Complet list of 1kmd hssp file
Complete list of 1kmd.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1KMD
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-03
HEADER ENDOCYTOSIS/EXOCYTOSIS 14-DEC-01 1KMD
COMPND MOL_ID: 1; MOLECULE: VACUOLAR MORPHOGENESIS PROTEIN VAM7; CHAIN: A; FR
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; ORGANISM_COM
AUTHOR J.LU,J.GARCIA,I.DULUBOVA,T.C.SUDHOF,J.RIZO
DBREF 1KMD A 8 124 UNP P32912 VAM7_YEAST 8 124
SEQLENGTH 117
NCHAIN 1 chain(s) in 1KMD data set
NALIGN 40
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : N1P2P1_YEASC 1.00 1.00 1 117 8 124 117 0 0 316 N1P2P1 Vam7p OS=Saccharomyces cerevisiae (strain CEN.PK113-7D) GN=CENPK1137D_3222 PE=4 SV=1
2 : VAM7_YEAST 1.00 1.00 1 117 8 124 117 0 0 316 P32912 Vacuolar morphogenesis protein 7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM7 PE=1 SV=1
3 : A6ZTX7_YEAS7 0.99 0.99 1 117 8 124 117 0 0 316 A6ZTX7 Vacuolar morphogenesis protein OS=Saccharomyces cerevisiae (strain YJM789) GN=VAM7 PE=4 SV=1
4 : B3LHQ8_YEAS1 0.99 0.99 1 117 8 124 117 0 0 316 B3LHQ8 Vacuolar morphogenesis protein VAM7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SCRG_01199 PE=4 SV=1
5 : B5VIC2_YEAS6 0.99 0.99 1 117 8 124 117 0 0 316 B5VIC2 YGL212Wp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_70440 PE=4 SV=1
6 : C7GWY5_YEAS2 0.99 0.99 1 117 8 124 117 0 0 316 C7GWY5 Vam7p OS=Saccharomyces cerevisiae (strain JAY291) GN=VAM7 PE=4 SV=1
7 : E7KCA4_YEASA 0.99 0.99 1 117 8 124 117 0 0 229 E7KCA4 Vam7p OS=Saccharomyces cerevisiae (strain AWRI796) GN=AWRI796_1605 PE=4 SV=1
8 : E7LU71_YEASV 0.99 0.99 1 117 8 124 117 0 0 209 E7LU71 Vam7p OS=Saccharomyces cerevisiae (strain VIN 13) GN=VIN13_1586 PE=4 SV=1
9 : E7NHF1_YEASO 0.99 0.99 1 117 8 124 117 0 0 316 E7NHF1 Vam7p OS=Saccharomyces cerevisiae (strain FostersO) GN=FOSTERSO_1560 PE=4 SV=1
10 : E7Q3M1_YEASB 0.99 0.99 1 117 8 124 117 0 0 316 E7Q3M1 Vam7p OS=Saccharomyces cerevisiae (strain FostersB) GN=FOSTERSB_1579 PE=4 SV=1
11 : E7QEG8_YEASZ 0.99 0.99 2 117 1 116 116 0 0 308 E7QEG8 Vam7p OS=Saccharomyces cerevisiae (strain Zymaflore VL3) GN=VL3_1592 PE=4 SV=1
12 : G2WDP6_YEASK 0.99 0.99 1 117 8 124 117 0 0 316 G2WDP6 K7_Vam7p OS=Saccharomyces cerevisiae (strain Kyokai no. 7 / NBRC 101557) GN=K7_VAM7 PE=4 SV=1
13 : H0GG12_9SACH 0.99 0.99 1 117 8 124 117 0 0 316 H0GG12 Vam7p OS=Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 GN=VIN7_1622 PE=4 SV=1
14 : W7PUV1_YEASX 0.99 0.99 1 117 8 124 117 0 0 316 W7PUV1 Vam7p OS=Saccharomyces cerevisiae R008 GN=Vam7 PE=4 SV=1
15 : W7QYQ1_YEASX 0.99 0.99 1 117 8 124 117 0 0 316 W7QYQ1 Vam7p OS=Saccharomyces cerevisiae P283 GN=Vam7 PE=4 SV=1
16 : C8Z843_YEAS8 0.98 0.99 1 117 8 124 117 0 0 316 C8Z843 Vam7p OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=EC1118_1G1_0606g PE=4 SV=1
17 : E7KN77_YEASL 0.98 0.98 1 117 8 124 117 0 0 209 E7KN77 Vam7p OS=Saccharomyces cerevisiae (strain Lalvin QA23) GN=QA23_1594 PE=4 SV=1
18 : H0GUI9_9SACH 0.79 0.94 2 117 1 116 116 0 0 308 H0GUI9 Vam7p OS=Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 GN=VIN7_6984 PE=4 SV=1
19 : J8TYB8_SACK1 0.79 0.95 2 117 1 116 116 0 0 308 J8TYB8 VAM7-like protein OS=Saccharomyces kudriavzevii (strain ATCC MYA-4449 / AS 2.2408 / CBS 8840 / NBRC 1802 / NCYC 2889) GN=YGL212W PE=4 SV=1
20 : D5GBL5_TUBMM 0.34 0.55 22 114 24 114 97 4 10 368 D5GBL5 Whole genome shotgun sequence assembly, scaffold_2, strain Mel28 OS=Tuber melanosporum (strain Mel28) GN=GSTUM_00005690001 PE=4 SV=1
21 : G0S411_CHATD 0.32 0.53 19 116 27 122 104 6 14 371 G0S411 Putative phosphoinositide binding protein OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) GN=CTHT_0022160 PE=4 SV=1
22 : L7X1S1_9NEOP 0.32 0.51 12 98 53 138 92 4 11 165 L7X1S1 Sorting nexin 12-like protein OS=Heliconius erato PE=4 SV=1
23 : U7PNT7_SPOS1 0.32 0.51 19 117 24 120 105 6 14 421 U7PNT7 Uncharacterized protein OS=Sporothrix schenckii (strain ATCC 58251 / de Perez 2211183) GN=HMPREF1624_06640 PE=4 SV=1
24 : F7VY85_SORMK 0.31 0.51 21 114 31 122 100 6 14 603 F7VY85 WGS project CABT00000000 data, contig 2.13 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) GN=SMAC_06654 PE=4 SV=1
25 : G0RJ30_HYPJQ 0.31 0.53 19 117 23 119 105 6 14 364 G0RJ30 V-SNARE protein OS=Hypocrea jecorina (strain QM6a) GN=TRIREDRAFT_61465 PE=4 SV=1
26 : G1XAP9_ARTOA 0.31 0.47 22 117 23 116 104 6 18 364 G1XAP9 Uncharacterized protein OS=Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) GN=AOL_s00076g707 PE=4 SV=1
27 : M1W2P9_CLAP2 0.31 0.54 19 117 23 119 105 6 14 376 M1W2P9 Related to syntaxin OS=Claviceps purpurea (strain 20.1) GN=CPUR_01304 PE=4 SV=1
28 : C3PPF4_9NEOP 0.30 0.51 12 112 52 148 105 4 12 164 C3PPF4 Similar to Sorting nexin OS=Heliconius melpomene GN=HM01020 PE=4 SV=1
29 : F8MMR9_NEUT8 0.30 0.51 21 114 30 121 100 6 14 562 F8MMR9 Putative uncharacterized protein OS=Neurospora tetrasperma (strain FGSC 2508 / ATCC MYA-4615 / P0657) GN=NEUTE1DRAFT_146434 PE=4 SV=1
30 : G2RB67_THITE 0.30 0.48 21 114 26 117 100 6 14 377 G2RB67 Putative uncharacterized protein OS=Thielavia terrestris (strain ATCC 38088 / NRRL 8126) GN=THITE_2119033 PE=4 SV=1
31 : G3B7W5_CANTC 0.30 0.45 2 96 1 94 102 4 15 337 G3B7W5 Putative uncharacterized protein OS=Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) GN=CANTEDRAFT_135611 PE=4 SV=1
32 : G3JBS5_CORMM 0.30 0.56 19 117 23 119 105 6 14 362 G3JBS5 SNARE complex subunit (Vam7), putative OS=Cordyceps militaris (strain CM01) GN=CCM_02769 PE=4 SV=1
33 : G4MLE6_MAGO7 0.30 0.51 22 117 27 120 102 6 14 375 G4MLE6 V-SNARE OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_05428 PE=4 SV=1
34 : G4UQ88_NEUT9 0.30 0.51 21 114 30 121 100 6 14 562 G4UQ88 Uncharacterized protein OS=Neurospora tetrasperma (strain FGSC 2509 / P0656) GN=NEUTE2DRAFT_89299 PE=4 SV=1
35 : G9NCE5_HYPVG 0.30 0.53 19 117 23 119 105 6 14 362 G9NCE5 Uncharacterized protein OS=Hypocrea virens (strain Gv29-8 / FGSC 10586) GN=TRIVIDRAFT_87333 PE=4 SV=1
36 : L7JM20_MAGOP 0.30 0.51 22 117 27 120 102 6 14 375 L7JM20 V-SNARE OS=Magnaporthe oryzae (strain P131) GN=OOW_P131scaffold00191g3 PE=4 SV=1
37 : N4UPZ8_COLOR 0.30 0.48 19 116 22 117 104 6 14 366 N4UPZ8 Snare complex subunit OS=Colletotrichum orbiculare (strain 104-T / ATCC 96160 / CBS 514.97 / LARS 414 / MAFF 240422) GN=Cob_12762 PE=4 SV=1
38 : Q7RZW9_NEUCR 0.30 0.51 21 114 30 121 100 6 14 562 Q7RZW9 V-SNARE OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU00242 PE=4 SV=1
39 : S3CC28_OPHP1 0.30 0.49 21 117 26 120 103 6 14 403 S3CC28 Snare complex subunit OS=Ophiostoma piceae (strain UAMH 11346) GN=F503_05557 PE=4 SV=1
40 : U4LQE6_PYROM 0.30 0.47 19 116 19 114 105 5 16 344 U4LQE6 Similar to Vacuolar morphogenesis protein 7 homolog acc. no. O74509 OS=Pyronema omphalodes (strain CBS 100304) GN=PCON_03593 PE=4 SV=1
## ALIGNMENTS 1 - 40
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 8 A K 0 0 235 17 0 KKKKKKKKKK KKKKKK
2 9 A M - 0 0 144 21 0 MMMMMMMMMMMMMMMMMMM M
3 10 A S - 0 0 26 21 0 SSSSSSSSSSSSSSSSSSS S
4 11 A E - 0 0 156 21 61 EEEEEEEEEEEEEEEEEDD K
5 12 A K - 0 0 157 21 70 KKKKKKKKKKKKKKKKKKK V
6 13 A L - 0 0 48 21 28 LLLLLLLLLLLLLLLLLLL I
7 14 A R + 0 0 180 21 66 RRRRRRRRRRRRRRRRRRR T
8 15 A I + 0 0 7 21 0 IIIIIIIIIIIIIIIIIII I
9 16 A K E -A 25 0A 157 21 77 KKKKKKKKKKKKKKKKKHH N
10 17 A V E +A 24 0A 6 21 66 VVVVVVVVVVVVVVVVVVV S
11 18 A D E + 0 0A 126 21 53 DDDDDDDDDDDDDDDDDDD T
12 19 A D E +A 23 0A 55 23 52 DDDDDDDDDDDDDDDDDGG E E S
13 20 A V E -A 22 0A 46 23 3 VVVVVVVVVVVVVVVVVIV V V V
14 21 A K E -A 21 0A 74 23 65 KKKKKKKKKKKKKKKKKDD R R S
15 22 A I E -A 20 0A 81 23 67 IIIIIIIIIIIIIIIIIII M M N
16 23 A N - 0 0 45 23 63 NNNNNNNNNNNNNNNNNKK R R N
17 24 A P S S+ 0 0 104 23 64 PPPPPPPPPPPPPPPPPPP T T T
18 25 A K S S- 0 0 161 23 65 KKKKKKKKKKKKKKKKKKK N N T
19 26 A Y - 0 0 106 31 17 YYYYYYYYYYYYYYYYYYY YLY Y YL YY Y Y Y
20 27 A V E -A 15 0A 4 31 81 VVVVVVVVVVVVVVVVVVV TPT T TP YT T T T
21 28 A L E -A 14 0A 32 37 18 LLLLLLLLLLLLLLLLLLL LVLLL LVLLRL LL LLLL
22 29 A Y E -AB 13 33A 5 41 7 YYYYYYYYYYYYYYYYYYYYYFYYYYYFYYIYYYYYYYYY
23 30 A G E -AB 12 32A 0 41 71 GGGGGGGGGGGGGGGGGRRhnKnnnnnKnnDnnnnnnnnh
24 31 A V E -AB 10 31A 7 41 36 VVVVVVVVVVVVVVVVVIIllVlllilVllIlllllllll
25 32 A S E +A 9 0A 49 40 74 SSSSSSSSSSSSSSSSSSSRA.RRRRRKRRKRRRRRRRRR
26 33 A T - 0 0 15 40 84 TTTTTTTTTTTTTTTTTTTLL.LLLLLELMILLLLLLLLT
27 34 A P S S+ 0 0 54 41 16 PPPPPPPPPPPPPPPPPPPPPKPPPPPSPPPPPPPPPPPS
28 35 A N S S- 0 0 114 41 99 NNNNNNNNNNNNNNNNNTTLMELLLLLSLLLLLLLLLLLV
29 36 A K - 0 0 138 41 46 KKKKKKKKKKKKKKKKKKKrrSrrrrrVrrrrrrrrrrrr
30 37 A R - 0 0 125 41 97 RRRRRRRRRRRRRRRRRLLtvSvvisvRvvtvvvivvvvs
31 38 A L E -B 24 0A 23 40 38 LLLLLLLLLLLLLLLLLFFVIVFVVLV.VVVVVVVVVVVL
32 39 A Y E +B 23 0A 96 40 117 YYYYYYYYYYYYYYYYYYYKQRQQQKQ.QQSQQQQQQQQP
33 40 A K E -B 22 0A 34 41 9 KKKKKKKKKKKKKKKKKKKKKRKKKKKRKKRKKKKKKKKK
34 41 A R >> - 0 0 73 41 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
35 42 A Y H >> S+ 0 0 33 41 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
36 43 A S H 3> S+ 0 0 71 41 4 SSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSSSSSSS
37 44 A E H <> S+ 0 0 59 41 18 EEEEEEEEEEEEEEEEEEEDEDEDEDEDDEEDEDEEDDDD
38 45 A F H > S+ 0 0 133 41 93 RRRRRRRRRRRRRRRRRQQRQENAAATEAATTAAAATAAA
45 52 A L H 3X>S+ 0 0 0 41 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
46 53 A E H 3X5S+ 0 0 68 41 81 EEEEEEEEEEEEEEEEEEETTETTVIVETASLVTVVTTTT
47 54 A R H <<5S+ 0 0 214 41 81 RRRRRRRRRRRRRRRRRKKDARSSASERSSQQSSSSSSNT
48 55 A D H <5S+ 0 0 56 41 83 DDDDDDDDDDDDDDDDDQQTLDLLQSQDLQSQQLQQLLLA
49 56 A V H <5S- 0 0 32 40 31 VVVVVVVVVVVVVVVVVIIVV.VVVEVSVALVVVVVVVVC
50 57 A G << + 0 0 65 40 16 GGGGGGGGGGGGGGGGGGGGG.GGGGGKGGgGGGGGGGGH
51 58 A S S S- 0 0 36 24 61 SSSSSSSSSSSSSSSSSSSS.......I..k........A
52 59 A T - 0 0 123 24 82 TTTTTTTTTTTTTTTTTPSV.......V..D........A
53 60 A I - 0 0 19 26 65 IIIIIIIIIIIIIIIIIIIP.S...I.V..F........P
54 61 A P + 0 0 92 26 15 PPPPPPPPPPPPPPPPPPPP.K...P.P..P........P
55 62 A Y - 0 0 29 25 84 YYYYYYYYYYYYYYYYYYYK.I...P....Y........L
56 63 A D + 0 0 164 25 83 DDDDDDDDDDDDDDDDDDDP.V...P....K........S
57 64 A F - 0 0 28 25 58 FFFFFFFFFFFFFFFFFFFL.V...I....L........P
58 65 A P - 0 0 84 41 53 PPPPPPPPPPPPPPPPPPPPTPESAPSPSAPSASAAASEP
59 66 A E - 0 0 83 41 80 EEEEEEEEEEEEEEEEEEEPPPAPPLPLPPAAAPPAPPAP
60 67 A K - 0 0 129 41 71 KKKKKKKKKKKKKKKKKKKKPLPPPPPPPPKPPPPPPPPK
61 68 A P - 0 0 119 41 20 PPPPPPPPPPPPPPPPPPPSPPPPPPPGPPSPPPPPPPPH
62 69 A G + 0 0 66 41 82 GGGGGGGGGGGGGGGGGSSYagselKeKeeSqaelakesY
63 70 A V S S- 0 0 134 37 49 VVVVVVVVVVVVVVVVVVV.lalll.lAll.llllllll.
64 71 A L S S+ 0 0 130 37 94 LLLLLLLLLLLLLLLLLLL.PLPPP.PLPP.PPPPPPPP.
65 72 A D + 0 0 61 37 70 DDDDDDDDDDDDDDDDDDD.AKGAG.GKAA.QTAGTGAS.
66 73 A R S > S+ 0 0 205 37 35 RRRRRRRRRRRRRRRRRKK.KRKKK.KRKK.KKKKKKKK.
67 74 A R T 3 S+ 0 0 233 37 103 RRMMMMMMMMMMMMMMMMM.SQSNH.HQNS.HSNHSSNT.
68 75 A W T 3 S+ 0 0 213 38 11 WWWWWWWWWWWWWWWWWWWFWLWWW.WLWW.WWWWWWWW.
69 76 A Q < - 0 0 151 38 116 QQQQQQQQQQQQQQQQQQKSFPFFL.LPFL.LFFLFFFF.
70 77 A R - 0 0 154 39 43 RRRRRRRRRRRRRRRRRRRRRFRKRSKFKR.KRKRRKKR.
71 78 A R > - 0 0 172 41 84 RRRRRRRRRRRRRRRRRRRTSRSSSYSRSSISSSSSSSSL
72 79 A Y T 3 S+ 0 0 73 41 96 YYYYYYYYYYYYYYYYYYYVTGTTTLTGTTFTTTTTTTTF
73 80 A D T 3 S+ 0 0 60 41 89 DDDDDDDDDDDDDDDDDDDGVDIVIKVDVVTVVVIVVVLS
74 81 A D X> - 0 0 56 41 62 DDDDDDDDDDDDDDDDDDDNNDANNSRDNSKTNNNNSNRT
75 82 A P H 3> S+ 0 0 93 41 68 PPPPPPPPPPPPPPPPPPPPsgssstsgssnssssssssl
76 83 A E H 3> S+ 0 0 149 41 24 EEEEEEEEEEEEEEEEEEEAeeeeeedeeasdeeeeeeds
77 84 A M H <> S+ 0 0 38 41 30 MMMMMMMMMMMMMMMMMMMMLFLLLFLFLLTLLLLLLLLR
78 85 A I H X S+ 0 0 13 41 67 IIIIIIIIIIIIIIIIIIITTITTTATITTIATTTTTTTT
79 86 A D H X S+ 0 0 97 41 45 DDDDDDDDDDDDDDDDDDDEEEEEREHEEESREEREQEEE
80 87 A E H < S+ 0 0 111 41 41 EEEEEEEEEEEEEEEEEEEEQDDKEEEDKQEEKKEKQKSE
81 88 A R H < S+ 0 0 39 41 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
82 89 A R H >< S+ 0 0 62 41 18 RRRRRRRRRRRRRRRRRRRRRRRRQRQRRRKQRRQRRRRR
83 90 A I T 3< S+ 0 0 84 41 71 IIIIIIIIIIIIIIIIIVVDQKVVLRIKVAQVVVLVQVEA
84 91 A G T 3> S+ 0 0 37 41 20 GGGGGGGGGGGGGGGGGGGGGGGGGGGGAAGGQAGQGAGG
85 92 A L H <> S+ 0 0 5 41 1 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFL
86 93 A E H >> S+ 0 0 30 41 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
87 94 A R H 3> S+ 0 0 172 41 66 RRRRRRRRRRRRRRRRRRRKKVARKERVRRDRERKEARAA
88 95 A F H 3X S+ 0 0 9 41 4 FFFFFFFFFFFFFFFFFFFYYFYYYYYFYYFYYYYYYYYY
89 96 A L H > + 0 0 28 39 74 SSSSSSSSSSSSSSSSSSSPR RRRSRQRR RRRRRRRRS
100 107 A R H 3> S+ 0 0 96 38 0 RRRRRRRRRRRRRRRRRRRRR RRRRR.RR RRRRRRRRR
101 108 A W H 34 S+ 0 0 29 38 0 WWWWWWWWWWWWWWWWWWWWW WWWWW.WW WWWWWWWWW
102 109 A R H <4 S+ 0 0 84 38 0 RRRRRRRRRRRRRRRRRRRRR RRRRR.RR RRRRRRRRR
103 110 A D H < S+ 0 0 119 39 6 DDDDDDDDDDDDDDDDDDDDD DDDEDNDD DDDDDDDDD
104 111 A T S X S- 0 0 11 39 22 TTTTTTTTTTTTTTTTTTTST TTTSTETT TTTTTTTTS
105 112 A K H > S+ 0 0 151 39 80 KKKKKKKKKKKKKKKKKKKPA SPSPSRPP PPPSPSPTA
106 113 A I H > S+ 0 0 34 38 67 IIIIIIIIIIIIIIIVXIIAV VVAPACVA AAVAAAVAV
107 114 A A H > S+ 0 0 3 39 119 AAAAAAAAAAAAAAAAAAAWW WWWWWLWW WWWWWWWWW
108 115 A Q H <>S+ 0 0 73 39 58 QQQQQQQQQQQQQQQQQQQRR RRRRRHRR RRRRRRRRR
109 116 A D H ><5S+ 0 0 100 39 79 DDDDDDDDDDDDDDDDDNNTA AATQTMAA AAATASAAS
110 117 A F H 3<5S+ 0 0 5 39 0 FFFFFFFFFFFFFFFFFFFFF FFFFFFFF FFFFFFFFF
111 118 A L T 3<5S- 0 0 13 39 0 LLLLLLLLLLLLLLLLLLLLL LLLLLLLL LLLLLLLLL
112 119 A Q T < 5 + 0 0 149 39 60 QQQQQQQQQQQQQQQQQQQNN NNNNNQNN NNNNNNNNS
113 120 A L < + 0 0 57 38 0 LLLLLLLLLLLLLLLLLLLLL LLLLL LL LLLLLLLLL
114 121 A S - 0 0 77 38 58 SSSSSSSSSSSSSSSSSSSPP PPPPP PP PPPPPPPPP
115 122 A K - 0 0 189 32 80 KKKKKKKKKKKKKKKKKKK A S SSS NA SAS SA
116 123 A P 0 0 117 32 69 PPPPPPPPPPPPPPPPPAA A A SSS SG SGT TS
117 124 A N 0 0 223 29 70 NNNNNNNNNNNNNNNNNKK N STS SS SS S
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 17 0 0 0.000 0 1.00
2 9 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0.000 0 1.00
3 10 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 21 0 0 0.000 0 1.00
4 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 86 0 10 21 0 0 0.501 16 0.39
5 12 A 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 95 0 0 0 0 21 0 0 0.191 6 0.30
6 13 A 0 95 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0.191 6 0.71
7 14 A 0 0 0 0 0 0 0 0 0 0 0 5 0 0 95 0 0 0 0 0 21 0 0 0.191 6 0.34
8 15 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 21 0 0 0.000 0 1.00
9 16 A 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 86 0 0 5 0 21 0 0 0.501 16 0.23
10 17 A 95 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 21 0 0 0.191 6 0.34
11 18 A 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 95 21 0 0 0.191 6 0.46
12 19 A 0 0 0 0 0 0 0 9 0 0 4 0 0 0 0 0 0 9 0 78 23 0 0 0.753 25 0.47
13 20 A 96 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 0 0 0.179 5 0.97
14 21 A 0 0 0 0 0 0 0 0 0 0 4 0 0 0 9 78 0 0 0 9 23 0 0 0.753 25 0.34
15 22 A 0 0 87 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 23 0 0 0.470 15 0.32
16 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 9 0 0 83 0 23 0 0 0.583 19 0.37
17 24 A 0 0 0 0 0 0 0 0 0 87 0 13 0 0 0 0 0 0 0 0 23 0 0 0.387 12 0.36
18 25 A 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 87 0 0 9 0 23 0 0 0.470 15 0.35
19 26 A 0 6 0 0 0 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 31 0 0 0.239 7 0.82
20 27 A 65 0 0 0 0 0 3 0 0 6 0 26 0 0 0 0 0 0 0 0 31 0 0 0.920 30 0.18
21 28 A 5 92 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 37 0 0 0.333 11 0.81
22 29 A 0 0 2 0 5 0 93 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.308 10 0.92
23 30 A 0 0 0 0 0 0 0 44 0 0 0 0 0 5 5 5 0 0 39 2 41 0 18 1.261 42 0.28
24 31 A 49 41 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 1 0 0.942 31 0.64
25 32 A 0 0 0 0 0 0 0 0 3 0 50 0 0 0 43 5 0 0 0 0 40 0 0 0.952 31 0.25
26 33 A 0 40 3 3 0 0 0 0 0 0 0 52 0 0 0 0 0 3 0 0 40 0 0 0.981 32 0.16
27 34 A 0 0 0 0 0 0 0 0 0 93 5 0 0 0 0 2 0 0 0 0 41 0 0 0.308 10 0.83
28 35 A 2 41 0 2 0 0 0 0 0 0 2 5 0 0 0 0 0 2 44 0 41 0 0 1.236 41 0.00
29 36 A 2 0 0 0 0 0 0 0 0 0 2 0 0 0 46 49 0 0 0 0 41 0 19 0.888 29 0.54
30 37 A 32 5 5 0 0 0 0 0 0 0 7 5 0 0 46 0 0 0 0 0 41 1 0 1.354 45 0.03
31 38 A 40 50 3 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 1.000 33 0.62
32 39 A 0 0 0 0 0 0 50 0 0 3 3 0 0 0 3 5 38 0 0 0 40 0 0 1.141 38 -0.18
33 40 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 93 0 0 0 0 41 0 0 0.262 8 0.90
34 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 41 0 0 0.000 0 1.00
35 42 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
36 43 A 0 0 0 0 0 0 0 0 0 0 98 0 0 0 0 0 0 0 2 0 41 0 0 0.115 3 0.95
37 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 0 29 41 0 0 0.605 20 0.82
38 45 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
39 46 A 2 12 0 0 0 49 0 2 12 0 0 0 0 0 0 0 0 10 0 12 41 0 0 1.528 51 -0.23
40 47 A 0 0 0 0 0 5 0 0 22 0 0 10 0 0 5 46 5 5 0 2 41 0 0 1.596 53 0.12
41 48 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
42 49 A 0 2 0 0 0 0 0 0 0 0 0 0 0 41 5 49 0 0 0 2 41 0 0 1.044 34 0.24
43 50 A 2 0 0 0 0 0 0 0 0 0 10 61 0 0 2 5 12 5 2 0 41 0 0 1.352 45 0.29
44 51 A 0 0 0 0 0 0 0 0 29 0 0 10 0 0 46 0 7 5 2 0 41 0 0 1.372 45 0.07
45 52 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.000 0 1.00
46 53 A 12 2 2 0 0 0 0 0 2 0 2 24 0 0 0 0 0 54 0 0 41 0 0 1.297 43 0.18
47 54 A 0 0 0 0 0 0 0 0 5 0 27 2 0 0 49 5 5 2 2 2 41 0 0 1.507 50 0.18
48 55 A 0 20 0 0 0 0 0 0 2 0 5 2 0 0 0 0 22 0 0 49 41 1 0 1.330 44 0.16
49 56 A 82 3 5 0 0 0 0 0 3 0 3 0 3 0 0 0 0 3 0 0 40 0 0 0.770 25 0.69
50 57 A 0 0 0 0 0 0 0 95 0 0 0 0 0 3 0 3 0 0 0 0 40 16 1 0.233 7 0.84
51 58 A 0 0 4 0 0 0 0 0 4 0 88 0 0 0 0 4 0 0 0 0 24 0 0 0.514 17 0.39
52 59 A 8 0 0 0 0 0 0 0 4 4 4 75 0 0 0 0 0 0 0 4 24 0 0 0.953 31 0.18
53 60 A 4 0 81 0 4 0 0 0 0 8 4 0 0 0 0 0 0 0 0 0 26 0 0 0.746 24 0.35
54 61 A 0 0 0 0 0 0 0 0 0 96 0 0 0 0 0 4 0 0 0 0 26 1 0 0.163 5 0.84
55 62 A 0 4 4 0 0 0 84 0 0 4 0 0 0 0 0 4 0 0 0 0 25 0 0 0.661 22 0.16
56 63 A 4 0 0 0 0 0 0 0 0 8 4 0 0 0 0 4 0 0 0 80 25 0 0 0.767 25 0.17
57 64 A 4 8 4 0 80 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 25 0 0 0.767 25 0.41
58 65 A 0 0 0 0 0 0 0 0 15 63 15 2 0 0 0 0 0 5 0 0 41 0 0 1.089 36 0.46
59 66 A 0 5 0 0 0 0 0 0 15 32 0 0 0 0 0 0 0 49 0 0 41 0 0 1.143 38 0.19
60 67 A 0 2 0 0 0 0 0 0 0 41 0 0 0 0 0 56 0 0 0 0 41 0 0 0.780 26 0.28
61 68 A 0 0 0 0 0 0 0 2 0 90 5 0 0 2 0 0 0 0 0 0 41 0 0 0.421 14 0.79
62 69 A 0 5 0 0 0 0 5 46 7 0 12 0 0 0 0 7 2 15 0 0 41 4 16 1.662 55 0.17
63 70 A 54 41 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 37 0 0 0.856 28 0.50
64 71 A 0 59 0 0 0 0 0 0 0 41 0 0 0 0 0 0 0 0 0 0 37 0 0 0.675 22 0.06
65 72 A 0 0 0 0 0 0 0 14 16 0 3 5 0 0 0 5 3 0 0 54 37 0 0 1.409 47 0.30
66 73 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 54 46 0 0 0 0 37 0 0 0.690 23 0.65
67 74 A 0 0 0 46 0 0 0 0 0 0 16 3 0 11 8 0 5 0 11 0 37 0 0 1.592 53 -0.03
68 75 A 0 5 0 0 3 92 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.326 10 0.88
69 76 A 0 13 0 0 26 0 0 0 0 5 3 0 0 0 0 3 50 0 0 0 38 0 0 1.311 43 -0.17
70 77 A 0 0 0 0 5 0 0 0 0 0 3 0 0 0 74 18 0 0 0 0 39 0 0 0.775 25 0.56
71 78 A 0 2 2 0 0 0 2 0 0 0 37 2 0 0 54 0 0 0 0 0 41 0 0 1.064 35 0.16
72 79 A 2 2 0 0 5 0 49 5 0 0 0 37 0 0 0 0 0 0 0 0 41 0 0 1.194 39 0.03
73 80 A 27 2 7 0 0 0 0 2 0 0 2 2 0 0 0 2 0 0 0 54 41 0 0 1.331 44 0.10
74 81 A 0 0 0 0 0 0 0 0 2 0 7 5 0 0 5 2 0 0 24 54 41 0 0 1.345 44 0.37
75 82 A 0 2 0 0 0 0 0 5 0 51 37 2 0 0 0 0 0 0 2 0 41 0 20 1.130 37 0.31
76 83 A 0 0 0 0 0 0 0 0 5 0 5 0 0 0 0 0 0 83 0 7 41 0 0 0.641 21 0.75
77 84 A 0 37 0 51 7 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 41 0 0 1.083 36 0.70
78 85 A 0 0 56 0 0 0 0 0 5 0 0 39 0 0 0 0 0 0 0 0 41 0 0 0.839 28 0.33
79 86 A 0 0 0 0 0 0 0 0 0 0 2 0 0 2 7 0 2 37 0 49 41 0 0 1.181 39 0.54
80 87 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 15 7 68 0 7 41 0 0 1.015 33 0.58
81 88 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 41 0 0 0.000 0 1.00
82 89 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 88 2 10 0 0 0 41 0 0 0.432 14 0.81
83 90 A 24 5 46 0 0 0 0 0 5 0 0 0 0 0 2 5 7 2 0 2 41 0 0 1.606 53 0.29
84 91 A 0 0 0 0 0 0 0 85 10 0 0 0 0 0 0 0 5 0 0 0 41 0 0 0.509 17 0.80
85 92 A 0 98 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.115 3 0.99
86 93 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 41 0 0 0.000 0 1.00
87 94 A 5 0 0 0 0 0 0 0 10 0 0 0 0 0 66 10 0 7 0 2 41 0 0 1.158 38 0.34
88 95 A 0 0 0 0 56 0 44 0 0 0 0 0 0 0 0 0 0 0 0 0 41 1 0 0.686 22 0.95
89 96 A 0 93 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0.266 8 0.90
90 97 A 0 5 0 0 0 0 2 0 0 0 0 0 0 2 27 2 5 0 56 0 41 0 0 1.244 41 0.22
91 98 A 0 0 0 0 0 0 0 2 29 0 0 10 0 0 2 5 0 51 0 0 41 0 0 1.258 41 0.28
92 99 A 7 51 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 0 0.899 30 0.64
93 100 A 2 2 5 0 0 0 49 0 39 0 0 0 0 0 0 0 2 0 0 0 41 0 0 1.136 37 0.03
94 101 A 0 0 0 0 0 0 0 10 5 0 0 0 0 2 0 0 0 29 54 0 41 1 0 1.159 38 0.39
95 102 A 0 0 0 0 0 0 0 0 0 13 17 5 0 8 0 0 0 3 3 52 40 0 0 1.432 47 0.24
96 103 A 0 0 0 0 0 0 0 2 0 39 2 2 0 0 54 0 0 0 0 0 41 16 0 0.973 32 0.34
97 104 A 0 8 0 0 83 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 24 0 0 0.566 18 0.27
98 105 A 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 95 40 0 0 0.199 6 0.88
99 106 A 0 0 0 0 0 0 0 0 0 3 56 0 0 0 38 0 3 0 0 0 39 1 0 0.878 29 0.25
100 107 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 38 0 0 0.000 0 1.00
101 108 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
102 109 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 38 0 0 0.000 0 1.00
103 110 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3 95 39 0 0 0.238 7 0.93
104 111 A 0 0 0 0 0 0 0 0 0 0 8 90 0 0 0 0 0 3 0 0 39 0 0 0.388 12 0.77
105 112 A 0 0 0 0 0 0 0 0 5 26 13 3 0 0 3 51 0 0 0 0 39 0 0 1.295 43 0.19
106 113 A 21 0 47 0 0 0 0 0 26 3 0 0 3 0 0 0 0 0 0 0 38 0 0 1.225 40 0.32
107 114 A 0 3 0 0 0 46 0 0 51 0 0 0 0 0 0 0 0 0 0 0 39 0 0 0.793 26 -0.20
108 115 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 46 0 51 0 0 0 39 0 0 0.793 26 0.41
109 116 A 0 0 0 3 0 0 0 0 28 0 5 10 0 0 0 0 3 0 5 46 39 0 0 1.440 48 0.21
110 117 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39 0 0 0.000 0 1.00
111 118 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39 0 0 0.000 0 1.00
112 119 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 54 0 44 0 39 0 0 0.789 26 0.39
113 120 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.000 0 1.00
114 121 A 0 0 0 0 0 0 0 0 0 47 53 0 0 0 0 0 0 0 0 0 38 0 0 0.692 23 0.41
115 122 A 0 0 0 0 0 0 0 0 13 0 22 0 0 0 0 63 0 0 3 0 32 0 0 0.994 33 0.19
116 123 A 0 0 0 0 0 0 0 6 13 56 19 6 0 0 0 0 0 0 0 0 32 0 0 1.244 41 0.30
117 124 A 0 0 0 0 0 0 0 0 0 0 24 3 0 0 0 7 0 0 66 0 29 0 0 0.921 30 0.30
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
20 3 26 2 hILl
20 9 34 2 rSIt
21 6 32 2 nITl
21 12 40 2 rTYv
21 38 68 1 aPl
21 51 82 1 sPe
22 46 98 1 gKa
22 59 112 4 gIFEEe
23 6 29 2 nITl
23 12 37 2 rSYv
23 38 65 1 sRl
23 51 79 1 sQe
24 4 34 2 nITl
24 10 42 2 rSFv
24 36 70 1 ePl
24 49 84 1 sPe
25 6 28 2 nISl
25 12 36 2 rSFi
25 38 64 1 lPl
25 51 78 1 sPe
26 3 25 2 nVSi
26 9 33 2 rSFs
26 46 72 4 tVSNNe
27 6 28 2 nITl
27 12 36 2 rSFv
27 38 64 1 ePl
27 51 78 1 sAd
28 60 111 4 gIFEEe
29 4 33 2 nITl
29 10 41 2 rSFv
29 36 69 1 ePl
29 49 83 1 sPe
30 4 29 2 nITl
30 10 37 2 rSFv
30 36 65 1 ePl
30 49 79 1 sPa
31 29 29 2 rSLt
31 50 52 3 gIDSk
31 67 72 2 nSAs
32 6 28 2 nITl
32 12 36 2 rSFv
32 38 64 1 qPl
32 51 78 1 sPd
33 3 29 2 nITl
33 9 37 2 rSFv
33 35 65 1 aPl
33 48 79 1 sAe
34 4 33 2 nITl
34 10 41 2 rSFv
34 36 69 1 ePl
34 49 83 1 sPe
35 6 28 2 nISl
35 12 36 2 rSFi
35 38 64 1 lPl
35 51 78 1 sPe
36 3 29 2 nITl
36 9 37 2 rSFv
36 35 65 1 aPl
36 48 79 1 sAe
37 6 27 2 nITl
37 12 35 2 rSFv
37 38 63 1 kPl
37 51 77 1 sPe
38 4 33 2 nITl
38 10 41 2 rSFv
38 36 69 1 ePl
38 49 83 1 sPe
39 4 29 2 nITl
39 10 37 2 rSFv
39 36 65 1 sPl
39 49 79 1 sPd
40 6 24 2 hILl
40 12 32 2 rSYs
40 50 72 3 lGSPs
//