Complet list of 1jli hssp file
Complete list of 1jli.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JLI
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER CYTOKINE 14-DEC-95 1JLI
COMPND MOL_ID: 1; MOLECULE: INTERLEUKIN 3; CHAIN: A; SYNONYM: MULTI-CSF; ENGI
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR Y.FENG,B.K.KLEIN,C.A.MCWHERTER
DBREF 1JLI A 15 125 UNP P08700 IL3_HUMAN 34 144
SEQLENGTH 112
NCHAIN 1 chain(s) in 1JLI data set
NALIGN 24
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : IL3_HUMAN 1JLI 0.88 0.91 2 112 34 144 111 0 0 152 P08700 Interleukin-3 OS=Homo sapiens GN=IL3 PE=1 SV=2
2 : G3QFG0_GORGO 0.87 0.91 2 112 34 144 111 0 0 152 G3QFG0 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101132913 PE=4 SV=1
3 : H2QRG0_PANTR 0.87 0.91 2 112 34 144 111 0 0 152 H2QRG0 Interleukin-3 OS=Pan troglodytes GN=IL3 PE=4 SV=1
4 : IL3_PANTR 0.87 0.91 2 112 34 144 111 0 0 152 Q28809 Interleukin-3 OS=Pan troglodytes GN=IL3 PE=2 SV=1
5 : Q6NZ78_HUMAN 0.87 0.91 2 112 34 144 111 0 0 152 Q6NZ78 Interleukin 3 (Colony-stimulating factor, multiple) OS=Homo sapiens GN=IL3 PE=2 SV=1
6 : Q6NZ79_HUMAN 0.87 0.91 2 112 34 144 111 0 0 152 Q6NZ79 Interleukin 3 (Colony-stimulating factor, multiple) OS=Homo sapiens GN=IL3 PE=2 SV=1
7 : Q8HZ83_9PRIM 0.86 0.90 2 101 5 104 100 0 0 104 Q8HZ83 Interleukin 3 (Fragment) OS=Gorilla gorilla PE=4 SV=1
8 : Q8HZ84_PANTR 0.86 0.90 2 101 5 104 100 0 0 104 Q8HZ84 Interleukin 3 (Fragment) OS=Pan troglodytes PE=4 SV=1
9 : H2PGH1_PONAB 0.84 0.89 2 112 34 144 111 0 0 152 H2PGH1 Uncharacterized protein OS=Pongo abelii GN=IL3 PE=4 SV=1
10 : G1RQ11_NOMLE 0.83 0.88 2 112 34 144 111 0 0 152 G1RQ11 Uncharacterized protein OS=Nomascus leucogenys GN=IL3 PE=4 SV=1
11 : IL3_HYLLA 0.83 0.88 2 112 34 144 111 0 0 152 P06740 Interleukin-3 OS=Hylobates lar GN=IL3 PE=2 SV=1
12 : Q8HZ82_PONPY 0.82 0.88 2 101 5 104 100 0 0 104 Q8HZ82 Interleukin 3 (Fragment) OS=Pongo pygmaeus PE=4 SV=1
13 : A9CB22_PAPAN 0.72 0.84 1 111 33 143 111 0 0 143 A9CB22 Interleukin-3 (Predicted) OS=Papio anubis GN=LOC706946 PE=4 SV=1
14 : G7MTY2_MACMU 0.72 0.84 1 111 33 143 111 0 0 143 G7MTY2 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_16827 PE=4 SV=1
15 : IL3_MACMU 0.72 0.84 1 111 33 143 111 0 0 143 P25140 Interleukin-3 OS=Macaca mulatta GN=IL3 PE=2 SV=1
16 : G7P877_MACFA 0.71 0.84 1 111 33 143 111 0 0 143 G7P877 Putative uncharacterized protein OS=Macaca fascicularis GN=EGM_15358 PE=4 SV=1
17 : B1MTP3_CALMO 0.64 0.75 2 111 35 144 110 0 0 144 B1MTP3 Interleukin-3 (Predicted) OS=Callicebus moloch GN=IL3 PE=4 SV=1
18 : IL3_SAGOE 0.62 0.76 2 111 33 142 110 0 0 142 P51445 Interleukin-3 OS=Saguinus oedipus GN=IL3 PE=2 SV=1
19 : B0KWQ3_CALJA 0.61 0.76 2 111 33 142 110 0 0 142 B0KWQ3 Interleukin-3 (Predicted) OS=Callithrix jacchus GN=MA_m002_jsm762B1f PE=4 SV=1
20 : IL3_CALJA 0.61 0.76 2 111 33 142 110 0 0 142 Q28334 Interleukin-3 OS=Callithrix jacchus GN=IL3 PE=2 SV=1
21 : F6W2Y4_CALJA 0.57 0.75 2 111 33 142 110 0 0 142 F6W2Y4 Interleukin-3 OS=Callithrix jacchus GN=IL3 PE=4 SV=1
22 : F6X9Z4_HORSE 0.40 0.60 6 107 33 133 103 2 3 135 F6X9Z4 Uncharacterized protein OS=Equus caballus GN=IL3 PE=4 SV=1
23 : M3YJF2_MUSPF 0.35 0.60 6 107 37 134 103 4 6 140 M3YJF2 Uncharacterized protein OS=Mustela putorius furo PE=4 SV=1
24 : IL3_CANFA 0.34 0.60 6 107 37 135 103 3 5 143 Q9BDX4 Interleukin-3 OS=Canis familiaris GN=IL3 PE=3 SV=1
## ALIGNMENTS 1 - 24
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 14 A A 0 0 139 5 0 AAAA
2 15 A N >> + 0 0 101 22 21 NNNNNNNNNNNNNKKKNNNNN
3 16 A a H 3> S+ 0 0 25 22 0 CCCCCCCCCCCCCCCCCCCCC
4 17 A S H >> S+ 0 0 51 22 0 SSSSSSSSSSSSSSSSSSSSS
5 18 A I H <> S+ 0 0 81 22 14 NNNNNNNNNNNNNNNNNNNNN
6 19 A M H 3X S+ 0 0 55 25 7 MMMMMMMMMMMMMMMMLLLLLLMM
7 20 A I H XX S+ 0 0 1 25 51 IIIIIIIIIIIIIIIIRRRRRIII
8 21 A D H 3X S+ 0 0 90 25 48 DDDDDDDDDDDDDDDDEEEEEKSN
9 22 A E H >X S+ 0 0 107 25 0 EEEEEEEEEEEEEEEEEEEEEEEE
10 23 A I H XX S+ 0 0 5 25 0 IIIIIIIIIIIIIIIIIIIIIIII
11 24 A I H >< S+ 0 0 27 25 29 IIIIIIIIIIIIIIIIVVVVVMIM
12 25 A H H << S+ 0 0 149 25 50 TTTTTTTTTTTTTTTTTTTTTKDE
13 26 A H H << S+ 0 0 133 25 85 HHHHHRHHHHHHHHHHLLLLLDIM
14 27 A L S << S+ 0 0 6 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
15 28 A K + 0 0 148 25 47 KKKKKKKKKKKKNNNNNNNNNNNN
16 29 A R + 0 0 213 25 52 QQQQQQQQQQQQQQQQQQQQQTSK
17 30 A P - 0 0 80 25 38 PPPPPPPPPPPPPPPPPPPPPTSS
18 31 A P - 0 0 87 24 0 PPPPPPPPPPPPPPPPPPPPPP.P
19 32 A N - 0 0 119 24 37 LLLLLLLLLLLLLLLLLLLLLL.S
20 33 A P + 0 0 129 25 18 PPPPPPPPPPPPPPPPPPAAAPPP
21 34 A L - 0 0 120 25 87 LLLLLLLLLLLLSSSSSSSSSPSS
22 35 A L + 0 0 168 25 100 LLLLLLLLLLLLPPPPSSSSSQPE
23 36 A D - 0 0 71 25 40 DDDDDDDDDDDDDDDDNNNNNDAE
24 37 A P S S+ 0 0 78 24 68 FFFFFFFFFFFFFFFFFFFFF.EP
25 38 A N + 0 0 12 24 40 NNNNNNNNNNNNNNNNNNNNN.EL
26 39 A N - 0 0 79 25 31 NNNNSNNNNNNNDNNNNNNNNNTD
27 40 A L - 0 0 21 25 23 LLLLLLLLLLLLLLLLLLLLLLLS
28 41 A N > - 0 0 113 25 9 NNNNNNNNNNNNNNNNNNNNNNDN
29 42 A S H > S+ 0 0 82 25 82 GGGGGGGGGGGGEEEERRRRKPPE
30 43 A E H > S+ 0 0 134 25 40 EEEEEEEEEEEEEEEEEEEENNNK
31 44 A D H > S+ 0 0 33 25 18 DDDDDDDDDDDDDDDDDDDDEEEE
32 45 A M H X S+ 0 0 94 25 66 QQQQQQQQQQQQQQQQQQQQKITT
33 46 A D H X S+ 0 0 78 24 76 DDDDDDDDDDDDTTTTRRRRTQN.
34 47 A I H >< S+ 0 0 9 24 21 IIIIIIIIIIIIIIIIIIIIVIT.
35 48 A L H 3< S+ 0 0 0 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
36 49 A M H 3< S+ 0 0 91 25 46 MMMMMMMMMMMMVVVVMMMMEGLL
37 50 A E S << S- 0 0 59 25 43 EEEEEEEEEEEEEEEEKKKKKENE
38 51 A R S > S+ 0 0 129 25 81 NNNNNNNNNNNNKKKKRPPPPTTD
39 52 A N T 3 S+ 0 0 14 25 42 NNNNNNNNNNNNNNNNNNNNNTTT
40 53 A L T 3> S+ 0 0 2 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
41 54 A R H <> S+ 0 0 3 25 62 RRRRRRRRRRRRRRRRRRRRRLLL
42 55 A T H > S+ 0 0 39 25 20 RRRRRRRRRRRRRRRRRRKKKRRR
43 56 A P H > S+ 0 0 26 25 20 PPPPPPPPPPPPSSSSPPPPPPPP
44 57 A N H X S+ 0 0 0 25 0 NNNNNNNNNNNNNNNNNNNNNNNN
45 58 A L H X S+ 0 0 0 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
46 59 A L H X S+ 0 0 108 25 31 EEEEEEEEEEEEEEEEEEEEEDND
47 60 A A H X S+ 0 0 23 25 15 AAAAAAAAAAAAAAAAAAAAAAAV
48 61 A F H X S+ 0 0 0 25 0 FFFFFFFFFFFFFFFFFFFFFFFF
49 62 A V H X S+ 0 0 27 25 98 NNNNNNNNNNNNSSSSQQQQQCLL
50 63 A R H >X S+ 0 0 202 25 46 RRRRRRRRKKKKKKKKKKKKKRNN
51 64 A A H >X S+ 0 0 13 25 7 AAAAAAAAAAAAAAAAVAAAAAAA
52 65 A V H 3< S+ 0 0 2 25 34 VVVVVVVVVVVVVVVVVVVVVVTS
53 66 A K H << S+ 0 0 121 25 30 KKKKKKKKKKKKKKKKKKKKKPKS
54 67 A H H << S+ 0 0 148 25 45 SSSSSSSSSSSSSSSSSSSSSSYK
55 68 A L S >< S- 0 0 4 25 9 LLLLLLLLLLLLLLLLLLLLLFFF
56 69 A E T 3 S+ 0 0 174 25 48 QQQQQQQQQQQQQQQQQQQQQKYH
57 70 A N T 3 S+ 0 0 144 25 35 NNNNNNNNNNNNNNNNNNNNNDSK
58 71 A A <> + 0 0 1 25 52 AAAAAAAAAAAAAAATAAAAARnn
59 72 A S H > S+ 0 0 67 25 61 SSSSSSSSSSSSSSSSSTAAAVsl
60 73 A A H > S+ 0 0 73 25 50 AAAAAAAAAAAAAAAAAAAAAQLL
61 74 A I H > S+ 0 0 15 25 0 IIIIIIIIIIIIIIIIIIIIIIII
62 75 A E H X S+ 0 0 37 25 71 EEEEEEEEEEEEEEEEEEEEEGWW
63 76 A S H X S+ 0 0 59 25 42 SSSSSSSSSSSSSSSSSSSSSKKN
64 77 A I H X S+ 0 0 35 25 81 IIIIIIIIIIIIIIIIISNNNNNN
65 78 A L H >X S+ 0 0 1 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
66 79 A K H >< S+ 0 0 103 25 7 KKKKKKKKKKKKKKKKTKKKKKKK
67 80 A N H 3< S+ 0 0 97 25 45 NNNNNNNNNNNNNNNNDDDDDEEE
68 81 A L H X< S+ 0 0 0 25 7 LLLLLLLLLLLLLLLLLLLLLLFF
69 82 A L G X< S+ 0 0 35 25 73 LLLLLLLLPPPPPPPPPPPPPQLL
70 83 A P G 3 S+ 0 0 110 25 54 PPPPPPPPPPPPPPPPLLVVVSPP
71 84 A a G < S+ 0 0 42 25 58 CCCCCCCCCCCCCCCCCCCCCYLL
72 85 A L S < S- 0 0 17 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
73 86 A P - 0 0 43 25 0 PPPPPPPPPPPPPPPPPPPPPPPP
74 87 A L > + 0 0 100 25 70 LLLLLLLLMMMMMMMMTMTTTTTT
75 88 A A T 3 S+ 0 0 67 25 32 AAAAAAAAAAAAAAAAAAAAAPPP
76 89 A T T 3 S- 0 0 101 25 16 TTTTTTTTTTTTTTTTTTTTTMTT
77 90 A A S < S+ 0 0 70 25 63 AAAAAAAAAAAAAAAADNNNNPPP
78 91 A A S S- 0 0 44 24 44 AAAAAAAAAAAAAAAAAAAAAM.R
79 92 A P - 0 0 99 24 53 PPPPPPPPPPPPPPPPPSAAAT.G
80 93 A T + 0 0 118 25 62 TTTTTTTTMTTMTTTTMMTTTDME
81 94 A R S S- 0 0 116 25 63 RRRRRRRRRRRRRRRRQQQQQWGP
82 95 A H - 0 0 167 25 63 HHHHHHHHHHHHPPPPHHHHHEEI
83 96 A P - 0 0 54 25 26 PPPPPPPPPPPPPPPPPPPPPrPS
84 97 A I - 0 0 11 23 0 IIIIIIIIIIIIIIIIIIIIIi..
85 98 A H - 0 0 127 24 56 HRRRHHRRRRRRRRRRRRRRRSI.
86 99 A I - 0 0 9 25 18 IIIIIIIIIIIIIIIIIIIIIISI
87 100 A K - 0 0 58 25 54 KKKKKKKKKKKKTTTTKKKKKKIM
88 101 A D S S- 0 0 116 25 40 DDDDDDDDDDDDNNNNDDDDDKGE
89 102 A G S S+ 0 0 12 25 33 GGGGGGGGGGGGGGGGGGGGGDNN
90 103 A D >> - 0 0 56 25 32 DDDDDDDDDDDDDDDDDDDDDSNN
91 104 A W H 3> S+ 0 0 67 25 1 WWWWWWWWWWWWRRRRWWWWWWWW
92 105 A N H 3> S+ 0 0 20 25 38 NNNNNNNNNNNNNNNNNNNNNGSG
93 106 A E H <> S+ 0 0 2 25 21 EEEEEEEEEEEEDDDDDDDDDDDD
94 107 A F H X>S+ 0 0 2 25 0 FFFFFFFFFFFFFFFFFFFFFFFF
95 108 A R H X5S+ 0 0 60 25 46 RRRRRRRRRRRRRRRRRRQQQQQQ
96 109 A R H X5S+ 0 0 93 25 49 RRRRRRRRRRRRRRRRMMMMMKKR
97 110 A K H X5S+ 0 0 2 25 0 KKKKKKKKKKKKKKKKKKKKKKKK
98 111 A L H X>S+ 0 0 0 25 0 LLLLLLLLLLLLLLLLLLLLLLLL
99 112 A T H X