Complet list of 1k18 hssp file
Complete list of 1k18.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1K18
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER TRANSFERASE 24-SEP-01 1K18
COMPND MOL_ID: 1; MOLECULE: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT; CHAIN: A;
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE SEQUENCE OCCURS NATURALL
AUTHOR F.EVANICS,L.MAURMANN,W.W.YANG,R.N.BOSE
DBREF 1K18 A 1 31 UNP P09884 DPOA_HUMAN 1347 1377
SEQLENGTH 31
NCHAIN 1 chain(s) in 1K18 data set
NALIGN 89
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A6NMQ1_HUMAN 1.00 1.00 1 31 1353 1383 31 0 0 1468 A6NMQ1 DNA polymerase OS=Homo sapiens GN=POLA1 PE=2 SV=1
2 : DPOLA_HUMAN 1.00 1.00 1 31 1347 1377 31 0 0 1462 P09884 DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2
3 : F7IFC7_CALJA 1.00 1.00 1 31 1353 1383 31 0 0 1468 F7IFC7 DNA polymerase OS=Callithrix jacchus GN=POLA1 PE=3 SV=1
4 : G1RGE5_NOMLE 1.00 1.00 1 31 1353 1383 31 0 0 1468 G1RGE5 DNA polymerase OS=Nomascus leucogenys GN=POLA1 PE=3 SV=1
5 : G3RJ26_GORGO 1.00 1.00 2 31 1354 1383 30 0 0 1424 G3RJ26 DNA polymerase OS=Gorilla gorilla gorilla GN=101147018 PE=3 SV=1
6 : H2PV58_PONAB 1.00 1.00 1 31 1347 1377 31 0 0 1462 H2PV58 DNA polymerase OS=Pongo abelii GN=POLA1 PE=3 SV=1
7 : H2QYF2_PANTR 1.00 1.00 1 31 1254 1284 31 0 0 1369 H2QYF2 DNA polymerase OS=Pan troglodytes GN=POLA1 PE=3 SV=1
8 : K7CDL9_PANTR 1.00 1.00 1 31 1353 1383 31 0 0 1468 K7CDL9 DNA polymerase OS=Pan troglodytes GN=POLA1 PE=2 SV=1
9 : K7CUU4_PANTR 1.00 1.00 1 31 1353 1383 31 0 0 1468 K7CUU4 DNA polymerase OS=Pan troglodytes GN=POLA1 PE=2 SV=1
10 : F7HF26_MACMU 0.97 0.97 1 31 1339 1369 31 0 0 1454 F7HF26 DNA polymerase (Fragment) OS=Macaca mulatta GN=POLA1 PE=3 SV=1
11 : G7NSQ0_MACMU 0.97 0.97 1 31 1353 1383 31 0 0 1468 G7NSQ0 DNA polymerase OS=Macaca mulatta GN=EGK_20335 PE=3 SV=1
12 : G7Q2E2_MACFA 0.97 0.97 1 31 1353 1383 31 0 0 1468 G7Q2E2 DNA polymerase OS=Macaca fascicularis GN=EGM_18627 PE=3 SV=1
13 : H9F6X4_MACMU 0.97 0.97 1 31 1323 1353 31 0 0 1438 H9F6X4 DNA polymerase (Fragment) OS=Macaca mulatta GN=POLA1 PE=2 SV=1
14 : H9ZA99_MACMU 0.97 0.97 1 31 1350 1380 31 0 0 1465 H9ZA99 DNA polymerase OS=Macaca mulatta GN=POLA1 PE=2 SV=1
15 : L9JGV4_TUPCH 0.94 0.97 1 31 1300 1330 31 0 0 1414 L9JGV4 DNA polymerase OS=Tupaia chinensis GN=TREES_T100019785 PE=3 SV=1
16 : G5AUJ3_HETGA 0.90 1.00 1 31 1303 1333 31 0 0 1342 G5AUJ3 DNA polymerase OS=Heterocephalus glaber GN=GW7_07156 PE=3 SV=1
17 : K7GRB5_PIG 0.90 0.90 1 31 4 34 31 0 0 119 K7GRB5 Uncharacterized protein (Fragment) OS=Sus scrofa GN=LOC100627036 PE=4 SV=1
18 : L5K0R8_PTEAL 0.90 0.90 1 31 1407 1437 31 0 0 1483 L5K0R8 DNA polymerase OS=Pteropus alecto GN=PAL_GLEAN10002249 PE=3 SV=1
19 : L8IUV3_9CETA 0.90 0.90 1 31 1340 1370 31 0 0 1455 L8IUV3 DNA polymerase (Fragment) OS=Bos mutus GN=M91_13193 PE=3 SV=1
20 : W5Q828_SHEEP 0.90 0.90 1 31 1353 1383 31 0 0 1468 W5Q828 Uncharacterized protein OS=Ovis aries GN=POLA1 PE=4 SV=1
21 : DPOLA_RAT 0.87 0.94 1 31 1354 1384 31 0 0 1451 O89042 DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus norvegicus GN=Pola1 PE=2 SV=1
22 : G1T8Z5_RABIT 0.87 0.90 1 31 1351 1381 31 0 0 1466 G1T8Z5 DNA polymerase OS=Oryctolagus cuniculus GN=POLA1 PE=3 SV=2
23 : G3SP81_LOXAF 0.87 0.90 1 31 1353 1383 31 0 0 1467 G3SP81 DNA polymerase OS=Loxodonta africana GN=POLA1 PE=3 SV=1
24 : L5LGM1_MYODS 0.87 0.87 1 31 1418 1448 31 0 0 1533 L5LGM1 DNA polymerase OS=Myotis davidii GN=MDA_GLEAN10006359 PE=3 SV=1
25 : S7P457_MYOBR 0.87 0.87 1 31 1440 1470 31 0 0 1555 S7P457 DNA polymerase OS=Myotis brandtii GN=D623_10010235 PE=3 SV=1
26 : D2HVJ4_AILME 0.84 0.90 1 31 1346 1376 31 0 0 1459 D2HVJ4 DNA polymerase (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_016394 PE=3 SV=1
27 : F1LRJ6_RAT 0.84 0.94 1 31 1339 1369 31 0 0 1453 F1LRJ6 DNA polymerase (Fragment) OS=Rattus norvegicus GN=Pola1 PE=3 SV=2
28 : F6Y1C9_CANFA 0.84 0.90 1 31 1353 1383 31 0 0 1467 F6Y1C9 DNA polymerase OS=Canis familiaris GN=POLA1 PE=3 SV=1
29 : G1M8F8_AILME 0.84 0.90 1 31 1353 1383 31 0 0 1466 G1M8F8 DNA polymerase OS=Ailuropoda melanoleuca GN=POLA1 PE=3 SV=1
30 : M3XLZ3_MUSPF 0.84 0.90 1 31 1353 1383 31 0 0 1467 M3XLZ3 DNA polymerase OS=Mustela putorius furo GN=POLA1 PE=3 SV=1
31 : U6CRT5_NEOVI 0.84 0.90 1 31 1353 1383 31 0 0 1467 U6CRT5 DNA polymerase OS=Neovison vison GN=A6NMQ1 PE=2 SV=1
32 : F7ADS9_MONDO 0.81 0.94 1 31 1377 1407 31 0 0 1499 F7ADS9 DNA polymerase OS=Monodelphis domestica GN=POLA1 PE=3 SV=2
33 : G3WJA6_SARHA 0.81 0.94 1 31 1375 1405 31 0 0 1497 G3WJA6 DNA polymerase OS=Sarcophilus harrisii GN=POLA1 PE=3 SV=1
34 : M3VXZ0_FELCA 0.81 0.90 1 31 1240 1270 31 0 0 1355 M3VXZ0 DNA polymerase OS=Felis catus GN=POLA1 PE=3 SV=1
35 : Q59J90_AMBME 0.81 0.94 1 31 1295 1325 31 0 0 1409 Q59J90 DNA polymerase (Fragment) OS=Ambystoma mexicanum PE=2 SV=1
36 : B9EHJ9_MOUSE 0.77 0.87 1 31 643 673 31 0 0 757 B9EHJ9 Pola1 protein OS=Mus musculus GN=Pola1 PE=2 SV=1
37 : DPOLA_MOUSE 0.77 0.87 1 31 1351 1381 31 0 0 1465 P33609 DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1 SV=2
38 : G1MTD8_MELGA 0.77 0.90 1 31 1338 1368 31 0 0 1462 G1MTD8 DNA polymerase (Fragment) OS=Meleagris gallopavo GN=POLA1 PE=3 SV=2
39 : R0M0Z7_ANAPL 0.77 0.94 1 31 1326 1356 31 0 0 1450 R0M0Z7 DNA polymerase (Fragment) OS=Anas platyrhynchos GN=Anapl_12658 PE=3 SV=1
40 : U3INC5_ANAPL 0.77 0.94 1 31 1337 1367 31 0 0 1461 U3INC5 DNA polymerase (Fragment) OS=Anas platyrhynchos GN=POLA1 PE=3 SV=1
41 : U3JNC8_FICAL 0.77 0.90 1 31 1369 1399 31 0 0 1436 U3JNC8 DNA polymerase OS=Ficedula albicollis GN=POLA1 PE=3 SV=1
42 : F1NR19_CHICK 0.74 0.90 1 31 1367 1397 31 0 0 1491 F1NR19 DNA polymerase OS=Gallus gallus GN=POLA1 PE=3 SV=2
43 : K7FRB0_PELSI 0.74 0.87 1 31 1296 1326 31 0 0 1351 K7FRB0 DNA polymerase OS=Pelodiscus sinensis GN=POLA1 PE=3 SV=1
44 : Q59J86_CHICK 0.74 0.90 1 31 1338 1368 31 0 0 1462 Q59J86 DNA polymerase (Fragment) OS=Gallus gallus PE=2 SV=1
45 : Q59J87_CAICR 0.74 0.87 1 31 1294 1324 31 0 0 1419 Q59J87 DNA polymerase (Fragment) OS=Caiman crocodilus PE=2 SV=1
46 : Q59J89_TRASC 0.74 0.87 1 31 1317 1347 31 0 0 1441 Q59J89 DNA polymerase (Fragment) OS=Trachemys scripta PE=2 SV=1
47 : V9K854_CALMI 0.74 0.87 1 31 1369 1399 31 0 0 1485 V9K854 DNA polymerase OS=Callorhynchus milii PE=2 SV=1
48 : V9KC86_CALMI 0.74 0.87 1 31 615 645 31 0 0 731 V9KC86 DNA polymerase OS=Callorhynchus milii PE=2 SV=1
49 : Q59J88_IGUIG 0.73 0.87 2 31 1320 1349 30 0 0 1441 Q59J88 DNA polymerase (Fragment) OS=Iguana iguana PE=2 SV=1
50 : B1WBE2_XENLA 0.71 0.84 1 31 1344 1374 31 0 0 1458 B1WBE2 DNA polymerase OS=Xenopus laevis GN=LOC398200 PE=2 SV=1
51 : B7ZRF3_XENLA 0.71 0.84 1 31 1344 1374 31 0 0 1458 B7ZRF3 DNA polymerase OS=Xenopus laevis GN=LOC398200 PE=2 SV=1
52 : DPOLA_XENLA 0.71 0.84 1 31 1344 1374 31 0 0 1458 Q9DE46 DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1 PE=1 SV=1
53 : Q2VPI3_XENLA 0.71 0.84 1 31 187 217 31 0 0 301 Q2VPI3 Uncharacterized protein (Fragment) OS=Xenopus laevis PE=2 SV=1
54 : Q4QQX0_XENLA 0.71 0.84 1 31 163 193 31 0 0 277 Q4QQX0 Uncharacterized protein (Fragment) OS=Xenopus laevis PE=2 SV=1
55 : W5M1E0_LEPOC 0.71 0.94 1 31 1372 1402 31 0 0 1486 W5M1E0 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
56 : F6Z608_XENTR 0.68 0.84 1 31 1349 1379 31 0 0 1463 F6Z608 DNA polymerase OS=Xenopus tropicalis GN=pola1 PE=3 SV=1
57 : G3NDJ8_GASAC 0.65 0.90 1 31 1331 1361 31 0 0 1444 G3NDJ8 DNA polymerase (Fragment) OS=Gasterosteus aculeatus PE=3 SV=1
58 : E2B276_CAMFO 0.64 0.79 2 29 1348 1375 28 0 0 1478 E2B276 DNA polymerase OS=Camponotus floridanus GN=EAG_02295 PE=3 SV=1
59 : E2BFZ1_HARSA 0.61 0.75 2 29 1349 1376 28 0 0 1482 E2BFZ1 DNA polymerase OS=Harpegnathos saltator GN=EAI_14608 PE=3 SV=1
60 : E6ZIJ7_DICLA 0.61 0.87 1 31 1293 1323 31 0 0 1425 E6ZIJ7 DNA polymerase OS=Dicentrarchus labrax GN=POLA1 PE=3 SV=1
61 : H2LTH2_ORYLA 0.61 0.87 1 31 1355 1385 31 0 0 1472 H2LTH2 DNA polymerase OS=Oryzias latipes GN=LOC101165771 PE=3 SV=1
62 : H2T551_TAKRU 0.61 0.87 1 31 1318 1348 31 0 0 1442 H2T551 DNA polymerase (Fragment) OS=Takifugu rubripes GN=LOC101069062 PE=3 SV=1
63 : H2T552_TAKRU 0.61 0.87 1 31 1304 1334 31 0 0 1429 H2T552 DNA polymerase (Fragment) OS=Takifugu rubripes GN=LOC101069062 PE=3 SV=1
64 : H2T553_TAKRU 0.61 0.87 1 31 1286 1316 31 0 0 1411 H2T553 DNA polymerase (Fragment) OS=Takifugu rubripes GN=LOC101069062 PE=3 SV=1
65 : H2T554_TAKRU 0.61 0.87 1 31 1355 1385 31 0 0 1472 H2T554 DNA polymerase OS=Takifugu rubripes GN=LOC101069062 PE=3 SV=1
66 : H2T555_TAKRU 0.61 0.87 1 31 1339 1369 31 0 0 1450 H2T555 DNA polymerase (Fragment) OS=Takifugu rubripes GN=LOC101069062 PE=3 SV=1
67 : H3CRV0_TETNG 0.61 0.87 1 31 1324 1354 31 0 0 1387 H3CRV0 DNA polymerase (Fragment) OS=Tetraodon nigroviridis PE=3 SV=1
68 : I3KAC7_ORENI 0.61 0.87 1 31 1370 1400 31 0 0 1482 I3KAC7 DNA polymerase OS=Oreochromis niloticus GN=LOC100710394 PE=3 SV=1
69 : I3KAC8_ORENI 0.61 0.87 1 31 1355 1385 31 0 0 1478 I3KAC8 DNA polymerase OS=Oreochromis niloticus GN=LOC100710394 PE=3 SV=1
70 : M4AXC6_XIPMA 0.61 0.87 1 31 1365 1395 31 0 0 1477 M4AXC6 DNA polymerase OS=Xiphophorus maculatus PE=3 SV=1
71 : E7FB68_DANRE 0.58 0.90 1 31 1354 1384 31 0 0 1468 E7FB68 DNA polymerase OS=Danio rerio GN=pola1 PE=3 SV=1
72 : E7FFK2_DANRE 0.58 0.90 1 31 1326 1356 31 0 0 1390 E7FFK2 DNA polymerase OS=Danio rerio GN=pola1 PE=3 SV=1
73 : E9QIM3_DANRE 0.58 0.90 1 31 1342 1372 31 0 0 1456 E9QIM3 DNA polymerase OS=Danio rerio GN=pola1 PE=3 SV=1
74 : Q6DRM6_DANRE 0.58 0.90 1 31 1325 1355 31 0 0 1389 Q6DRM6 DNA polymerase (Fragment) OS=Danio rerio GN=pola1 PE=2 SV=1
75 : W5KK76_ASTMX 0.58 0.87 1 31 1367 1397 31 0 0 1483 W5KK76 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
76 : E9IV41_SOLIN 0.57 0.70 2 31 1326 1355 30 0 0 1459 E9IV41 DNA polymerase (Fragment) OS=Solenopsis invicta GN=SINV_80520 PE=3 SV=1
77 : H2Y7K2_CIOSA 0.55 0.74 1 31 1319 1349 31 0 0 1383 H2Y7K2 DNA polymerase (Fragment) OS=Ciona savignyi GN=Csa.7288 PE=3 SV=1
78 : H2Y7K3_CIOSA 0.55 0.74 1 31 1272 1302 31 0 0 1382 H2Y7K3 DNA polymerase (Fragment) OS=Ciona savignyi GN=Csa.7288 PE=3 SV=1
79 : H2Y7K4_CIOSA 0.55 0.74 1 31 1287 1317 31 0 0 1402 H2Y7K4 DNA polymerase (Fragment) OS=Ciona savignyi GN=Csa.7288 PE=3 SV=1
80 : H2Y7K5_CIOSA 0.55 0.74 1 31 1316 1346 31 0 0 1425 H2Y7K5 DNA polymerase OS=Ciona savignyi GN=Csa.7288 PE=3 SV=1
81 : H2Y7K6_CIOSA 0.55 0.74 1 31 1303 1333 31 0 0 1413 H2Y7K6 DNA polymerase (Fragment) OS=Ciona savignyi GN=Csa.7288 PE=3 SV=1
82 : W5UKD0_ICTPU 0.55 0.84 1 31 1344 1374 31 0 0 1457 W5UKD0 DNA polymerase alpha catalytic subunit OS=Ictalurus punctatus GN=pola1 PE=2 SV=1
83 : F4W6C8_ACREC 0.54 0.75 2 29 1315 1342 28 0 0 1447 F4W6C8 DNA polymerase OS=Acromyrmex echinatior GN=G5I_01022 PE=3 SV=1
84 : W4WNN6_ATTCE 0.54 0.75 2 29 1323 1350 28 0 0 1455 W4WNN6 DNA polymerase OS=Atta cephalotes PE=3 SV=1
85 : E0VHS7_PEDHC 0.52 0.81 1 31 1333 1363 31 0 0 1474 E0VHS7 DNA polymerase OS=Pediculus humanus subsp. corporis GN=Phum_PHUM210770 PE=3 SV=1
86 : W4XA16_STRPU 0.52 0.74 1 31 1153 1183 31 0 0 1264 W4XA16 DNA polymerase (Fragment) OS=Strongylocentrotus purpuratus GN=Sp-Pola PE=3 SV=1
87 : W4Z5F4_STRPU 0.52 0.74 1 31 354 384 31 0 0 455 W4Z5F4 Uncharacterized protein OS=Strongylocentrotus purpuratus GN=Sp-Pola_1 PE=4 SV=1
88 : A7SAB6_NEMVE 0.50 0.70 2 31 1128 1157 30 0 0 1242 A7SAB6 DNA polymerase OS=Nematostella vectensis GN=v1g168297 PE=3 SV=1
89 : B7QFQ4_IXOSC 0.48 0.84 1 31 874 904 31 0 0 978 B7QFQ4 DNA polymerase OS=Ixodes scapularis GN=IscW_ISCW012960 PE=3 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A I 0 0 120 82 24 IIII IIIIIIIIIILIIIIIVIIIIMIIIIIIMIIIIIIIIIIIIVV VVVVVVVV VVVVVVVVMMV
2 2 A C + 0 0 16 90 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3 3 A E > - 0 0 163 90 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
4 4 A E T 3> S+ 0 0 167 90 26 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDDEEEEEEEEEEEDNNDDDDDDDDDDD
5 5 A P H 3> S+ 0 0 99 90 49 PPPPPPPPPPPPPPPPPPPPPPQPPPPPPPPPPPPPPPPPPPPPPPQQPKKKKKQKPPPQQQQQQQQQQQ
6 6 A T H <> S+ 0 0 47 90 58 TTTTTTTTTTTTTTTTTTTTTMTTTTTTTTTTTATTTTTTTTTTATTTTTTTTTATALLAAAAAAAAAAA
7 7 A C H > S+ 0 0 13 90 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
8 8 A R H >X S+ 0 0 203 90 72 RRRRRRRRRGGGGGRRRRRRRRQRRRRQRRRQQRQCCQQQQQQQQQQQQQQQQQQQQSSQQQQQQQQQQQ
9 9 A N H 3X S+ 0 0 98 90 26 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTANNSSNNNNNNNNNNNYNNNNNNNNNNNNNNNNNNNNN
10 10 A R H 3< S+ 0 0 73 90 0 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR
11 11 A T H << S+ 0 0 60 90 19 TTTTTTTTTTTTTTTTTTTTITTIITITTTTTTTTLLTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12 12 A R H < S+ 0 0 144 90 5 RRRRRRRRRRRRRRRQRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRQRRRRRRRRRRRRRRR
13 13 A H S < S+ 0 0 53 90 44 HHHHHHHHHHHHHHHHHHHHRHHHHRRRRRRRRRRRRRRRRRRRRRQQRRRRRRRRRRRRRRRRRRRRRR
14 14 A L S S+ 0 0 29 90 5 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVVLLLLLLLLLLLLLLLVLLLLLLLLLLLLLL
15 15 A P S S+ 0 0 100 90 0 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
16 16 A L S > S- 0 0 86 90 25 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFLLLLLLLLVLLIIIIIIIIIII
17 17 A Q T 3 + 0 0 162 90 82 QQQQQQQQQQQQQQHQQQQQHQQQQQHQQQQQQQNHHSSSSSSSSSAARSSSSSASGDDAAAAAAAAAAA
18 18 A F T 3 S+ 0 0 203 90 32 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
19 19 A S < + 0 0 10 90 37 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSAASSSSSSSSSSS
20 20 A R S S- 0 0 211 90 17 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRQQRRRRRRRRRRRQRRQRRKRRRRRRRRRRRRRRRRRRRRR
21 21 A T S S+ 0 0 68 90 70 TTTTTTTTTTTTTTNSNNNNNNNNNNNNNNNSSNNNNSSSSSNSNNTTNNNNNNSNHKKHHQQQQQHHHH
22 22 A G S S- 0 0 54 90 29 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFGGGGGGGGGGG
23 23 A P S > S+ 0 0 48 90 24 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPPPPPPPPPPPP
24 24 A L T 4 S- 0 0 21 90 49 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLIVVVILILLKKLIIIIIMIIDDIIIIIIIIIII
25 25 A C T 4 S+ 0 0 3 90 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
26 26 A P T 4 S+ 0 0 111 90 55 PPPPPPPPPPPPPPPPQQQQPPQQQQPQQQQQQQQPPQPPQQQQQQQQPQQQQQPQPPPPPPPPPPPPPP
27 27 A A S < S+ 0 0 44 90 46 AAAAAAAAAAAAAAAAVVVVAAAVVVAVVVVTTVAVVAAAAAGAAAAAVAAAAAAAAAVAAAAAAAAAAA
28 28 A C - 0 0 41 90 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
29 29 A M + 0 0 185 90 85 MMMMMMMMMMMMMMMMMMMMMTMMMVMMVMMMMMMMMRRRRRKRRKMMKSSSSSMTTKKTSSSSSSSSST
30 30 A K 0 0 54 86 24 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKR RRRRRRRRRRR
31 31 A A 0 0 131 86 16 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA
## ALIGNMENTS 71 - 89
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A I 0 0 120 82 24 LLLLV VVVVVL III V
2 2 A C + 0 0 16 90 0 CCCCCCCCCCCCCCCCCCC
3 3 A E > - 0 0 163 90 0 EEEEEEEEEEEEEEEEEEE
4 4 A E T 3> S+ 0 0 167 90 26 DDDDDNDDDDDDNNDDDDD
5 5 A P H 3> S+ 0 0 99 90 49 QQQQQPPPPPPQPPPTTPS
6 6 A T H <> S+ 0 0 47 90 58 AAAAALAAAAAALLASSSV
7 7 A C H > S+ 0 0 13 90 0 CCCCCCCCCCCCCCCCCCC
8 8 A R H >X S+ 0 0 203 90 72 RRRRQSGGGGGGSSTAADC
9 9 A N H 3X S+ 0 0 98 90 26 NNNNNNHHHHHNNNNHHHH
10 10 A R H 3< S+ 0 0 73 90 0 RRRRRRRRRRRRRRRRRRR
11 11 A T H << S+ 0 0 60 90 19 IIIITTTTTTTTTTTTTTT
12 12 A R H < S+ 0 0 144 90 5 RRRRRRRRRRRRRRQRRRR
13 13 A H S < S+ 0 0 53 90 44 RRRRRRTTTTTRRRRRRQR
14 14 A L S S+ 0 0 29 90 5 LLLLLLLLLLLLLLVLLVL
15 15 A P S S+ 0 0 100 90 0 PPPPPPPPPPPPPPPPPPP
16 16 A L S > S- 0 0 86 90 25 IIIIVLVVVVVILLMLLLL
17 17 A Q T 3 + 0 0 162 90 82 AAAAADLLLLLADDKNNMR
18 18 A F T 3 S+ 0 0 203 90 32 FFFFFFAAAAAFFFFPPHF
19 19 A S < + 0 0 10 90 37 SSSSSVEEEEESTASHHHV
20 20 A R S S- 0 0 211 90 17 RRRRRKRRRRRHKKNRRRK
21 21 A T S S+ 0 0 68 90 70 SSSSSKNNNNNSKKTQQGA
22 22 A G S S- 0 0 54 90 29 GGGGGFGGGGGGFFFGGTS
23 23 A P S > S+ 0 0 48 90 24 PPPPPPVVVVVPPPPFFPP
24 24 A L T 4 S- 0 0 21 90 49 IIIIIDLLLLLIDDVVVTL
25 25 A C T 4 S+ 0 0 3 90 0 CCCCCCCCCCCCCCCCCCC
26 26 A P T 4 S+ 0 0 111 90 55 PPPPPPSSSSSPSSNPPPF
27 27 A A S < S+ 0 0 44 90 46 AAAALVAAAAAVMMLVVNA
28 28 A C - 0 0 41 90 0 CCCCCCCCCCCCCCCCCCC
29 29 A M + 0 0 185 90 85 LLLLCKFFFFFCKKNQQHE
30 30 A K 0 0 54 86 24 RRRRKDKKKKKK KRRRR
31 31 A A 0 0 131 86 16 SSSSSAAAAAAS GAAAS
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 33 7 55 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 82 0 0 1.034 34 0.75
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 90 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 90 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 60 6 34 90 0 0 0.834 27 0.74
5 5 A 0 0 0 0 0 0 0 0 0 67 1 2 0 0 0 7 23 0 0 0 90 0 0 0.925 30 0.51
6 6 A 1 6 0 1 0 0 0 0 30 0 3 59 0 0 0 0 0 0 0 0 90 0 0 1.047 34 0.41
7 7 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 90 0 0 0.000 0 1.00
8 8 A 0 0 0 0 0 0 0 12 2 0 6 1 3 0 33 0 41 0 0 1 90 0 0 1.447 48 0.28
9 9 A 0 0 0 0 0 0 1 0 1 0 2 1 0 10 0 0 0 0 84 0 90 0 0 0.608 20 0.74
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 90 0 0 0.000 0 1.00
11 11 A 0 2 9 0 0 0 0 0 0 0 0 89 0 0 0 0 0 0 0 0 90 0 0 0.404 13 0.81
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 3 0 0 0 90 0 0 0.146 4 0.94
13 13 A 0 0 0 0 0 0 0 0 0 0 0 6 0 28 63 0 3 0 0 0 90 0 0 0.919 30 0.55
14 14 A 6 94 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90 0 0 0.215 7 0.94
15 15 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 90 0 0 0.000 0 1.00
16 16 A 8 71 18 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 90 0 0 0.883 29 0.75
17 17 A 0 6 0 1 0 0 0 1 22 0 17 0 0 6 2 1 36 0 3 6 90 0 0 1.830 61 0.18
18 18 A 0 0 0 0 91 0 0 0 6 2 0 0 0 1 0 0 0 0 0 0 90 0 0 0.380 12 0.67
19 19 A 2 0 0 0 0 0 0 0 3 0 84 1 0 3 0 0 0 6 0 0 90 0 0 0.665 22 0.62
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 1 88 6 4 0 1 0 90 0 0 0.513 17 0.83
21 21 A 0 0 0 0 0 0 0 1 1 0 18 20 0 8 0 6 8 0 39 0 90 0 0 1.654 55 0.30
22 22 A 0 0 0 0 7 0 0 91 0 0 1 1 0 0 0 0 0 0 0 0 90 0 0 0.365 12 0.71
23 23 A 6 0 0 0 2 0 0 0 1 91 0 0 0 0 0 0 0 0 0 0 90 0 0 0.380 12 0.75
24 24 A 7 52 31 1 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 6 90 0 0 1.228 40 0.51
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 90 0 0 0.000 0 1.00
26 26 A 0 0 0 0 1 0 0 0 0 56 8 0 0 0 0 0 34 0 1 0 90 0 0 0.992 33 0.45
27 27 A 22 2 0 2 0 0 0 1 69 0 0 2 0 0 0 0 0 0 1 0 90 0 0 0.945 31 0.54
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 90 0 0 0.000 0 1.00
29 29 A 2 4 0 42 6 0 0 0 0 0 16 6 2 1 8 9 2 1 1 0 90 0 0 1.931 64 0.14
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 23 76 0 0 0 1 86 0 0 0.603 20 0.75
31 31 A 0 0 0 0 0 0 0 1 91 0 8 0 0 0 0 0 0 0 0 0 86 0 0 0.345 11 0.83
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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