V9KT67 DNAation factor subunit alpha-like protein OS=Callorhynchus milii PE=2 SV=1
69 : V9KX62_CALMI 0.36 0.62 1 61 155 215 61 0 0 236 V9KX62 DNAation factor subunit alpha (Fragment) OS=Callorhynchus milii PE=2 SV=1
70 : V9L2D0_CALMI 0.36 0.64 1 61 91 151 61 0 0 172 V9L2D0 DNAation factor subunit alpha-like protein (Fragment) OS=Callorhynchus milii PE=2 SV=1
71 : V9L2L6_CALMI 0.36 0.64 1 61 114 174 61 0 0 195 V9L2L6 DNAation factor subunit alpha-like protein (Fragment) OS=Callorhynchus milii PE=2 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 239 A S > 0 0 117 67 39 SSSSSSSSSSSSSSSSSSSSSSSSSGG SGSGSSGSSGS GDNGDDDSSSSSSSSSSSDDSSSS PPP
2 240 A H H > + 0 0 164 70 60 HHHHHHHHHHHHQQQQQQQQQQQQQQQQQQQQHHQPPQG QQHQQEEHTTGRRRRRRRRRRRRRHRHHH
3 241 A I H > S+ 0 0 107 70 49 IIIIIIIIIIIIIILIIVIIVVIIIIVVVVIVVIIVVTI VVIIVIILTTTTTTTTTTTIITTTITIII
4 242 A L H > S+ 0 0 89 70 13 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLFFLLLLLLLLLLLLLLLVVLLLMLIII
5 243 A T H < S+ 0 0 84 70 80 TTTTTTTTTTTTTTTTTTLLTTLLTTTISTTTTTTRRSA AAAAAAAAMMLMMMMMMMMSSMMMEMGGG
6 244 A A H <>S+ 0 0 37 70 55 AAAAAAAAAAAAAAAVTVAAAAAATAAAAAVAVAVVVTA AAVVAAAVVVVVVVVVVVVVVVVVIVVVV
7 245 A L H <5S+ 0 0 9 70 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLL
8 246 A R T <5S+ 0 0 153 70 40 RRRRRRRRRRRRKKKKTKKKKKKKKKKKQKKKKRKKKQK KKKKKKKKRRKKKKKKKKKLLKKKKKEEE
9 247 A E T 5S- 0 0 134 70 53 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE EEEEEKKGDDGGGGGGGGGKKGGGKGKKK
10 248 A K T 5 + 0 0 148 72 1 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKK
11 249 A Q < - 0 0 18 72 69 QQPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSTPFFPPPPPRPPRPPPRRTTTTTTTTTTTTTTDTDND
12 250 A A > + 0 0 24 72 62 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAFAVSSAASSAAAAAAAVYYSSNNNNSSSSSSSSLSSSS
13 251 A P T 5S+ 0 0 2 72 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
14 252 A E T 5S- 0 0 32 72 3 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEHEEEE
15 253 A L T 5S+ 0 0 119 72 56 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLTTTTTTTTTTTIITTTLTFFF
16 254 A S T 5S+ 0 0 96 72 55 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSCCCCCSSCRRRRRRRRRRRGGRRRSRSSS
17 255 A L S - 0 0 81 72 20 SSSSSSSSSSSSSSSSSSSSSSSSSSSSCSSSSDSSSCDSSDDDDDSSDSSSSSSSSSSSSSSSSSSSSS
19 257 A S H > S+ 0 0 93 72 55 SSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSNSSSSSSSSSSSSSSNNNTTTTTTTTNNTTTNNNNN
20 258 A Q H > S+ 0 0 136 72 46 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQRQQQQQRQQQQQQQQQQQQQEEMMMMGEERREEEKQEEE
21 259 A D H > S+ 0 0 77 72 20 DDDDNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDTTDAADEEEDDDDDDDDDDDDDEEEEE
22 260 A L H X S+ 0 0 11 72 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
23 261 A E H X S+ 0 0 109 72 31 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQQQQQQQQQQQQQQQEQQQQ
24 262 A L H < S+ 0 0 112 72 47 LLLLLLLLLLLLLLLLLLLLLLLLSLLLLLLLLLLLLLLLLLLLLLRRLMMMMMMMMMMMKKMAMNLEEE
25 263 A V H >< S+ 0 0 3 72 7 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIIIIVVVVVIVIVLVVV
26 264 A T H 3< S+ 0 0 48 72 70 TTTTTTTTTTTTTTTTTTAATTAASTTATTATTNTIITFTTLLVVLFFVVVVVVVVVVVVIIVVVNIIII
27 265 A K T 3< S+ 0 0 150 72 49 KKKKKRRRKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKQQKKKKKKKKKKKTSSSSSTTEEGSGENKKK
28 266 A E < - 0 0 40 72 56 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQQERRRRRRRREERRREEVVV
29 267 A D >> - 0 0 84 72 31 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDPDDHHDDDDDDDDDDDDGGDGGGGGGGGDDGGGNGDDD
30 268 A P H 3> S+ 0 0 38 72 71 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPTPPPTPPAATTATTTAAVVVVVVVVVTTVLVTAEEE
31 269 A K H 3> S+ 0 0 169 72 66 KKKKKKKKEEREKKKKKKKKKKKKKRRKQRGREDREEQESSAAQQAEEQKKKDEEEEEEEQQEEEERAAA
32 270 A A H <> S+ 0 0 51 72 21 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVAAAAAAAAAAAAAAAAVAAAAAAAAAAAAAVTGGG
33 271 A L H X S+ 0 0 2 72 9 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMLMMMMMMMMIIMMMLMLLL
34 272 A A H >< S+ 0 0 29 72 36 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAMMMKAAAAEEEAAVQVMSAAA
35 273 A V H >< S+ 0 0 93 72 90 VVVVVVVVVVVVVVVVVVVVVVVVVLVVSAAARQAQQALSSSSAASQQAEEDQEEEEQRRFFDQDMDTTT
36 274 A A H 3< S+ 0 0 12 72 55 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVTVVVVVVVVAAVVVSVDDD
37 275 A L T << S- 0 0 5 72 18 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLAAA
38 276 A N < + 0 0 125 72 70 NNNNNNNNNNNNNHKHHNNNSSNNSNSNNSSSSSNSSNCSSGGSGGRRSVVGGGGGGGGGSSGGGGGHHH
39 277 A W S S- 0 0 59 72 44 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWLLVVWWWWWCCC
40 278 A D > - 0 0 108 72 31 DDDDDDDDDDDDDDDDDDDDGGDDDDDDDDDDDEDNNDDDDDDDDNDDDDDEDDDDDDDDPPDDDKDSSS
41 279 A I H > S+ 0 0 102 72 86 IIIIIIIIIIIIIVIVVKIILLLLIMVIIVAVLKTPPSKKKKEKKKKKKSSRENNNNRRRLLDADEMIII
42 280 A K H > S+ 0 0 151 72 69 KKKKKRRRKKEKKKKKKKKKKKKKRKERKKEKETKKKKQEEQQQQQQQQEEEATTTTATTQQTGTQEQQQ
43 281 A K H > S+ 0 0 110 72 31 KKKKKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKRRKKKKKEEKRRRRRRRRRRREERRRKKKKK
44 282 A T H X S+ 0 0 0 72 39 TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTAVAAAATAAAAAAATTATTTTTTTTTTTAATTTIAAAA
45 283 A E H X S+ 0 0 64 72 68 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVEELEEEEEDDGGKEGQQESSISSSSSSSSKKSASLEKKK
46 284 A T H X S+ 0 0 75 72 55 TTTTTTTTTTTTTTTTTTAATTAATNTTATTTAATEEAAAAAAAAAAAAAASAAAAAAAAAAAAADNNNN
47 285 A V H X S+ 0 0 36 72 40 VVVVVVVVVVVVVVVVVVVVVVVVVVVVAVVVVLVVVALVVVLVVLLLLLLLLLLLLLLLLLLLLLVTTI
48 286 A Q H X S+ 0 0 14 72 66 QQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHQQQQQQQQVVVLLLLLLLLQQLLLKLKKK
49 287 A E H X S+ 0 0 77 72 53 EEEEEEEEEEEEHQQQQQQQQQQQQQQQQQQQGERRRQQRRAEQQEQQQQQQQQQQQQQQQQQQQAQYYY
50 288 A A H X S+ 0 0 45 72 23 AAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAASAEEE
51 289 A C H X S+ 0 0 0 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
52 290 A E H X S+ 0 0 74 72 54 EEEEEEEEEEDENENEEENNHHNNTKHGARNREEDEEADVVEEDDEDDDDDEEEEEEEEEAAEKEQEKKK
53 291 A R H X S+ 0 0 174 72 66 RRRRRRRRRRRQQQQQQQQQQQQQTQQQQQQQQQQEEQQQQQQQQQQQQNNEAAAAAAAAEEAAAQDKKK
54 292 A E H X S+ 0 0 71 72 4 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEQEEQQEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
55 293 A L H X S+ 0 0 62 72 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLL
56 294 A A H X S+ 0 0 47 72 66 AAAAAAAATTATSSSSGSSSSSSRATSSAGSGSSTAAASAASSSSSSSSSSNSTTTTTTTKKTSTKKEEE
57 295 A L H X S+ 0 0 104 72 90 LLLLLLLLLLLLLLLLLLLLLLLLLLLLRRLRLRLLLRRRRKKKKKRRKKKKRGGGGAGGRRRTRRKKKK
58 296 A R H < S+ 0 0 118 72 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
59 297 A L H >< S+ 0 0 98 72 11 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHLLLLLLLLLLLLLLLLLLLLLLLLDLLLL
60 298 A Q H 3< S+ 0 0 156 72 27 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRQQRQQQQQQQQQQQQQQQQQQQEESSS
61 299 A Q T 3< 0 0 149 72 19 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRRQQQQQQQQQQQQQQQKKKK
62 300 A T < 0 0 146 5 0 TT T T
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 239 A S > 0 0 117 67 39 P
2 240 A H H > + 0 0 164 70 60 H
3 241 A I H > S+ 0 0 107 70 49 I
4 242 A L H > S+ 0 0 89 70 13 I
5 243 A T H < S+ 0 0 84 70 80 G
6 244 A A H <>S+ 0 0 37 70 55 V
7 245 A L H <5S+ 0 0 9 70 0 L
8 246 A R T <5S+ 0 0 153 70 40 Q
9 247 A E T 5S- 0 0 134 70 53 K
10 248 A K T 5 + 0 0 148 72 1 K
11 249 A Q < - 0 0 18 72 69 D
12 250 A A > + 0 0 24 72 62 S
13 251 A P T 5S+ 0 0 2 72 0 P
14 252 A E T 5S- 0 0 32 72 3 E
15 253 A L T 5S+ 0 0 119 72 56 F
16 254 A S T 5S+ 0 0 96 72 55 S
17 255 A L S - 0 0 81 72 20 S
19 257 A S H > S+ 0 0 93 72 55 N
20 258 A Q H > S+ 0 0 136 72 46 E
21 259 A D H > S+ 0 0 77 72 20 E
22 260 A L H X S+ 0 0 11 72 0 L
23 261 A E H X S+ 0 0 109 72 31 Q
24 262 A L H < S+ 0 0 112 72 47 E
25 263 A V H >< S+ 0 0 3 72 7 V
26 264 A T H 3< S+ 0 0 48 72 70 I
27 265 A K T 3< S+ 0 0 150 72 49 K
28 266 A E < - 0 0 40 72 56 V
29 267 A D >> - 0 0 84 72 31 D
30 268 A P H 3> S+ 0 0 38 72 71 E
31 269 A K H 3> S+ 0 0 169 72 66 A
32 270 A A H <> S+ 0 0 51 72 21 G
33 271 A L H X S+ 0 0 2 72 9 L
34 272 A A H >< S+ 0 0 29 72 36 A
35 273 A V H >< S+ 0 0 93 72 90 T
36 274 A A H 3< S+ 0 0 12 72 55 D
37 275 A L T << S- 0 0 5 72 18 A
38 276 A N < + 0 0 125 72 70 H
39 277 A W S S- 0 0 59 72 44 C
40 278 A D > - 0 0 108 72 31 S
41 279 A I H > S+ 0 0 102 72 86 I
42 280 A K H > S+ 0 0 151 72 69 Q
43 281 A K H > S+ 0 0 110 72 31 K
44 282 A T H X S+ 0 0 0 72 39 A
45 283 A E H X S+ 0 0 64 72 68 K
46 284 A T H X S+ 0 0 75 72 55 N
47 285 A V H X S+ 0 0 36 72 40 T
48 286 A Q H X S+ 0 0 14 72 66 K
49 287 A E H X S+ 0 0 77 72 53 Y
50 288 A A H X S+ 0 0 45 72 23 E
51 289 A C H X S+ 0 0 0 72 0 C
52 290 A E H X S+ 0 0 74 72 54 K
53 291 A R H X S+ 0 0 174 72 66 K
54 292 A E H X S+ 0 0 71 72 4 E
55 293 A L H X S+ 0 0 62 72 0 L
56 294 A A H X S+ 0 0 47 72 66 E
57 295 A L H X S+ 0 0 104 72 90 K
58 296 A R H < S+ 0 0 118 72 0 R
59 297 A L H >< S+ 0 0 98 72 11 L
60 298 A Q H 3< S+ 0 0 156 72 27 S
61 299 A Q T 3< 0 0 149 72 19 K
62 300 A T < 0 0 146 5 0
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 239 A 0 0 0 0 0 0 0 12 0 6 72 0 0 0 0 0 0 0 1 9 67 0 0 0.940 31 0.60
2 240 A 0 0 0 0 0 0 0 3 0 3 0 3 0 31 20 0 37 3 0 0 70 0 0 1.460 48 0.40
3 241 A 20 3 54 0 0 0 0 0 0 0 0 23 0 0 0 0 0 0 0 0 70 0 0 1.092 36 0.50
4 242 A 3 87 6 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.547 18 0.87
5 243 A 0 7 1 20 0 0 0 6 13 0 6 43 0 0 3 0 0 1 0 0 70 0 0 1.687 56 0.19
6 244 A 44 0 1 0 0 0 0 0 50 0 0 4 0 0 0 0 0 0 0 0 70 0 0 0.903 30 0.45
7 245 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
8 246 A 0 3 0 0 0 0 0 0 0 0 0 1 0 0 23 64 4 4 0 0 70 0 0 1.054 35 0.59
9 247 A 0 0 0 0 0 0 0 20 0 0 0 0 0 0 0 13 0 64 0 3 70 0 0 0.971 32 0.46
10 248 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 99 0 0 0 0 72 0 0 0.073 2 0.98
11 249 A 0 0 0 0 3 0 0 0 0 57 1 22 0 0 6 0 4 0 1 6 72 0 0 1.327 44 0.30
12 250 A 3 1 0 0 1 0 3 0 60 0 26 0 0 0 0 0 0 0 6 0 72 0 0 1.138 37 0.38
13 251 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
14 252 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 99 0 0 72 0 0 0.073 2 0.97
15 253 A 0 71 3 0 6 0 0 0 0 0 0 21 0 0 0 0 0 0 0 0 72 0 0 0.831 27 0.44
16 254 A 0 0 0 0 0 0 0 3 0 0 68 0 8 0 21 0 0 0 0 0 72 0 0 0.895 29 0.45
17 255 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
18 256 A 0 0 0 0 0 0 0 0 0 0 86 0 3 0 0 0 0 0 0 11 72 0 0 0.472 15 0.80
19 257 A 0 0 0 0 0 0 0 0 0 0 67 15 0 0 0 0 0 0 18 0 72 0 0 0.866 28 0.44
20 258 A 0 0 0 6 0 0 0 1 0 0 0 0 0 0 7 1 69 15 0 0 72 0 0 1.005 33 0.54
21 259 A 0 0 0 0 0 0 0 0 3 0 0 3 0 0 0 0 0 13 1 81 72 0 0 0.693 23 0.80
22 260 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
23 261 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 71 0 0 72 0 0 0.604 20 0.68
24 262 A 0 67 0 18 0 0 0 0 1 0 1 0 0 0 3 3 0 6 1 0 72 0 0 1.117 37 0.53
25 263 A 90 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.359 11 0.93
26 264 A 24 4 13 0 4 0 0 0 8 0 1 43 0 0 0 0 0 0 3 0 72 0 0 1.594 53 0.30
27 265 A 0 0 0 0 0 0 0 3 0 0 8 4 0 0 6 71 3 4 1 0 72 0 0 1.135 37 0.51
28 266 A 6 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 3 76 0 0 72 0 0 0.753 25 0.44
29 267 A 0 0 0 0 0 0 0 19 0 1 0 0 0 3 0 0 0 0 1 75 72 0 0 0.753 25 0.68
30 268 A 15 1 0 0 0 0 0 0 8 56 0 14 0 0 0 0 0 6 0 0 72 0 0 1.315 43 0.28
31 269 A 0 0 0 0 0 0 0 1 10 0 3 0 0 0 10 36 10 28 0 3 72 0 0 1.662 55 0.33
32 270 A 6 0 0 0 0 0 0 6 88 0 0 1 0 0 0 0 0 0 0 0 72 0 0 0.497 16 0.78
33 271 A 0 78 3 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.613 20 0.90
34 272 A 3 0 0 6 0 0 0 0 83 0 1 0 0 0 0 1 1 4 0 0 72 0 0 0.723 24 0.64
35 273 A 39 3 0 1 3 0 0 0 11 0 8 6 0 0 4 0 11 8 0 6 72 0 0 1.982 66 0.10
36 274 A 19 0 0 0 0 0 0 0 72 0 1 1 0 0 0 0 0 0 0 6 72 0 0 0.833 27 0.45
37 275 A 0 94 0 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.215 7 0.82
38 276 A 3 0 0 0 0 0 0 25 0 0 24 0 1 10 3 1 0 0 33 0 72 0 0 1.598 53 0.29
39 277 A 3 3 0 0 0 89 0 0 0 0 0 0 6 0 0 0 0 0 0 0 72 0 0 0.464 15 0.55
40 278 A 0 0 0 0 0 0 0 3 0 3 6 0 0 0 0 1 0 3 4 81 72 0 0 0.825 27 0.68
41 279 A 8 10 33 3 0 0 0 0 3 3 4 1 0 0 6 17 0 4 6 3 72 0 0 2.142 71 0.14
42 280 A 0 0 0 0 0 0 0 1 3 0 0 13 0 0 7 40 22 14 0 0 72 0 0 1.579 52 0.30
43 281 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 24 71 0 6 0 0 72 0 0 0.746 24 0.68
44 282 A 1 0 1 0 0 0 0 0 29 0 0 68 0 0 0 0 0 0 0 0 72 0 0 0.740 24 0.60
45 283 A 1 3 1 0 0 0 0 4 1 0 17 0 0 0 0 10 3 57 0 3 72 0 0 1.455 48 0.31
46 284 A 0 0 0 0 0 0 0 0 47 0 1 39 0 0 0 0 0 3 8 1 72 0 0 1.147 38 0.44
47 285 A 58 33 1 0 0 0 0 0 3 0 0 4 0 0 0 0 0 0 0 0 72 0 0 0.972 32 0.59
48 286 A 4 17 0 0 0 0 0 0 0 0 0 0 0 3 1 7 68 0 0 0 72 0 0 1.037 34 0.33
49 287 A 0 0 0 0 0 0 6 1 3 0 0 0 0 1 7 0 60 22 0 0 72 0 0 1.206 40 0.46
50 288 A 0 0 0 0 0 0 0 0 89 0 1 1 0 0 0 0 0 6 3 0 72 0 0 0.484 16 0.76
51 289 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
52 290 A 3 0 0 0 0 0 0 1 6 0 0 1 0 4 3 8 1 49 10 14 72 0 0 1.729 57 0.46
53 291 A 0 0 0 0 0 0 0 0 15 0 0 1 0 0 17 6 50 7 3 1 72 0 0 1.496 49 0.33
54 292 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 96 0 0 72 0 0 0.173 5 0.96
55 293 A 0 99 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.073 2 0.99
56 294 A 0 0 0 0 0 0 0 4 24 0 39 19 0 0 1 6 0 6 1 0 72 0 0 1.599 53 0.34
57 295 A 0 47 0 0 0 0 0 8 1 0 0 1 0 0 22 19 0 0 0 0 72 0 0 1.333 44 0.09
58 296 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 72 0 0 0.000 0 1.00
59 297 A 0 96 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 1 72 0 0 0.200 6 0.88
60 298 A 0 0 0 0 0 0 0 0 0 0 6 0 0 0 4 0 88 3 0 0 72 0 0 0.509 17 0.73
61 299 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 90 0 0 0 72 0 0 0.377 12 0.80
62 300 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 5 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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