Complet list of 1jo6 hssp file
Complete list of 1jo6.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JO6
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER METAL TRANSPORT, MEMBRANE PROTEIN 27-JUL-01 1JO6
COMPND MOL_ID: 1; MOLECULE: POTASSIUM LARGE CONDUCTANCE CALCIUM-ACTIVATED CHA
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: THE 45-RESIDUE PEPTIDE WAS S
AUTHOR D.BENTROP,M.BEYERMANN,R.WISSMANN,B.FAKLER
DBREF 1JO6 A 1 45 UNP Q9Y691 KCMB2_HUMAN 1 45
SEQLENGTH 45
NCHAIN 1 chain(s) in 1JO6 data set
NALIGN 69
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B5BNW7_HUMAN 1.00 1.00 1 45 1 45 45 0 0 106 B5BNW7 Large-conductance Ca2+-activated K+ channel beta2 subunit OS=Homo sapiens GN=KCNMB2 PE=4 SV=1
2 : B5BNW9_HUMAN 1.00 1.00 1 45 1 45 45 0 0 111 B5BNW9 Large-conductance Ca2+-activated K+ channel beta2 subunit OS=Homo sapiens GN=KCNMB2 PE=4 SV=1
3 : B5BNX0_HUMAN 1.00 1.00 1 45 1 45 45 0 0 57 B5BNX0 Large-conductance Ca2+-activated K+ channel beta2 subunit OS=Homo sapiens GN=KCNMB2 PE=4 SV=1
4 : B5BNX1_HUMAN 1.00 1.00 1 45 1 45 45 0 0 94 B5BNX1 Large-conductance Ca2+-activated K+ channel beta2 subunit OS=Homo sapiens GN=KCNMB2 PE=4 SV=1
5 : B7Z513_HUMAN 1.00 1.00 1 45 36 80 45 0 0 270 B7Z513 cDNA FLJ55817, highly similar to Calcium-activated potassium channel subunit beta 2 OS=Homo sapiens PE=2 SV=1
6 : D3DNR0_HUMAN 1.00 1.00 1 45 1 45 45 0 0 227 D3DNR0 Potassium large conductance calcium-activated channel, subfamily M, beta member 2, isoform CRA_a OS=Homo sapiens GN=KCNMB2 PE=4 SV=1
7 : E2R1D0_CANFA 1.00 1.00 1 45 33 77 45 0 0 267 E2R1D0 Uncharacterized protein (Fragment) OS=Canis familiaris GN=KCNMB2 PE=4 SV=2
8 : E7EM81_HUMAN 1.00 1.00 1 45 1 45 45 0 0 100 E7EM81 Calcium-activated potassium channel subunit beta-2 (Fragment) OS=Homo sapiens GN=KCNMB2 PE=2 SV=1
9 : E7ETM2_HUMAN 1.00 1.00 1 45 1 45 45 0 0 137 E7ETM2 Calcium-activated potassium channel subunit beta-2 (Fragment) OS=Homo sapiens GN=KCNMB2 PE=2 SV=1
10 : F6PYL6_CALJA 1.00 1.00 1 45 1 45 45 0 0 93 F6PYL6 Uncharacterized protein OS=Callithrix jacchus GN=KCNMB2 PE=4 SV=1
11 : F6PZE6_CALJA 1.00 1.00 1 45 1 45 45 0 0 235 F6PZE6 Calcium-activated potassium channel subunit beta-2 OS=Callithrix jacchus GN=KCNMB2 PE=2 SV=1
12 : F6YER2_HORSE 1.00 1.00 1 45 1 45 45 0 0 235 F6YER2 Uncharacterized protein OS=Equus caballus GN=KCNMB2 PE=4 SV=1
13 : F7BID2_MACMU 1.00 1.00 1 45 37 81 45 0 0 271 F7BID2 Uncharacterized protein OS=Macaca mulatta GN=KCNMB2 PE=4 SV=1
14 : F7G3H2_MONDO 1.00 1.00 1 45 1 45 45 0 0 235 F7G3H2 Uncharacterized protein OS=Monodelphis domestica GN=KCNMB2 PE=4 SV=1
15 : G1LW33_AILME 1.00 1.00 1 45 37 81 45 0 0 271 G1LW33 Uncharacterized protein OS=Ailuropoda melanoleuca GN=KCNMB2 PE=4 SV=1
16 : G1P767_MYOLU 1.00 1.00 1 45 36 80 45 0 0 270 G1P767 Uncharacterized protein (Fragment) OS=Myotis lucifugus GN=KCNMB2 PE=4 SV=1
17 : G1R0X5_NOMLE 1.00 1.00 1 45 24 68 45 0 0 258 G1R0X5 Uncharacterized protein (Fragment) OS=Nomascus leucogenys GN=KCNMB2 PE=4 SV=1
18 : G1SP15_RABIT 1.00 1.00 1 45 24 68 45 0 0 258 G1SP15 Uncharacterized protein OS=Oryctolagus cuniculus GN=KCNMB2 PE=4 SV=2
19 : G3IFT6_CRIGR 1.00 1.00 1 45 1 45 45 0 0 235 G3IFT6 Calcium-activated potassium channel subunit beta-2 OS=Cricetulus griseus GN=I79_022609 PE=4 SV=1
20 : G3RI99_GORGO 1.00 1.00 1 45 1 45 45 0 0 235 G3RI99 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101142833 PE=4 SV=1
21 : G3V7A1_RAT 1.00 1.00 1 45 1 45 45 0 0 235 G3V7A1 Calcium-activated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnmb2 PE=4 SV=1
22 : G3WSL5_SARHA 1.00 1.00 1 45 36 80 45 0 0 270 G3WSL5 Uncharacterized protein (Fragment) OS=Sarcophilus harrisii GN=KCNMB2 PE=4 SV=1
23 : G7NZ33_MACFA 1.00 1.00 1 45 37 81 45 0 0 271 G7NZ33 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_10878 PE=4 SV=1
24 : H0XDX5_OTOGA 1.00 1.00 1 45 1 45 45 0 0 235 H0XDX5 Uncharacterized protein OS=Otolemur garnettii GN=KCNMB2 PE=4 SV=1
25 : H2PC26_PONAB 1.00 1.00 1 45 1 45 45 0 0 235 H2PC26 Uncharacterized protein OS=Pongo abelii GN=KCNMB2 PE=4 SV=1
26 : H2RG19_PANTR 1.00 1.00 1 45 1 45 45 0 0 235 H2RG19 Uncharacterized protein OS=Pan troglodytes GN=KCNMB2 PE=4 SV=1
27 : H9ENY7_MACMU 1.00 1.00 1 45 1 45 45 0 0 235 H9ENY7 Calcium-activated potassium channel subunit beta-2 OS=Macaca mulatta GN=KCNMB2 PE=2 SV=1
28 : J9P053_CANFA 1.00 1.00 1 45 1 45 45 0 0 235 J9P053 Uncharacterized protein OS=Canis familiaris GN=KCNMB2 PE=4 SV=1
29 : KCMB2_HUMAN 1.00 1.00 1 45 1 45 45 0 0 235 Q9Y691 Calcium-activated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNMB2 PE=1 SV=1
30 : KCMB2_RAT 1.00 1.00 1 45 1 45 45 0 0 235 Q811Q0 Calcium-activated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnmb2 PE=2 SV=1
31 : L5LGJ3_MYODS 1.00 1.00 1 45 1 45 45 0 0 235 L5LGJ3 Calcium-activated potassium channel subunit beta-2 OS=Myotis davidii GN=MDA_GLEAN10016659 PE=4 SV=1
32 : M0QSR6_9CETA 1.00 1.00 1 45 1 45 45 0 0 235 M0QSR6 Calcium-activated potassium channel subunit beta-2 OS=Bos mutus GN=M91_09222 PE=4 SV=1
33 : M3W566_FELCA 1.00 1.00 1 45 37 81 45 0 0 271 M3W566 Uncharacterized protein OS=Felis catus GN=KCNMB2 PE=4 SV=1
34 : Q1RMW7_BOVIN 1.00 1.00 1 45 1 45 45 0 0 235 Q1RMW7 Potassium large conductance calcium-activated channel, subfamily M beta member 3 OS=Bos taurus GN=KCNMB3 PE=2 SV=1
35 : Q66HT3_RAT 1.00 1.00 1 45 1 45 45 0 0 174 Q66HT3 Kcnmb2 protein OS=Rattus norvegicus GN=Kcnmb2 PE=2 SV=1
36 : S7Q476_MYOBR 1.00 1.00 1 45 94 138 45 0 0 328 S7Q476 Calcium-activated potassium channel subunit beta-2 OS=Myotis brandtii GN=D623_10020971 PE=4 SV=1
37 : W5QHR4_SHEEP 1.00 1.00 1 45 37 81 45 0 0 271 W5QHR4 Uncharacterized protein OS=Ovis aries GN=KCNMB2 PE=4 SV=1
38 : B5BNW1_MOUSE 0.98 1.00 1 45 1 45 45 0 0 130 B5BNW1 Large-conductance Ca2+-activated K+ channel beta2 subunit OS=Mus musculus GN=Kcnmb2 PE=2 SV=1
39 : F1SGC9_PIG 0.98 1.00 1 45 36 80 45 0 0 270 F1SGC9 Uncharacterized protein (Fragment) OS=Sus scrofa GN=KCNMB2 PE=4 SV=2
40 : G3SV70_LOXAF 0.98 1.00 1 45 1 45 45 0 0 235 G3SV70 Uncharacterized protein OS=Loxodonta africana GN=KCNMB2 PE=4 SV=1
41 : G5C1G6_HETGA 0.98 1.00 1 45 1 45 45 0 0 235 G5C1G6 Calcium-activated potassium channel subunit beta-2 OS=Heterocephalus glaber GN=GW7_14119 PE=4 SV=1
42 : G9K6V1_MUSPF 0.98 1.00 1 45 15 59 45 0 0 126 G9K6V1 Calcium-activated potassium channel beta 2 subunit (Fragment) OS=Mustela putorius furo PE=2 SV=1
43 : H0VPX8_CAVPO 0.98 1.00 1 45 1 45 45 0 0 235 H0VPX8 Uncharacterized protein OS=Cavia porcellus GN=Kcnmb2 PE=4 SV=1
44 : KCMB2_MOUSE 0.98 1.00 1 45 1 45 45 0 0 235 Q9CZM9 Calcium-activated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnmb2 PE=2 SV=1
45 : M3Z0I5_MUSPF 0.98 1.00 1 45 27 71 45 0 0 261 M3Z0I5 Uncharacterized protein OS=Mustela putorius furo GN=KCNMB2 PE=4 SV=1
46 : U6DY14_NEOVI 0.98 1.00 1 45 1 45 45 0 0 190 U6DY14 Calcium-activated potassium channel subunit beta-2 (Fragment) OS=Neovison vison GN=KCMB2 PE=2 SV=1
47 : G1NC17_MELGA 0.96 1.00 1 45 31 75 45 0 0 267 G1NC17 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=KCNMB2 PE=4 SV=2
48 : H0ZKI1_TAEGU 0.96 0.98 1 45 1 45 45 0 0 235 H0ZKI1 Uncharacterized protein OS=Taeniopygia guttata GN=KCNMB2 PE=4 SV=1
49 : K7GBR7_PELSI 0.96 1.00 1 45 1 45 45 0 0 235 K7GBR7 Uncharacterized protein OS=Pelodiscus sinensis GN=KCNMB2 PE=4 SV=1
50 : R4GHT5_CHICK 0.96 1.00 1 45 32 76 45 0 0 266 R4GHT5 Uncharacterized protein OS=Gallus gallus GN=KCNMB2 PE=4 SV=1
51 : U3J160_ANAPL 0.96 1.00 1 45 1 45 45 0 0 235 U3J160 Uncharacterized protein OS=Anas platyrhynchos GN=KCNMB2 PE=4 SV=1
52 : U3K165_FICAL 0.96 0.98 1 45 31 75 45 0 0 265 U3K165 Uncharacterized protein OS=Ficedula albicollis GN=KCNMB2 PE=4 SV=1
53 : F6ZUJ3_ORNAN 0.70 0.77 2 45 2 45 44 0 0 235 F6ZUJ3 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus GN=KCNMB2 PE=4 SV=1
54 : W5LYM2_LEPOC 0.69 0.87 1 45 1 44 45 1 1 234 W5LYM2 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
55 : H3B867_LATCH 0.64 0.79 4 45 1 42 42 0 0 233 H3B867 Uncharacterized protein (Fragment) OS=Latimeria chalumnae PE=4 SV=1
56 : W5KR71_ASTMX 0.60 0.75 1 45 1 48 48 1 3 241 W5KR71 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
57 : H3CQV4_TETNG 0.59 0.79 7 45 7 45 39 0 0 239 H3CQV4 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
58 : H2ST33_TAKRU 0.57 0.80 1 45 1 46 46 1 1 236 H2ST33 Uncharacterized protein OS=Takifugu rubripes GN=LOC101075109 PE=4 SV=1
59 : I3JX48_ORENI 0.57 0.83 1 45 36 81 46 1 1 271 I3JX48 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100705462 PE=4 SV=1
60 : M4ANS7_XIPMA 0.56 0.80 1 45 1 43 45 1 2 233 M4ANS7 Uncharacterized protein OS=Xiphophorus maculatus GN=KCNMB1 PE=4 SV=1
61 : V9KI35_CALMI 0.56 0.82 1 45 1 45 45 0 0 239 V9KI35 Calcium-activated potassium channel subunit beta-2-like protein OS=Callorhynchus milii PE=2 SV=1
62 : V9LHN8_CALMI 0.56 0.82 1 45 20 64 45 0 0 167 V9LHN8 Calcium-activated potassium channel subunit beta-2-like protein (Fragment) OS=Callorhynchus milii PE=2 SV=1
63 : E7FCW4_DANRE 0.53 0.82 1 45 1 45 45 0 0 234 E7FCW4 Uncharacterized protein OS=Danio rerio GN=LOC796753 PE=4 SV=1
64 : H2MHA6_ORYLA 0.53 0.78 1 45 1 43 45 1 2 233 H2MHA6 Uncharacterized protein OS=Oryzias latipes GN=LOC101158266 PE=4 SV=1
65 : Q4SP83_TETNG 0.52 0.74 2 45 52 97 46 1 2 293 Q4SP83 Chromosome 15 SCAF14542, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00014962001 PE=4 SV=1
66 : G3NH41_GASAC 0.47 0.79 1 45 1 47 47 1 2 237 G3NH41 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
67 : W5LIM7_ASTMX 0.47 0.73 1 45 22 64 45 1 2 254 W5LIM7 Uncharacterized protein (Fragment) OS=Astyanax mexicanus PE=4 SV=1
68 : A5WVU1_DANRE 0.40 0.71 1 45 1 42 45 1 3 232 A5WVU1 Uncharacterized protein OS=Danio rerio GN=kcnmb2 PE=4 SV=1
69 : Q5BL22_DANRE 0.40 0.71 1 45 1 42 45 1 3 232 Q5BL22 Zgc:101842 OS=Danio rerio GN=kcnmb2 PE=2 SV=1
## ALIGNMENTS 1 - 69
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A M 0 0 226 66 0 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMM M L MMMMMMM MMMM
2 2 A F - 0 0 178 68 0 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF F FFFFFFFFFFFF
3 3 A I - 0 0 106 68 40 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIILL I FFLLLLLLLFFF
4 4 A W S S+ 0 0 213 69 65 WWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWWW VVFWWWWGWVVV
5 5 A T S S- 0 0 73 69 63 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSD AAVAAAVAATKK
6 6 A S + 0 0 116 69 67 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSYGLr ggGTTGGegGGG
7 7 A G - 0 0 57 65 55 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGLSGgGkr.PPS.ga...
8 8 A R - 0 0 249 65 46 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRPRKNN.RRK.KT...
9 9 A T - 0 0 131 68 62 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTSSSGTSSGNTVAITTTAAATIDR..
10 10 A S - 0 0 99 70 75 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSFAYGNAAKSSARNGKVV
11 11 A S + 0 0 42 70 80 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTTTTRQGVDGGVSSQVDRVRR
12 12 A S S S+ 0 0 67 70 62 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSGGINSSSTQQGTSKPTT
13 13 A Y S S+ 0 0 131 69 99 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYK.HYFGGESSSEFAGTT
14 14 A R S S+ 0 0 181 70 81 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRREPRAFGRRTTGGFHPQQ
15 15 A H S S+ 0 0 147 70 90 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHQHHHHHQHHHHHHHHKGQDSGGKEESSSEVAA
16 16 A D - 0 0 53 70 63 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDPERTSNEHHETTENTT
17 17 A E S > S+ 0 0 168 70 53 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEGESFSEEEQQRDSKEQQ
18 18 A K T 3 S+ 0 0 183 70 70 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKLRIFSRRRGGSQSKKQQ
19 19 A R T 3 S+ 0 0 153 70 5 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSRRRRRRRRR
20 20 A N S < S+ 0 0 71 70 74 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTSSTSSSTSSSSVV
21 21 A I S >> S+ 0 0 59 70 8 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIFIIIIIIIIIIIIIIIIIFFIIIIIII
22 22 A Y H 3> S+ 0 0 133 70 0 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY
23 23 A Q H 34 S+ 0 0 127 70 20 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQQKK
24 24 A K H X> S+ 0 0 139 70 21 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKRKNRRR
25 25 A I H >X S+ 0 0 107 70 27 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFILLIIFIFLL
26 26 A R H 3X S+ 0 0 179 70 11 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRRRRRRRRRRRRRRRRRRRRRRRRRRLWW
27 27 A D H <4 S+ 0 0 93 70 37 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEEDAAEDEEGGG
28 28 A H H X< S+ 0 0 145 70 64 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHYYVVVHYYYFVYYHH
29 29 A D H >X S+ 0 0 95 70 11 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDEDDEEE
30 30 A L T 3< S+ 0 0 114 70 22 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLILLIVIIIVLVLLL
31 31 A L T <4 S+ 0 0 110 70 20 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMKK
32 32 A D T <4 + 0 0 57 70 2 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDDDDD
33 33 A K S < S+ 0 0 200 70 9 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKRKRKKK
34 34 A R S S+ 0 0 241 70 23 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKKKRRRRRKKKKK
35 35 A K S S- 0 0 142 70 13 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKRRR
36 36 A T - 0 0 121 70 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37 37 A V - 0 0 120 70 46 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVDDVVVEEEE
38 38 A T + 0 0 117 70 0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
39 39 A A + 0 0 72 70 0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
40 40 A L S S- 0 0 175 70 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
41 41 A K - 0 0 184 70 11 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKKKRKKKRKRKKK
42 42 A A + 0 0 92 70 19 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAPAPPPAAAAAPAAAA
43 43 A G S S- 0 0 80 70 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
44 44 A E 0 0 187 70 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
45 45 A D 0 0 221 70 0 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 2 0 98 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66 0 0 0.079 2 0.99
2 2 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68 0 0 0.000 0 1.00
3 3 A 0 13 79 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 68 0 0 0.643 21 0.59
4 4 A 7 0 0 0 1 90 0 1 0 0 0 0 0 0 0 0 0 0 0 0 69 0 0 0.409 13 0.34
5 5 A 3 0 0 0 0 0 0 0 10 0 1 81 0 0 0 3 0 0 0 1 69 0 0 0.730 24 0.36
6 6 A 0 1 0 0 0 0 1 14 0 0 77 3 0 0 1 0 0 1 0 0 69 5 5 0.831 27 0.32
7 7 A 0 2 0 0 0 0 0 88 2 3 3 0 0 0 2 2 0 0 0 0 65 0 0 0.586 19 0.45
8 8 A 0 0 0 0 0 0 0 0 0 2 0 2 0 0 88 6 0 0 3 0 65 0 0 0.522 17 0.53
9 9 A 1 0 3 0 0 0 0 3 6 0 9 74 0 0 1 0 0 0 1 1 68 0 0 1.063 35 0.38
10 10 A 3 0 0 0 1 0 1 3 7 0 77 0 0 0 1 3 0 0 3 0 70 0 0 0.977 32 0.25
11 11 A 6 0 0 0 0 0 0 4 0 0 70 9 0 0 6 0 3 0 0 3 70 0 0 1.126 37 0.19
12 12 A 0 0 1 0 0 0 0 4 0 1 80 7 0 0 0 1 3 0 1 0 70 1 0 0.846 28 0.37
13 13 A 0 0 0 0 3 0 78 4 1 0 4 3 0 1 0 1 0 3 0 0 69 0 0 0.956 31 0.00
14 14 A 0 0 0 0 3 0 0 4 1 3 0 3 0 1 80 0 3 1 0 0 70 0 0 0.902 30 0.18
15 15 A 1 0 0 0 0 0 0 4 3 0 6 0 0 73 0 3 4 4 0 1 70 0 0 1.124 37 0.10
16 16 A 0 0 0 0 0 0 0 0 0 1 1 7 0 3 1 0 0 6 3 77 70 0 0 0.937 31 0.36
17 17 A 0 0 0 0 1 0 0 1 0 0 4 0 0 0 1 1 6 83 0 1 70 0 0 0.758 25 0.47
18 18 A 0 1 1 0 1 0 0 3 0 0 4 0 0 0 6 79 4 0 0 0 70 0 0 0.907 30 0.29
19 19 A 0 0 0 0 0 0 0 0 0 0 1 0 0 0 99 0 0 0 0 0 70 0 0 0.075 2 0.94
20 20 A 3 0 0 0 0 0 0 0 0 0 13 6 0 0 0 0 0 0 79 0 70 0 0 0.718 23 0.26
21 21 A 0 0 94 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.219 7 0.91
22 22 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
23 23 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 94 0 0 0 70 0 0 0.219 7 0.79
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 91 0 0 1 0 70 0 0 0.331 11 0.79
25 25 A 0 6 87 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.472 15 0.72
26 26 A 0 1 0 0 0 3 0 0 0 0 0 0 0 0 94 1 0 0 0 0 70 0 0 0.278 9 0.89
27 27 A 0 0 0 0 0 0 0 4 3 0 0 0 0 0 0 0 0 13 0 80 70 0 0 0.679 22 0.63
28 28 A 6 0 0 0 1 0 10 0 0 0 0 0 0 83 0 0 0 0 0 0 70 0 0 0.610 20 0.35
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 93 70 0 0 0.257 8 0.89
30 30 A 4 89 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.431 14 0.78
31 31 A 0 96 0 1 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 70 0 0 0.204 6 0.80
32 32 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 99 70 0 0 0.075 2 0.98
33 33 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 96 0 0 0 0 70 0 0 0.177 5 0.91
34 34 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89 11 0 0 0 0 70 0 0 0.355 11 0.76
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 94 0 0 0 0 70 0 0 0.219 7 0.86
36 36 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
37 37 A 91 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 3 70 0 0 0.347 11 0.53
38 38 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
39 39 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
40 40 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 94 0 0 0 0 70 0 0 0.219 7 0.89
42 42 A 0 0 0 0 0 0 0 0 93 7 0 0 0 0 0 0 0 0 0 0 70 0 0 0.257 8 0.81
43 43 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 70 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 70 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 70 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
56 7 7 3 rPRKg
58 7 7 1 gAk
59 7 42 1 gAr
65 6 57 2 eVSg
66 7 7 2 gRKa
//