Complet list of 1jr5 hssp file
Complete list of 1jr5.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JR5
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER TRANSCRIPTION 10-AUG-01 1JR5
COMPND MOL_ID: 1; MOLECULE: 10 KDA ANTI-SIGMA FACTOR; CHAIN: A, B; SYNONYM: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; ORGANISM_TAXI
AUTHOR J.L.URBAUER,M.F.SIMEONOV,R.J.BIEBER URBAUER,K.ADELMAN, J.M.GILMORE,E.N
DBREF 1JR5 A 1 90 UNP P32267 ASIA_BPT4 1 90
DBREF 1JR5 B 1 90 UNP P32267 ASIA_BPT4 1 90
SEQLENGTH 90
NCHAIN 2 chain(s) in 1JR5 data set
KCHAIN 1 chain(s) used here ; chains(s) : A
NALIGN 41
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : ASIA_BPT4 1.00 1.00 1 90 1 90 90 0 0 90 P32267 10 kDa anti-sigma factor OS=Enterobacteria phage T4 GN=asiA PE=1 SV=1
2 : C3V1W0_9CAUD 1.00 1.00 1 90 1 90 90 0 0 90 C3V1W0 AsiA OS=Enterobacteria phage RB14 GN=asiA PE=4 SV=1
3 : D4ZA57_BPAR1 1.00 1.00 1 90 1 90 90 0 0 90 D4ZA57 Anti-sigma factor OS=Enterobacteria phage AR1 GN=asiA PE=4 SV=1
4 : D9IET9_BPT4 1.00 1.00 1 90 1 90 90 0 0 90 D9IET9 Anti-sigma 70 protein OS=Enterobacteria phage T4 GN=asiA PE=4 SV=1
5 : F2VXI6_9CAUD 1.00 1.00 1 90 1 90 90 0 0 90 F2VXI6 Putative uncharacterized protein OS=Shigella phage Shfl2 GN=Shfl2p255 PE=4 SV=1
6 : G1FHH2_9CAUD 1.00 1.00 1 90 1 90 90 0 0 90 G1FHH2 Anti-sigma 70 protein OS=Enterobacteria phage ime09 GN=asiA PE=4 SV=1
7 : I7AUC1_9VIRU 1.00 1.00 1 90 1 90 90 0 0 90 I7AUC1 Uncharacterized protein OS=Escherichia phage ECML-134 GN=ECML134_249 PE=4 SV=1
8 : K4FC50_9CAUD 1.00 1.00 1 90 1 90 90 0 0 90 K4FC50 Anti-sigma 70 protein OS=Enterobacteria phage vB_EcoM_ACG-C40 GN=ACG-C40_0251 PE=4 SV=1
9 : Q06E80_BPR32 1.00 1.00 1 90 1 90 90 0 0 90 Q06E80 AsiA OS=Enterobacteria phage RB32 GN=asiA PE=4 SV=1
10 : S5MRK7_9CAUD 1.00 1.00 1 90 1 90 90 0 0 90 S5MRK7 Anti-sigma 70 protein OS=Yersinia phage PST GN=asiA PE=4 SV=1
11 : C3V2N7_BPR51 0.99 0.99 1 90 1 90 90 0 0 90 C3V2N7 AsiA OS=Enterobacteria phage RB51 GN=asiA PE=4 SV=1
12 : G0X5A0_9CAUD 0.99 1.00 1 73 1 73 73 0 0 76 G0X5A0 Anti-sigma 70 protein OS=Escherichia phage wV7 PE=4 SV=1
13 : Q7Y4Q5_BPR69 0.73 0.91 1 90 1 90 90 0 0 90 Q7Y4Q5 AsiA anti-sigma 70 protein OS=Enterobacteria phage RB69 GN=asiA PE=4 SV=1
14 : I7J486_9CAUD 0.72 0.91 1 90 1 90 90 0 0 90 I7J486 Uncharacterized protein OS=Yersinia phage phiD1 GN=g257 PE=4 SV=1
15 : K0G7R3_9CAUD 0.72 0.91 1 90 1 90 90 0 0 90 K0G7R3 Uncharacterized protein OS=Enterobacteria phage HX01 GN=HX01_0196 PE=4 SV=1
16 : W6B2Y6_9CAUD 0.60 0.87 4 89 3 89 87 1 1 90 W6B2Y6 Anti-sigma 70 protein OS=Enterobacter phage PG7 GN=asiA PE=4 SV=1
17 : E5DHZ2_9CAUD 0.59 0.87 4 89 3 89 87 1 1 90 E5DHZ2 Anti-sigma 70 protein OS=Enterobacteria phage CC31 GN=asiA PE=4 SV=1
18 : K4I5W1_9CAUD 0.56 0.84 4 90 3 90 88 1 1 90 K4I5W1 Uncharacterized protein OS=Salmonella phage STML-198 PE=4 SV=1
19 : M1EAI1_9CAUD 0.56 0.84 4 90 3 90 88 1 1 90 M1EAI1 Anti-sigma 70 protein OS=Salmonella phage S16 PE=4 SV=1
20 : E5E4L6_9CAUD 0.51 0.75 5 89 3 87 85 0 0 92 E5E4L6 AsiA anti-sigma 70 protein OS=Acinetobacter phage Acj61 GN=asiA PE=4 SV=1
21 : C4MZY9_9CAUD 0.50 0.76 4 90 3 90 88 1 1 91 C4MZY9 AsiA anti-sigma 70 protein OS=Enterobacteria phage JS10 GN=asiA PE=4 SV=1
22 : D7RMQ1_9CAUD 0.49 0.76 4 90 8 95 88 1 1 96 D7RMQ1 AsiA anti-sigma 70 protein OS=Enterobacteria phage IME08 GN=asiA PE=4 SV=1
23 : E3SF69_9CAUD 0.49 0.75 4 89 3 89 87 1 1 91 E3SF69 Anti-sigma 70 protein OS=Shigella phage SP18 GN=asiA PE=4 SV=1
24 : E5FJ32_9CAUD 0.49 0.75 4 89 3 89 87 1 1 91 E5FJ32 AsiA anti-sigma 70 protein OS=Enterobacteria phage vB_EcoM-VR7 GN=asiA PE=4 SV=1
25 : G0YKD2_9CAUD 0.49 0.79 5 86 3 84 82 0 0 92 G0YKD2 Anti-sigma 70 protein OS=Acinetobacter phage ZZ1 GN=asiA PE=4 SV=2
26 : G3MUK2_9CAUD 0.49 0.76 4 90 3 90 88 1 1 91 G3MUK2 Anti-sigma 70 protein OS=Enterobacteria phage Bp7 GN=asiA PE=4 SV=1
27 : A8R9N6_9CAUD 0.48 0.75 4 89 3 89 87 1 1 91 A8R9N6 AsiA anti-sigma 70 protein OS=Enterobacteria phage JS98 GN=asiA PE=4 SV=1
28 : I7J414_9CAUD 0.47 0.72 4 89 3 89 87 1 1 89 I7J414 AsiA anti-sigma 70 protein OS=Yersinia phage phiR1-RT GN=g254 PE=4 SV=1
29 : E5EQ30_9CAUD 0.45 0.76 5 86 3 84 82 0 0 92 E5EQ30 AsiA anti-sigma 70 protein OS=Acinetobacter phage Acj9 GN=asiA PE=4 SV=1
30 : E5EZ20_9CAUD 0.43 0.69 5 87 2 85 84 1 1 91 E5EZ20 AsiA anti-sigma 70 protein OS=Acinetobacter phage Ac42 GN=asiA PE=4 SV=1
31 : D9I6I4_9CAUD 0.41 0.69 5 86 2 84 83 1 1 92 D9I6I4 AsiA anti-sigma 70 protein OS=Acinetobacter phage 133 GN=asiA PE=4 SV=1
32 : I6XM06_9CAUD 0.41 0.71 5 76 6 78 73 1 1 90 I6XM06 Anti-sigma70 protein OS=Aeromonas phage CC2 GN=asiA PE=4 SV=1
33 : J7I4K9_9CAUD 0.39 0.72 7 90 6 90 85 1 1 91 J7I4K9 Anti-sigma 70 protein OS=Stenotrophomonas phage IME13 PE=4 SV=1
34 : E5DRZ5_9CAUD 0.38 0.69 1 76 1 77 77 1 1 97 E5DRZ5 AsiA anti-sigma70 protein OS=Aeromonas phage 65 GN=asiA PE=4 SV=1
35 : I6ZVU0_9CAUD 0.38 0.72 7 90 6 90 85 1 1 91 I6ZVU0 Anti-sigma 70 protein OS=Aeromonas phage Aes516 GN=asiA PE=4 SV=1
36 : J7KLV4_9CAUD 0.38 0.71 8 90 7 90 84 1 1 91 J7KLV4 Anti-sigma 70 protein OS=Aeromonas phage Aes508 GN=asiA PE=4 SV=1
37 : Q19CE8_9CAUD 0.38 0.72 7 90 6 90 85 1 1 91 Q19CE8 Host sigma70-binding protein OS=Aeromonas phage 25 GN=asiA PE=4 SV=1
38 : I6YMP8_9CAUD 0.37 0.71 8 90 7 90 84 1 1 91 I6YMP8 Host sigma70-binding protein OS=Aeromonas phage Aes012 GN=asiA PE=4 SV=1
39 : Q56ED8_9CAUD 0.37 0.70 8 90 7 90 84 1 1 90 Q56ED8 AsiA OS=Aeromonas phage 31 GN=asiA PE=4 SV=1
40 : Q6U976_9CAUD 0.37 0.70 8 90 7 90 84 1 1 90 Q6U976 Anti-sigma 70 protein OS=Aeromonas phage 44RR2.8t GN=asiA PE=4 SV=1
41 : E1A2L6_9CAUD 0.36 0.68 1 75 1 77 77 2 2 97 E1A2L6 Anti-sigma 70 protein OS=Aeromonas phage phiAS5 GN=phiAS5_ORF0119 PE=4 SV=1
## ALIGNMENTS 1 - 41
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 59 18 0 MMMMMMMMMMMMMMM M M
2 2 A N + 0 0 130 18 26 NNNNNNNNNNNNNNN S N
3 3 A K S >> S- 0 0 117 18 56 KKKKKKKKKKKKKKK N A
4 4 A N H 3> S+ 0 0 27 29 57 NNNNNNNNNNNNDDDKKKK KKKK KKE K K
5 5 A I H 3> S+ 0 0 13 35 38 IIIIIIIIIIIIIIIILFFFIIFFFIFLFYYV I L
6 6 A D H <> S+ 0 0 4 35 24 DDDDDDDDDDDDEEEEEEENEEEEEEEEENEE E E
7 7 A T H X S+ 0 0 0 38 56 TTTTTTTTTTTTIIIIIVVTIIIITIIITIVLTVT T L
8 8 A V H X S+ 0 0 7 42 33 VVVVVVVVVVVVVVVVVAALVVVVLVVILLLMILIIIIIIV
9 9 A R H X S+ 0 0 1 42 64 RRRRRRRRRRRRRRRRRRRASSSSQSSRCAAKKKKKKKKKK
10 10 A E H X S+ 0 0 0 42 10 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEDEEEEDDD
11 11 A I H X S+ 0 0 2 42 4 IIIIIIIIIIIIIIIIIVVIIIIIIIIIIIVIIIIIIIIII
12 12 A I H X S+ 0 0 0 42 25 IIIIIIIIIIIIIIIVVVVIAAVVIAVVVIIVIVIIIIIII
13 13 A T H X S+ 0 0 4 42 49 TTTTTTTTTTTTTTTTTTTATTTTATTTAAAASASSSSAAA
14 14 A V H >X S+ 0 0 0 42 37 VVVVVVVVVVVVIIIVVIIVIIVVVIIIVTVTITIIIITTT
15 15 A A H 3X S+ 0 0 1 42 31 AAAAAAAAAAAAAAAAAAAAVVTTAVTVAAAAAAAAAAAAV
16 16 A S H 3X S+ 0 0 14 42 0 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
17 17 A I H <>S+ 0 0 0 42 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 19 A I H ><5S+ 0 0 43 42 5 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIAIIIIIIIII
20 20 A K H 3<5S+ 0 0 63 42 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
21 21 A F T <<5S- 0 0 28 42 41 FFFFFFFFFFFFFFFFFFFFTTTTFTTTFFFYFFFFFFFFL
22 22 A S T < 5S+ 0 0 91 42 49 SSSSSSSSSSSSSSSGGGGGDDDDGDDDGGGGGGGGGGGGE
23 23 A R >>< + 0 0 114 42 81 RRRRRRRRRRRRRRRSSRRFCCRRHCRCHHYCCRCCCCCCV
24 24 A E H 3> + 0 0 86 42 14 EEEEEEEEEEEEEEEEEDDDEEEEDEEDDDDDEDEEEEEEE
25 25 A D H 34 S+ 0 0 132 42 12 DDDDDDDDDDDDDDDHHDDDDDDDDDDDDDEDDDDDDDDDg
26 26 A I H X4 S+ 0 0 27 42 0 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIi
27 27 A V H 3< S+ 0 0 2 42 40 VVVVVVVVVVVVVVVLLVVLMMTTLMTLLLLLLLLLLLLLL
28 28 A E T 3< S+ 0 0 102 42 54 EEEEEEEEEEEEEEEEEDDEQQMMEQMTEEEDNDNNNNNND
29 29 A N <> - 0 0 75 42 58 NNNNNNNNNNNNDDDKKKKNRRKKNRKSHNNTNTNNNNKKT
30 30 A R H > S+ 0 0 132 42 43 RRRRRRRRRRRRRRRRRRRHRRRRKRRRRQKQQQQQQQQQQ
31 31 A A H > S+ 0 0 52 42 69 AAAAAAAAAAAAAAAEEDDNDDDDADDDPRVSEREEEEEEQ
32 32 A N H > S+ 0 0 57 42 89 NNNNNNNNNNNNNSSHHNNLEEVVLEVGLTLGLGLLLLTTN
33 33 A F H X S+ 0 0 3 42 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFL
34 34 A I H X S+ 0 0 14 42 12 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIVVVVIVVVVVVI
35 35 A A H X S+ 0 0 40 42 42 AAAAAAAAAAAAGGGAAAAAAAAAAAAAAAADSDSSSSSSD
36 36 A F H >X S+ 0 0 0 42 0 FFFFFFFFFFFFFFFFFFFYFFFFFFFFFFFFFFFFFFFFF
37 37 A L H 3X>S+ 0 0 0 42 4 LLLLLLLLLLLLLLLLLIILLLLLLLLLLLLLLLLLLLLLL
38 38 A N H 3<5S+ 0 0 84 42 4 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNN
39 39 A E H <<5S+ 0 0 101 42 5 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEETEEEEEEE
40 40 A I H <5S- 0 0 12 42 48 IIIIIIIIIIIIIIIIITTLLLLLLLLALLLLLALLLLLLA
41 41 A G T <5 + 0 0 24 42 21 GGGGGGGGGGGGGGGGGMMEGGGGGGGGGGKGGGGGGGGGG
42 42 A V < + 0 0 0 42 47 VVVVVVVVVVVVIIIIISSIIILLIILIIFIFLFLLLLFFF
43 43 A T - 0 0 15 42 67 TTTTTTTTTTMTKKKKKAATRRRRTRRRTKKTKTKKKKRRR
44 44 A H S S+ 0 0 26 42 86 HHHHHHHHHHHHKKKnnddInnnnInnnVtststsssssst
45 45 A E S S- 0 0 114 42 82 EEEEEEEEEEEEDDDllnnQhhnnGhnfNetrssssssttr
46 46 A G S S+ 0 0 33 42 23 GGGGGGGGGGGGGGGGGWWGGGGGNGGGAGGGGGGGGGGGG
47 47 A R S S- 0 0 118 42 66 RRRRRRRRRRRRRRRRRKKKKKNNKKNRRRAKEKEEEEEEL
48 48 A K - 0 0 46 42 67 KKKKKKKKKKKKQQQPPQQKEEEEKEETKPPPEPEEDEEEE
49 49 A L - 0 0 0 42 21 LLLLLLLLLLLLLLLLLLLVLLLLVLLLVIILFLFFFFFFF
50 50 A N - 0 0 116 42 51 NNNNNNNNNNNNNNNNNNNTNNNNTNNNTTTTTTTTTTTTT
51 51 A Q S > S+ 0 0 56 42 81 QQQQQQQQQQQQQQQQQQQSGGNNAGNGSLVIRIRRRRRRK
52 52 A N H > S+ 0 0 97 42 87 NNNNNNNNNNNNNNNSSSSALLVVTLVAATHFAQAAAAAAM
53 53 A S H > S+ 0 0 7 42 46 SSSSSSSSSSSSSSSNNSSNSSSSSSSNSNTNGNGGGGGGS
54 54 A F H > S+ 0 0 8 42 6 FFFFFFFFFFFFFFFFFFFLFYFFLYFFLLLFFFFFFFFFF
55 55 A R H X S+ 0 0 116 42 53 RRRRRRRRRRRRRRRRRRRYNNNNWNNKFFTRRRRRRRRRR
56 56 A K H X S+ 0 0 111 42 57 KKKKKKKKKKKKKKKKKKKMKKKKNKKKENTVQVQQQQQQQ
57 57 A I H < S+ 0 0 4 42 32 IIIIIIIIIIIILLLMMIILLLLLLLLLLMMMMMMMMMMMM
58 58 A V H >< S+ 0 0 14 42 65 VVVVVVVVVVVVIIIIIIITFFFFTFFATTSVMVMMMMMMV
59 59 A S H 3< S+ 0 0 90 42 72 SSSSSSSSSSSSTTTEESSQKKKKQKKDQQESKKKKKKKKG
60 60 A E T 3< S+ 0 0 144 42 74 EEEEEEEEEEEENNNEEDDESSSSDSSGDDNSRSRRRRRRR
61 61 A L < - 0 0 23 42 13 LLLLLLLLLLLLLLLMMLLILLLLILLLIIILLLLLLLLLL
62 62 A T > - 0 0 56 42 45 TTTTTTTTTTTTTTTTTTTTTTSSTTSSTTTTPKPPPPPPT
63 63 A Q H > S+ 0 0 117 42 74 QQQQQQQQQQQQAAAAAAATEEEENEEVNTTQAPAAAAIID
64 64 A E H > S+ 0 0 111 42 49 EEEEEEEEEEEEEEEEEEESDDDDRDDERRRYDSDDDDEEE
65 65 A D H > S+ 0 0 26 42 36 DDDDDDDDDDDDEEEEEEEQEEEEQEEEQEEQQQQQQQQQE
66 66 A K H X S+ 0 0 52 42 47 KKKKKKKKKKKKKKKKKKKKRRIIKRIKRKQKRIRRRRRRR
67 67 A K H X S+ 0 0 107 42 60 KKKKKKKKKKKKKKKQQGGKDEEEEDEEEDRKEKEEEEEEA
68 68 A T H < S+ 0 0 92 42 74 TTTTTTTTTTTTTTTQQMMQTTQQATQMQKQEEEEEEEEEE
69 69 A L H >X S+ 0 0 8 42 14 LLLLLLLLLLLLLLLLLLLLLLIILLILLLLILILLLLLLV
70 70 A I H 3< S+ 0 0 44 42 16 IIIIIIIIIIIIIIIVVVVIIIIIIIIIIIIIVFVVVVIIL
71 71 A D T 3< S+ 0 0 122 42 37 DDDDDDDDDDDDSSSEEEEEEEEEEEEESEDKEEEEEEEET
72 72 A E T <4 S+ 0 0 20 42 54 EEEEEEEEEEEEEEEEEEEEQQQQEQQEDEEEMEMMMMMME
73 73 A F S < S+ 0 0 9 42 0 FFFFFFFFFFFLFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
74 74 A N S S- 0 0 106 41 24 NNNNNNNNNNN NNNNNNNNNNNNLNNNLNNDNDNNNNNNS
75 75 A E S S+ 0 0 160 41 60 EEEEEEEEEEE EEEEEEEMEEEESEETVIIAQAQQQQQQA
76 76 A G S S+ 0 0 47 40 0 GGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGG
77 77 A F S >>>S+ 0 0 5 38 60 FFFFFFFFFFF FFFFFFFHYYFFHYFYHHH H HHHHHH
78 78 A E T 345S+ 0 0 145 38 41 EEEEEEEEEEE EEEEEEEEEEEEEEEEEEE R RRRRRR
79 79 A G T 345S+ 0 0 37 38 56 GGGGGGGGGGG NNNSSDDPDDDDPDDDPPP D DDDDDD
80 80 A V T <>5S+ 0 0 11 38 17 VVVVVVVVVVV IIIVVIIIIIIIIIIIIIL V IVIIVV
81 81 A Y T <5S+ 0 0 19 38 60 YYYYYYYYYYY YYYYYYYYHHHHYHHYYYY N NNNNNN
82 82 A R T > S+ 0 0 94 38 88 YYYYYYYYYYY HHHYYHHKYYYYKYYYKKR Q QQQQQQ
84 84 A L H X S+ 0 0 5 38 6 LLLLLLLLLLL LLLMMLLLLLLLLLLLLLL M MMMMMM
85 85 A E H 4 S+ 0 0 65 38 82 EEEEEEEEEEE TAAMMTTAMMMMTMMEAEE A IVIVMM
86 86 A M H < S+ 0 0 107 38 4 MMMMMMMMMMM MMMMMMMMMMMMMMMFMLM M MMMMMM
87 87 A Y H < S+ 0 0 34 35 16 YYYYYYYYYYY YYYYYHHYYYYY YYF H Y YYYYYY
88 88 A T S < S+ 0 0 6 34 33 TTTTTTTTTTT SSSSSTTTTTTT TTA T TTTTSS
89 89 A N 0 0 101 34 42 NNNNNNNNNNN NNNKKNNNSSSS SSR N NNNNNN
90 90 A K 0 0 99 27 66 KKKKKKKKKKK NNN KK NN N S SSSSNN
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 0 94 0 18 0 0 0.215 7 0.73
3 3 A 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 89 0 0 6 0 18 0 0 0.426 14 0.44
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 41 0 3 45 10 29 0 0 1.076 35 0.42
5 5 A 3 9 60 0 23 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 35 0 0 1.120 37 0.62
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 57 6 37 35 0 0 0.851 28 0.75
7 7 A 11 5 34 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 38 0 0 1.105 36 0.43
8 8 A 60 14 19 2 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.137 37 0.66
9 9 A 0 0 0 0 0 0 0 0 7 0 14 0 2 0 50 24 2 0 0 0 42 0 0 1.333 44 0.35
10 10 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 86 0 14 42 0 0 0.410 13 0.90
11 11 A 7 0 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.257 8 0.96
12 12 A 26 0 67 0 0 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.810 27 0.75
13 13 A 0 0 0 0 0 0 0 0 24 0 12 64 0 0 0 0 0 0 0 0 42 0 0 0.879 29 0.50
14 14 A 50 0 36 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 42 0 0 0.992 33 0.62
15 15 A 12 0 0 0 0 0 0 0 81 0 0 7 0 0 0 0 0 0 0 0 42 0 0 0.613 20 0.68
16 16 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
17 17 A 17 12 71 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.792 26 0.81
18 18 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
19 19 A 0 0 98 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.94
20 20 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 42 0 0 0.000 0 1.00
21 21 A 0 2 0 0 79 0 2 0 0 0 0 17 0 0 0 0 0 0 0 0 42 0 0 0.666 22 0.59
22 22 A 0 0 0 0 0 0 0 43 0 0 38 0 0 0 0 0 0 2 0 17 42 0 0 1.118 37 0.51
23 23 A 2 0 0 0 2 0 2 0 0 0 5 0 29 7 52 0 0 0 0 0 42 0 0 1.297 43 0.18
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 76 0 24 42 0 0 0.549 18 0.85
25 25 A 0 0 0 0 0 0 0 2 0 0 0 0 0 5 0 0 0 2 0 90 42 0 1 0.414 13 0.88
26 26 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.000 0 1.00
27 27 A 43 43 0 7 0 0 0 0 0 0 0 7 0 0 0 0 0 0 0 0 42 0 0 1.103 36 0.59
28 28 A 0 0 0 7 0 0 0 0 0 0 0 2 0 0 0 0 7 55 17 12 42 0 0 1.348 44 0.46
29 29 A 0 0 0 0 0 0 0 0 0 0 2 7 0 2 7 21 0 0 52 7 42 0 0 1.412 47 0.41
30 30 A 0 0 0 0 0 0 0 0 0 0 0 0 0 2 67 5 26 0 0 0 42 0 0 0.855 28 0.56
31 31 A 2 0 0 0 0 0 0 0 40 2 2 0 0 0 5 0 2 21 2 21 42 0 0 1.616 53 0.30
32 32 A 7 21 0 0 0 0 0 7 0 0 5 7 0 5 0 0 0 7 40 0 42 0 0 1.740 58 0.11
33 33 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.99
34 34 A 24 0 76 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.549 18 0.87
35 35 A 0 0 0 0 0 0 0 7 69 0 17 0 0 0 0 0 0 0 0 7 42 0 0 0.931 31 0.57
36 36 A 0 0 0 0 98 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 1.00
37 37 A 0 95 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.191 6 0.95
38 38 A 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 98 0 42 0 0 0.113 3 0.95
39 39 A 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 98 0 0 42 0 0 0.113 3 0.95
40 40 A 0 45 43 0 0 0 0 0 7 0 0 5 0 0 0 0 0 0 0 0 42 0 0 1.055 35 0.52
41 41 A 0 0 0 5 0 0 0 90 0 0 0 0 0 0 0 2 0 2 0 0 42 0 0 0.414 13 0.78
42 42 A 31 19 31 0 14 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 42 0 0 1.465 48 0.52
43 43 A 0 0 0 2 0 0 0 0 5 0 0 40 0 0 24 29 0 0 0 0 42 0 0 1.300 43 0.32
44 44 A 2 0 5 0 0 0 0 0 0 0 19 10 0 31 0 7 0 0 21 5 42 0 23 1.800 60 0.13
45 45 A 0 5 0 0 2 0 0 2 0 0 14 7 0 7 5 0 2 33 14 7 42 0 0 2.045 68 0.17
46 46 A 0 0 0 0 0 5 0 90 2 0 0 0 0 0 0 0 0 0 2 0 42 0 0 0.414 13 0.76
47 47 A 0 2 0 0 0 0 0 0 2 0 0 0 0 0 50 21 0 17 7 0 42 0 0 1.342 44 0.34
48 48 A 0 0 0 0 0 0 0 0 0 14 0 2 0 0 0 38 12 31 0 2 42 0 0 1.440 48 0.33
49 49 A 7 69 5 0 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.905 30 0.79
50 50 A 0 0 0 0 0 0 0 0 0 0 0 36 0 0 0 0 0 0 64 0 42 0 0 0.652 21 0.48
51 51 A 2 2 5 0 0 0 0 10 2 0 5 0 0 0 17 2 48 0 7 0 42 0 0 1.710 57 0.18
52 52 A 7 7 0 2 2 0 0 0 24 0 10 5 0 2 0 0 2 0 38 0 42 0 0 1.811 60 0.12
53 53 A 0 0 0 0 0 0 0 17 0 0 64 2 0 0 0 0 0 0 17 0 42 0 0 0.970 32 0.53
54 54 A 0 12 0 0 83 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.550 18 0.93
55 55 A 0 0 0 0 5 2 2 0 0 0 0 2 0 0 71 2 0 0 14 0 42 0 0 1.019 34 0.47
56 56 A 5 0 0 2 0 0 0 0 0 0 0 2 0 0 0 64 19 2 5 0 42 0 0 1.157 38 0.42
57 57 A 0 31 36 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 1.097 36 0.68
58 58 A 38 0 17 17 14 0 0 0 2 0 2 10 0 0 0 0 0 0 0 0 42 0 0 1.645 54 0.34
59 59 A 0 0 0 0 0 0 0 2 0 0 38 7 0 0 0 33 10 7 0 2 42 0 0 1.513 50 0.28
60 60 A 0 0 0 0 0 0 0 2 0 0 19 0 0 0 19 0 0 38 10 12 42 0 0 1.566 52 0.26
61 61 A 0 83 12 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.550 18 0.86
62 62 A 0 0 0 0 0 0 0 0 0 17 10 71 0 0 0 2 0 0 0 0 42 0 0 0.852 28 0.54
63 63 A 2 0 5 0 0 0 0 0 29 2 0 7 0 0 0 0 33 14 5 2 42 0 0 1.748 58 0.25
64 64 A 0 0 0 0 0 0 2 0 0 0 5 0 0 0 10 0 0 57 0 26 42 0 0 1.129 37 0.51
65 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 29 40 0 31 42 0 0 1.087 36 0.64
66 66 A 0 0 10 0 0 0 0 0 0 0 0 0 0 0 29 60 2 0 0 0 42 0 0 0.980 32 0.53
67 67 A 0 0 0 0 0 0 0 5 2 0 0 0 0 0 2 45 5 33 0 7 42 0 0 1.381 46 0.39
68 68 A 0 0 0 7 0 0 0 0 2 0 0 45 0 0 0 2 19 24 0 0 42 0 0 1.383 46 0.25
69 69 A 2 86 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.474 15 0.86
70 70 A 21 2 74 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.732 24 0.84
71 71 A 0 0 0 0 0 0 0 0 0 0 10 2 0 0 0 2 0 52 0 33 42 0 0 1.107 36 0.62
72 72 A 0 0 0 17 0 0 0 0 0 0 0 0 0 0 0 0 14 67 0 2 42 0 0 0.936 31 0.46
73 73 A 0 2 0 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 42 0 0 0.113 3 0.99
74 74 A 0 5 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 88 5 41 0 0 0.499 16 0.75
75 75 A 2 0 5 2 0 0 0 0 7 0 2 2 0 0 0 0 17 61 0 0 41 0 0 1.304 43 0.40
76 76 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 40 0 0 0.000 0 1.00
77 77 A 0 0 0 0 58 0 11 0 0 0 0 0 0 32 0 0 0 0 0 0 38 0 0 0.917 30 0.40
78 78 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 82 0 0 38 0 0 0.478 15 0.58
79 79 A 0 0 0 0 0 0 0 32 0 13 5 0 0 0 0 0 0 0 8 42 38 0 0 1.350 45 0.43
80 80 A 47 3 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.796 26 0.83
81 81 A 0 0 0 0 0 0 66 0 0 0 0 0 0 16 0 0 0 0 18 0 38 0 0 0.879 29 0.39
82 82 A 0 0 0 0 0 0 0 0 0 0 0 0 0 18 82 0 0 0 0 0 38 0 0 0.478 15 0.72
83 83 A 0 0 0 0 0 0 55 0 0 0 0 0 0 13 3 11 18 0 0 0 38 0 0 1.239 41 0.12
84 84 A 0 76 0 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.547 18 0.94
85 85 A 5 0 5 26 0 0 0 0 13 0 0 11 0 0 0 0 0 39 0 0 38 0 0 1.532 51 0.17
86 86 A 0 3 0 95 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 38 0 0 0.243 8 0.95
87 87 A 0 0 0 0 3 0 89 0 0 0 0 0 0 9 0 0 0 0 0 0 35 0 0 0.420 14 0.84
88 88 A 0 0 0 0 0 0 0 0 3 0 21 76 0 0 0 0 0 0 0 0 34 0 0 0.634 21 0.67
89 89 A 0 0 0 0 0 0 0 0 0 0 18 0 0 0 3 6 0 0 74 0 34 0 0 0.803 26 0.58
90 90 A 0 0 0 0 0 0 0 0 0 0 19 0 0 0 0 52 0 0 30 0 27 0 0 1.013 33 0.33
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
16 42 44 1 nDl
17 42 44 1 nDl
18 42 44 1 dKn
19 42 44 1 dKn
21 42 44 1 nEh
22 42 49 1 nEh
23 42 44 1 nEn
24 42 44 1 nEn
26 42 44 1 nEh
27 42 44 1 nEn
28 42 44 1 nEf
30 41 42 1 tVe
31 41 42 1 sHt
32 41 46 1 tVr
33 39 44 1 sPs
34 45 45 1 tPs
35 39 44 1 sPs
36 38 44 1 sPs
37 39 44 1 sPs
38 38 44 1 sPs
39 38 44 1 sPt
40 38 44 1 sPt
41 26 26 1 gEi
41 45 46 1 tVr
//