Complet list of 1jjz hssp file
Complete list of 1jjz.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JJZ
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER PLANT PROTEIN 10-JUL-01 1JJZ
COMPND MOL_ID: 1; MOLECULE: KALATA B1; CHAIN: A
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: OLDENLANDIA AFFINIS; ORGANISM_TAXID: 6
AUTHOR L.SKJELDAL,L.GRAN,K.SLETTEN,B.F.VOLKMAN
DBREF 1JJZ A 8 15 UNP P56254 KAB1_OLDAF 22 29
DBREF 1JJZ A 16 36 UNP P56254 KAB1_OLDAF 1 21
SEQLENGTH 29
NCHAIN 1 chain(s) in 1JJZ data set
NALIGN 71
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : B5B3Z3_9ROSI 1.00 1.00 2 29 67 94 28 0 0 153 B5B3Z3 Cyclotide 6b OS=Viola baoshanensis PE=2 SV=1
2 : B5B3Z7_9ROSI 1.00 1.00 2 29 121 148 28 0 0 207 B5B3Z7 Cyclotide 7c OS=Viola baoshanensis PE=2 SV=1
3 : B6E615_VIOOD 1.00 1.00 2 29 121 148 28 0 0 207 B6E615 Cycloviolacin O8 OS=Viola odorata PE=4 SV=1
4 : KAB4_OLDAF 1ZNU 1.00 1.00 2 29 1 28 28 0 0 29 P83938 Kalata-B4 OS=Oldenlandia affinis PE=1 SV=2
5 : VARA_VIOOD 1WN4 1.00 1.00 2 29 121 148 28 0 0 207 Q5USN7 Varv peptide A/Kalata-B1 OS=Viola odorata GN=Vok1 PE=1 SV=1
6 : B6E618_OLDAF 0.97 1.00 1 29 88 116 29 0 0 121 B6E618 Kalata B1 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
7 : D8WS41_OLDAF 0.97 1.00 1 29 70 98 29 0 0 106 D8WS41 Cyclotide Oak10 (Fragment) OS=Oldenlandia affinis GN=oak10 PE=2 SV=1
8 : KAB1_OLDAF 1ZNU 0.97 1.00 1 29 88 116 29 0 0 124 P56254 Kalata-B1 OS=Oldenlandia affinis GN=OAK1 PE=1 SV=3
9 : B5B3Z4_9ROSI 0.96 1.00 2 29 121 148 28 0 0 153 B5B3Z4 Cyclotide 6c OS=Viola baoshanensis PE=2 SV=1
10 : CYO22_VIOOD 0.96 1.00 2 29 1 28 28 0 0 29 P85185 Cycloviolacin-O22 OS=Viola odorata PE=1 SV=1
11 : KABS_OLDAF 0.96 1.00 2 29 1 28 28 0 0 29 P58458 Kalata-S OS=Oldenlandia affinis PE=1 SV=1
12 : M9T7B1_VIOOD 0.96 1.00 2 29 16 43 28 0 0 102 M9T7B1 Cyclotide C (Fragment) OS=Viola odorata GN=vocC PE=2 SV=1
13 : VARA_VIOAR 0.96 1.00 2 29 1 28 28 0 0 29 P58446 Varv peptide A OS=Viola arvensis PE=1 SV=1
14 : VARA_VIOBI 0.96 1.00 2 29 1 28 28 0 0 29 P85525 Cyclotide varv-A OS=Viola biflora PE=1 SV=1
15 : A5YRZ3_9ROSI 0.93 1.00 2 29 121 148 28 0 0 153 A5YRZ3 Cyclotide 6 OS=Viola baoshanensis PE=2 SV=1
16 : A5YRZ4_9ROSI 0.93 1.00 2 29 121 148 28 0 0 207 A5YRZ4 Cyclotide 7 OS=Viola baoshanensis PE=2 SV=1
17 : B5B3Z5_9ROSI 0.93 1.00 2 29 67 94 28 0 0 153 B5B3Z5 Cyclotide 6d OS=Viola baoshanensis PE=2 SV=1
18 : B5B3Z6_9ROSI 0.93 1.00 2 29 121 148 28 0 0 207 B5B3Z6 Cyclotide 7b OS=Viola baoshanensis PE=2 SV=1
19 : CYO12_VIOAR 0.93 1.00 2 29 1 28 28 0 0 29 P83835 Varv peptide E OS=Viola arvensis PE=1 SV=1
20 : CYO12_VIOOD 0.93 1.00 2 29 1 28 28 0 0 29 P83836 Cycloviolacin-O12 OS=Viola odorata PE=1 SV=1
21 : CYO21_VIOOD 0.89 0.93 2 29 1 28 28 0 0 29 P85184 Cycloviolacin-O21 OS=Viola odorata PE=1 SV=1
22 : CYVB_VIOBI 0.89 0.93 2 29 1 28 28 0 0 29 P85240 Cyclotide vibi-B OS=Viola biflora PE=1 SV=1
23 : VARC_VIOAR 0.89 1.00 2 29 1 28 28 0 0 29 P58448 Varv peptide C OS=Viola arvensis PE=1 SV=1
24 : VARD_VIOAR 0.89 1.00 2 29 1 28 28 0 0 29 P58449 Varv peptide D OS=Viola arvensis PE=1 SV=1
25 : CYH3_VIOHE 0.86 0.86 2 29 1 29 29 1 1 30 P85232 Cycloviolacin-H3 OS=Viola hederacea PE=1 SV=1
26 : CYVA_VIOBI 0.86 0.93 2 29 1 28 28 0 0 29 P85239 Cyclotide vibi-A OS=Viola biflora PE=1 SV=1
27 : CYVD_VIOBI 0.86 0.89 2 29 1 28 28 0 0 29 P85242 Cyclotide vibi-D OS=Viola biflora PE=1 SV=1
28 : KAB13_OLDAF 0.86 0.90 2 29 1 29 29 1 1 30 P85131 Kalata-B13 OS=Oldenlandia affinis PE=1 SV=1
29 : B6E621_OLDAF 0.83 0.97 1 29 66 94 29 0 0 210 B6E621 Kalata B2 protein OS=Oldenlandia affinis PE=4 SV=1
30 : CYO24_VIOOD 0.83 0.86 2 29 1 29 29 1 1 30 P85187 Cycloviolacin-O24 OS=Viola odorata PE=1 SV=1
31 : D8WS37_OLDAF 0.83 0.90 1 29 61 90 30 1 1 153 D8WS37 Cyclotide Oak6 (Fragment) OS=Oldenlandia affinis GN=oak6 PE=2 SV=1
32 : KAB10_OLDAF 0.83 0.90 2 29 1 29 29 1 1 30 P85128 Kalata-B10 OS=Oldenlandia affinis PE=1 SV=1
33 : KAB14_OLDAF 0.83 0.90 2 29 1 29 29 1 1 30 P85132 Kalata-B14 OS=Oldenlandia affinis PE=1 SV=1
34 : KAB2_OLDAF 1PT4 0.83 0.97 1 29 66 94 29 0 0 210 P58454 Kalata-B2 OS=Oldenlandia affinis GN=OAK4 PE=1 SV=1
35 : VARH_VIOAR 0.83 0.90 2 29 1 29 29 1 1 30 P58453 Varv peptide H OS=Viola arvensis PE=1 SV=1
36 : CYVC_VIOBI 0.82 0.89 2 29 1 28 28 0 0 29 P85241 Cyclotide vibi-C OS=Viola biflora PE=1 SV=1
37 : KAB11_OLDAF 0.82 0.93 2 29 1 28 28 0 0 29 P85129 Kalata-B11 OS=Oldenlandia affinis PE=1 SV=1
38 : B6E620_OLDAF 0.80 0.90 1 29 66 95 30 1 1 155 B6E620 Kalata B6 and kalata B3 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
39 : KAB3_OLDAF 1WN8 0.80 0.90 1 29 66 95 30 1 1 158 P58455 Kalata-B3/B6 OS=Oldenlandia affinis GN=OAK2 PE=1 SV=1
40 : D2WPK8_9ROSI 0.79 0.83 6 29 74 97 24 0 0 102 D2WPK8 Cyclotide E (Fragment) OS=Gloeospermum blakeanum PE=2 SV=1
41 : Q30CA6_9ROSI 0.79 0.83 6 29 1 24 24 0 0 35 Q30CA6 Cyclotide B (Fragment) OS=Hybanthus monopetalus PE=2 SV=1
42 : VARB_VIOAR 0.79 0.90 2 29 1 29 29 1 1 30 P58447 Varv peptide B OS=Viola arvensis PE=1 SV=1
43 : VARG_VIOAR 0.79 0.90 2 29 1 29 29 1 1 30 P58452 Varv peptide G OS=Viola arvensis PE=1 SV=1
44 : VHL2_VIOHE 2KUK 0.79 0.79 2 29 1 29 29 1 1 30 P85231 Leaf cyclotide 2 OS=Viola hederacea PE=1 SV=1
45 : CYO23_VIOOD 0.77 0.83 2 29 1 30 30 1 2 31 P85186 Cycloviolacin-O23 OS=Viola odorata PE=1 SV=1
46 : B6E619_OLDAF 0.76 0.83 1 29 75 103 29 0 0 107 B6E619 Kalata B7 protein (Fragment) OS=Oldenlandia affinis PE=4 SV=1
47 : KAB7_OLDAF 2M9O 0.76 0.83 1 29 75 103 29 0 0 111 P58457 Kalata-B7 OS=Oldenlandia affinis GN=OAK3 PE=1 SV=1
48 : A9P3R7_9ROSI 0.75 0.82 2 29 61 88 28 0 0 93 A9P3R7 Cyclotide protein Mra26 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
49 : KAB15_OLDAF 0.75 0.93 2 29 1 28 28 0 0 29 P85133 Kalata-B15 OS=Oldenlandia affinis PE=1 SV=1
50 : VARF_VIOAR 2K7G 0.75 0.89 2 29 1 28 28 0 0 29 P58451 Varv peptide F OS=Viola arvensis PE=1 SV=1
51 : VODN_VIOOD 0.75 0.82 2 29 1 28 28 0 0 29 P83838 Vodo peptide N OS=Viola odorata PE=1 SV=1
52 : KAB9_OLDAF 0.72 0.80 6 29 6 30 25 1 1 31 P85127 Kalata-B9 OS=Oldenlandia affinis PE=1 SV=1
53 : A9P3R3_9ROSI 0.71 0.83 6 29 66 89 24 0 0 94 A9P3R3 Cyclotide protein Mra25 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
54 : K9Y490_9POAL 0.69 0.76 1 29 50 78 29 0 0 78 K9Y490 Panitide L1 OS=Steinchisma laxum PE=4 SV=1
55 : K9Y572_9POAL 0.69 0.83 1 29 50 78 29 0 0 78 K9Y572 Panitide L6 OS=Steinchisma laxum PE=4 SV=1
56 : A9P3R4_9ROSI 0.68 0.79 2 29 61 88 28 0 0 93 A9P3R4 Cyclotide protein Mra24 (Fragment) OS=Melicytus ramiflorus PE=2 SV=1
57 : CYCM_CLITE 2LAM 0.64 0.79 2 29 25 52 28 0 0 127 P86899 Cyclotide cter-M OS=Clitoria ternatea PE=1 SV=1
58 : F8W671_CLITE2LAM 0.64 0.79 2 29 1 28 28 0 0 29 F8W671 Cyclotide Cter M OS=Clitoria ternatea PE=1 SV=1
59 : G1CWH2_CLITE 0.64 0.79 2 29 25 52 28 0 0 127 G1CWH2 Cyclotide cliotide T3 OS=Clitoria ternatea PE=2 SV=1
60 : I0B6F3_9GENT 0.64 0.76 6 29 46 70 25 1 1 78 I0B6F3 Cyclotide chassatide C4 OS=Chassalia chartacea PE=4 SV=1
61 : KAB8_OLDAF 2B38 0.64 0.76 6 29 6 30 25 1 1 31 P85175 Kalata-B8 OS=Oldenlandia affinis PE=1 SV=1
62 : Q30CA3_9ROSI 0.64 0.76 6 29 1 25 25 1 1 30 Q30CA3 Cyclotide A (Fragment) OS=Hybanthus calycinus PE=2 SV=1
63 : VODM_VIOOD 0.64 0.75 2 29 1 28 28 0 0 29 P83839 Vodo peptide M OS=Viola odorata PE=1 SV=1
64 : CYO16_VIOOD 0.62 0.75 6 29 4 27 24 0 0 29 P85179 Cycloviolacin-O16 OS=Viola odorata PE=1 SV=1
65 : G1CWH1_CLITE 0.62 0.79 6 29 34 57 24 0 0 132 G1CWH1 Cyclotide cliotide T2 OS=Clitoria ternatea PE=2 SV=1
66 : K9Y2Z0_9POAL 0.62 0.69 1 29 51 79 29 0 0 79 K9Y2Z0 Panitide L2 OS=Steinchisma laxum PE=4 SV=1
67 : CYO15_VIOOD 0.61 0.71 2 29 1 28 28 0 0 29 P85178 Cycloviolacin-O15 OS=Viola odorata PE=1 SV=1
68 : K9Y385_9POAL 0.58 0.75 6 29 66 89 24 0 0 89 K9Y385 Panitide L4 OS=Steinchisma laxum PE=4 SV=1
69 : CYCN_CLITE 0.57 0.75 2 29 1 28 28 0 0 29 P86900 Cyclotide cter-N OS=Clitoria ternatea PE=1 SV=1
70 : M7ZIA4_TRIUA 0.55 0.69 2 29 56 84 29 1 1 90 M7ZIA4 Uncharacterized protein OS=Triticum urartu GN=TRIUR3_26311 PE=4 SV=1
71 : CYO14_VIOOD 2GJ0 0.52 0.76 2 29 2 30 29 1 1 31 P85177 Cycloviolacin-O14 OS=Viola odorata PE=1 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 8 A N 0 0 149 14 44 KKK K K K KK KK NN N
2 9 A G + 0 0 45 62 16 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGG QQGGGG G QG GG
3 10 A L - 0 0 111 62 33 LLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLL LVLLLLHLVL LLHLLL A LL SY
4 11 A P S S+ 0 0 102 62 14 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPP PPPPPPPPPP PPPPPP P PV AE
5 12 A V + 0 0 103 62 48 VVVVVVVVVIVVVVIIIIIIVVIIVVVVVTVTVVVVVTT VVVTVVIVIV IITTTT I IP FL
6 13 A a - 0 0 28 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
7 14 A G S S+ 0 0 57 72 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
8 15 A E - 0 0 92 72 0 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
9 16 A T B -A 26 0A 71 72 15 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTTTTTTTTTTTTSTTTSTTTTTTTTTSTSTTTTT
10 17 A b + 0 0 2 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
11 18 A V S S+ 0 0 103 72 63 VVVVVVVVVVVVVVVVVVVVVFVVFFFFFFFFFFFAFFFVVFFFFTTVFTTVTVVLTTTFLVFFVVFLVA
12 19 A G S S- 0 0 80 72 84 GGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGFGGGKTGGTGLLGGLLLLLLLLLLTLVTTQLTLLL
13 20 A G S S+ 0 0 44 72 7 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGDGGGGGGGS
14 21 A T - 0 0 96 72 43 TTTTTTTTTTTTTTTTTTTTSTTSTTRTTTTTTTTSTTTKTTTTTTTKSTKTETTTTTTITtKKERKTTg
15 22 A c - 0 0 21 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCc
16 23 A N + 0 0 138 72 65 NNNNNNNNNNNNNNNNNNNNYNNNNNNNNNNNNNNYNNNNYNNYNYYYYYYYYYYYYYYFYYYYYYYYYN
17 24 A T > - 0 0 30 72 9 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVVVTTTTTTTTTTT
18 25 A P T 3 S- 0 0 118 72 26 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPNPQQPPAAPPPPPPPPATKVPPPPPPG
19 26 A G T 3 S+ 0 0 72 72 18 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDDDGGKQGGNGGDG
20 27 A c < - 0 0 23 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
21 28 A T - 0 0 59 72 56 TTTTTTTTSTSSSSSSSSSSTTSSISTASTASASSSSSSVASSTTTTTSSSTTRSTSSSSTSSSSRSRSQ
22 29 A b + 0 0 52 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
23 30 A S - 0 0 78 72 56 SSSSSSSSSSSSSSSSSSSSSSSSdSSdTddsdTeSTssSDddddSSTTSSnSQAKSSSnnASSDQSTTA
24 31 A W S S+ 0 0 138 72 26 WWWWWWWWWWWWWWWWWWWWWYWWwYYwWwwwwWwWDwwWWwwwwWWWWWWyWYYRWWWwyWWYWYYAAW
25 32 A P S S+ 0 0 77 72 14 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPRPPPPPPPPRPPPPPPGLP
26 33 A V B S-A 9 0A 59 72 19 VVVVVVVVVVVVVVVVVVVVVIVVVIIVIVVIVIVVIIIVVMVVIIIVIVVVIIIVIIITVVVIIIIIVV
27 34 A a - 0 0 0 72 0 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
28 35 A T 0 0 7 72 65 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTKKSSTTKKYTTYTTVVYMMMTTMTKKVKLLI
29 36 A R 0 0 167 72 25 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRHRRRRRRRRRKRRRRHRRRRRRKKRRKKKKRKRRKKRKKKK
## ALIGNMENTS 71 - 71
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 8 A N 0 0 149 14 44
2 9 A G + 0 0 45 62 16 S
3 10 A L - 0 0 111 62 33 I
4 11 A P S S+ 0 0 102 62 14 P
5 12 A V + 0 0 103 62 48 A
6 13 A a - 0 0 28 72 0 C
7 14 A G S S+ 0 0 57 72 0 G
8 15 A E - 0 0 92 72 0 E
9 16 A T B -A 26 0A 71 72 15 S
10 17 A b + 0 0 2 72 0 C
11 18 A V S S+ 0 0 103 72 63 F
12 19 A G S S- 0 0 80 72 84 K
13 20 A G S S+ 0 0 44 72 7 G
14 21 A T - 0 0 96 72 43 K
15 22 A c - 0 0 21 72 0 C
16 23 A N + 0 0 138 72 65 Y
17 24 A T > - 0 0 30 72 9 T
18 25 A P T 3 S- 0 0 118 72 26 P
19 26 A G T 3 S+ 0 0 72 72 18 G
20 27 A c < - 0 0 23 72 0 C
21 28 A T - 0 0 59 72 56 S
22 29 A b + 0 0 52 72 0 C
23 30 A S - 0 0 78 72 56 s
24 31 A W S S+ 0 0 138 72 26 y
25 32 A P S S+ 0 0 77 72 14 P
26 33 A V B S-A 9 0A 59 72 19 L
27 34 A a - 0 0 0 72 0 C
28 35 A T 0 0 7 72 65 A
29 36 A R 0 0 167 72 25 K
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 8 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 71 0 0 29 0 14 0 0 0.598 19 0.55
2 9 A 0 0 0 0 0 0 0 94 0 0 2 0 0 0 0 0 5 0 0 0 62 0 0 0.275 9 0.84
3 10 A 5 85 2 0 0 0 2 0 2 0 2 0 0 3 0 0 0 0 0 0 62 0 0 0.658 21 0.66
4 11 A 2 0 0 0 0 0 0 0 2 95 0 0 0 0 0 0 0 2 0 0 62 0 0 0.247 8 0.86
5 12 A 55 2 24 0 2 0 0 0 2 2 0 15 0 0 0 0 0 0 0 0 62 0 0 1.219 40 0.52
6 13 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
7 14 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
8 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 72 0 0 0.000 0 1.00
9 16 A 0 0 0 0 0 0 0 0 0 0 8 92 0 0 0 0 0 0 0 0 72 0 0 0.287 9 0.84
10 17 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
11 18 A 47 4 0 0 35 0 0 0 3 0 0 11 0 0 0 0 0 0 0 0 72 0 0 1.198 39 0.37
12 19 A 1 24 0 0 1 0 0 60 0 0 0 10 0 0 0 3 1 0 0 0 72 0 0 1.153 38 0.16
13 20 A 0 0 0 0 0 0 0 96 0 0 1 0 0 0 0 0 0 0 1 1 72 0 0 0.219 7 0.92
14 21 A 0 0 1 0 0 0 0 1 0 0 6 76 0 0 3 10 0 3 0 0 72 0 2 0.911 30 0.56
15 22 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
16 23 A 0 0 0 0 1 0 39 0 0 0 0 0 0 0 0 0 0 0 60 0 72 0 0 0.735 24 0.35
17 24 A 4 0 0 0 0 0 0 0 0 0 0 96 0 0 0 0 0 0 0 0 72 0 0 0.173 5 0.90
18 25 A 1 0 0 0 0 0 0 1 4 86 0 1 0 0 0 1 3 0 1 0 72 0 0 0.658 21 0.73
19 26 A 0 0 0 0 0 0 0 90 0 0 0 0 0 0 0 1 1 0 1 6 72 0 0 0.431 14 0.82
20 27 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
21 28 A 1 0 1 0 0 0 0 0 6 0 54 32 0 0 4 0 1 0 0 0 72 0 0 1.168 38 0.44
22 29 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
23 30 A 0 0 0 0 0 0 0 0 4 0 61 10 0 0 0 1 3 1 4 15 72 0 17 1.298 43 0.43
24 31 A 0 0 0 0 0 79 15 0 3 0 0 0 0 0 1 0 0 0 0 1 72 0 0 0.690 23 0.74
25 32 A 0 1 0 0 0 0 0 1 0 94 0 0 0 0 3 0 0 0 0 0 72 0 0 0.272 9 0.85
26 33 A 63 1 33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 72 0 0 0.838 27 0.80
27 34 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 72 0 0 0.000 0 1.00
28 35 A 4 3 1 6 0 0 4 0 1 0 4 67 0 0 0 10 0 0 0 0 72 0 0 1.273 42 0.34
29 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 3 76 21 0 0 0 0 72 0 0 0.632 21 0.75
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
25 23 23 1 dPw
28 23 23 1 dPw
30 23 23 1 dPw
31 24 84 1 dPw
32 23 23 1 sSw
33 23 23 1 dPw
35 23 23 1 eTw
38 24 89 1 sSw
39 24 89 1 sSw
42 23 23 1 dPw
43 23 23 1 dPw
44 23 23 1 dPw
45 23 23 2 dSSw
52 19 24 1 nTy
60 19 64 1 nPw
61 19 24 1 nKy
62 10 10 1 tRc
70 14 69 1 gGc
71 23 24 1 sKy
//