Complet list of 1jjr hssp file
Complete list of 1jjr.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JJR
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER DNA BINDING PROTEIN 09-JUL-01 1JJR
COMPND MOL_ID: 1; MOLECULE: THYROID AUTOANTIGEN; CHAIN: A; FRAGMENT: C-TERMIN
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: HOMO SAPIENS; ORGANISM_COMMON: HUMAN;
AUTHOR Z.ZHANG,Y.CHEN
DBREF 1JJR A 44 97 GB 339667 AAA61177 556 609
SEQLENGTH 54
NCHAIN 1 chain(s) in 1JJR data set
NALIGN 123
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : A6MJV9_CALJA 1.00 1.00 1 54 111 164 54 0 0 164 A6MJV9 ATP-dependent DNA helicase 2 subunit 1-like protein (Fragment) OS=Callithrix jacchus PE=2 SV=1
2 : B1AHC8_HUMAN 1.00 1.00 1 54 515 568 54 0 0 568 B1AHC8 X-ray repair complementing defective repair in Chinese hamster cells 6 (Ku autoantigen, 70kDa), isoform CRA_b OS=Homo sapiens GN=XRCC6 PE=2 SV=1
3 : B1AHC9_HUMAN 1.00 1.00 1 54 506 559 54 0 0 559 B1AHC9 X-ray repair cross-complementing protein 6 OS=Homo sapiens GN=XRCC6 PE=2 SV=1
4 : B2RDN9_HUMAN 1.00 1.00 1 54 556 609 54 0 0 609 B2RDN9 cDNA, FLJ96699, highly similar to Homo sapiens thyroid autoantigen 70kDa (Ku antigen) (G22P1), mRNA OS=Homo sapiens PE=2 SV=1
5 : B4DE32_HUMAN 1.00 1.00 1 54 506 559 54 0 0 559 B4DE32 cDNA FLJ53970, highly similar to ATP-dependent DNA helicase 2 subunit 1 (EC3.6.1.-) OS=Homo sapiens PE=2 SV=1
6 : B4E356_HUMAN 1.00 1.00 1 54 423 476 54 0 0 476 B4E356 cDNA FLJ54993, highly similar to ATP-dependent DNA helicase 2 subunit 1 (EC 3.6.1.-) OS=Homo sapiens PE=2 SV=1
7 : F5H1I8_HUMAN 1.00 1.00 1 54 423 476 54 0 0 476 F5H1I8 X-ray repair cross-complementing protein 6 OS=Homo sapiens GN=XRCC6 PE=2 SV=1
8 : F6XWI2_MACMU 1.00 1.00 1 54 555 608 54 0 0 608 F6XWI2 Uncharacterized protein OS=Macaca mulatta GN=XRCC6 PE=4 SV=1
9 : F7GQQ6_MACMU 1.00 1.00 1 54 506 559 54 0 0 559 F7GQQ6 Uncharacterized protein OS=Macaca mulatta GN=XRCC6 PE=4 SV=1
10 : G2HER7_PANTR 1.00 1.00 1 54 556 609 54 0 0 609 G2HER7 ATP-dependent DNA helicase 2 subunit 1 OS=Pan troglodytes GN=XRCC6 PE=2 SV=1
11 : G2HIF9_PANTR 1.00 1.00 1 54 556 609 54 0 0 609 G2HIF9 ATP-dependent DNA helicase 2 subunit 1 OS=Pan troglodytes PE=2 SV=1
12 : G3RIJ0_GORGO 1.00 1.00 1 54 561 614 54 0 0 614 G3RIJ0 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla GN=101128008 PE=4 SV=1
13 : H2P4K1_PONAB 1.00 1.00 1 54 502 555 54 0 0 555 H2P4K1 Uncharacterized protein OS=Pongo abelii GN=XRCC6 PE=4 SV=2
14 : H2R209_PANTR 1.00 1.00 1 54 521 574 54 0 0 574 H2R209 Uncharacterized protein OS=Pan troglodytes GN=XRCC6 PE=4 SV=1
15 : H2RC89_PANTR 1.00 1.00 1 54 555 608 54 0 0 608 H2RC89 Uncharacterized protein (Fragment) OS=Pan troglodytes PE=4 SV=1
16 : H9ET71_MACMU 1.00 1.00 1 54 556 609 54 0 0 609 H9ET71 X-ray repair cross-complementing protein 6 OS=Macaca mulatta GN=XRCC6 PE=2 SV=1
17 : H9KX03_CALJA 1.00 1.00 1 54 526 579 54 0 0 579 H9KX03 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=LOC100403387 PE=4 SV=1
18 : K7DH05_PANTR 1.00 1.00 1 54 556 609 54 0 0 609 K7DH05 X-ray repair complementing defective repair in Chinese hamster cells 6 OS=Pan troglodytes GN=XRCC6 PE=2 SV=1
19 : Q4R673_MACFA 1.00 1.00 1 54 556 609 54 0 0 609 Q4R673 Testis cDNA, clone: QtsA-19002, similar to human thyroid autoantigen 70kDa (Ku antigen) (G22P1), OS=Macaca fascicularis GN=EGM_02739 PE=2 SV=1
20 : Q4R829_MACFA 1.00 1.00 1 54 556 609 54 0 0 609 Q4R829 Testis cDNA clone: QtsA-13665, similar to human thyroid autoantigen 70kDa (Ku antigen) (G22P1), OS=Macaca fascicularis PE=2 SV=1
21 : Q5R4V8_PONAB 1.00 1.00 1 54 556 609 54 0 0 609 Q5R4V8 Putative uncharacterized protein DKFZp459H0114 OS=Pongo abelii GN=DKFZp459H0114 PE=2 SV=1
22 : Q6IC76_HUMAN 1.00 1.00 1 54 174 227 54 0 0 227 Q6IC76 G22P1 protein OS=Homo sapiens GN=G22P1 PE=2 SV=1
23 : U3E7E5_CALJA 1.00 1.00 1 54 553 606 54 0 0 606 U3E7E5 X-ray repair cross-complementing protein 6 OS=Callithrix jacchus GN=XRCC6 PE=2 SV=1
24 : U3FBT5_CALJA 1.00 1.00 1 54 556 609 54 0 0 609 U3FBT5 X-ray repair cross-complementing protein 6 OS=Callithrix jacchus GN=XRCC6 PE=2 SV=1
25 : XRCC6_HUMAN 1.00 1.00 1 54 556 609 54 0 0 609 P12956 X-ray repair cross-complementing protein 6 OS=Homo sapiens GN=XRCC6 PE=1 SV=2
26 : F7FZ25_CALJA 0.98 1.00 1 54 174 227 54 0 0 227 F7FZ25 Uncharacterized protein OS=Callithrix jacchus PE=4 SV=1
27 : F6YLU4_CALJA 0.96 1.00 1 54 423 476 54 0 0 476 F6YLU4 Uncharacterized protein (Fragment) OS=Callithrix jacchus GN=XRCC6 PE=4 SV=1
28 : F7I3M0_CALJA 0.96 1.00 1 54 174 227 54 0 0 227 F7I3M0 Uncharacterized protein OS=Callithrix jacchus GN=XRCC6 PE=4 SV=1
29 : G7N3Z5_MACMU 0.96 0.98 1 54 556 609 54 0 0 609 G7N3Z5 Putative uncharacterized protein OS=Macaca mulatta GN=EGK_03094 PE=4 SV=1
30 : F6PNM7_HORSE 0.89 0.94 1 53 555 607 53 0 0 608 F6PNM7 Uncharacterized protein OS=Equus caballus GN=XRCC6 PE=4 SV=1
31 : K9K2M5_HORSE 0.89 0.94 1 53 520 572 53 0 0 574 K9K2M5 ATP-dependent DNA helicase 2 subunit 1-like protein (Fragment) OS=Equus caballus PE=2 SV=1
32 : F7HXM5_CALJA 0.87 0.89 1 54 174 223 54 1 4 223 F7HXM5 Uncharacterized protein OS=Callithrix jacchus PE=4 SV=1
33 : H0WZA3_OTOGA 0.87 1.00 1 53 555 607 53 0 0 608 H0WZA3 Uncharacterized protein OS=Otolemur garnettii GN=XRCC6 PE=4 SV=1
34 : G3SIR7_GORGO 0.83 0.87 1 54 534 583 54 1 4 583 G3SIR7 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla PE=4 SV=1
35 : I3MDN8_SPETR 0.83 0.92 1 53 555 607 53 0 0 609 I3MDN8 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=XRCC6 PE=4 SV=1
36 : F1MMD5_BOVIN 0.81 0.91 1 53 558 610 53 0 0 612 F1MMD5 Uncharacterized protein OS=Bos taurus GN=XRCC6 PE=4 SV=2
37 : L8HTI6_9CETA 0.81 0.91 1 53 551 603 53 0 0 605 L8HTI6 X-ray repair cross-complementing protein 6 OS=Bos mutus GN=M91_08493 PE=4 SV=1
38 : W5PI72_SHEEP 0.81 0.91 1 53 512 564 53 0 0 565 W5PI72 Uncharacterized protein OS=Ovis aries PE=4 SV=1
39 : W5QAK6_SHEEP 0.81 0.91 1 53 558 610 53 0 0 612 W5QAK6 Uncharacterized protein (Fragment) OS=Ovis aries GN=XRCC6 PE=4 SV=1
40 : F1SRE0_PIG 0.80 0.91 1 54 553 606 54 0 0 606 F1SRE0 Uncharacterized protein OS=Sus scrofa GN=XRCC6 PE=4 SV=1
41 : G1SS22_RABIT 0.80 0.96 1 54 555 608 54 0 0 608 G1SS22 Uncharacterized protein OS=Oryctolagus cuniculus GN=XRCC6 PE=4 SV=1
42 : L9KNC2_TUPCH 0.80 0.98 1 54 555 608 54 0 0 609 L9KNC2 X-ray repair cross-complementing protein 6 OS=Tupaia chinensis GN=TREES_T100012008 PE=4 SV=1
43 : K9IYZ2_DESRO 0.79 0.92 1 53 555 607 53 0 0 609 K9IYZ2 Putative dna-binding subunit of a dna-dependent protein kinase ku70 autoantigen OS=Desmodus rotundus PE=2 SV=1
44 : M3WP86_FELCA 0.79 0.91 1 53 554 606 53 0 0 608 M3WP86 Uncharacterized protein OS=Felis catus GN=XRCC6 PE=4 SV=1
45 : H0V143_CAVPO 0.77 0.88 1 52 561 612 52 0 0 614 H0V143 Uncharacterized protein OS=Cavia porcellus GN=XRCC6 PE=4 SV=1
46 : E2RRK6_CANFA 0.76 0.91 1 54 554 607 54 0 0 608 E2RRK6 Uncharacterized protein OS=Canis familiaris GN=XRCC6 PE=4 SV=1
47 : G3IJJ1_CRIGR 0.76 0.91 1 54 554 607 54 0 0 608 G3IJJ1 ATP-dependent DNA helicase 2 subunit 1 OS=Cricetulus griseus GN=I79_024026 PE=4 SV=1
48 : G3T6P4_LOXAF 0.76 0.94 1 54 558 611 54 0 0 611 G3T6P4 Uncharacterized protein OS=Loxodonta africana GN=XRCC6 PE=4 SV=1
49 : L9KT43_TUPCH 0.76 0.93 1 54 389 442 54 0 0 443 L9KT43 X-ray repair cross-complementing protein 6 OS=Tupaia chinensis GN=TREES_T100014822 PE=4 SV=1
50 : Q9QVN9_CRIGR 0.76 0.89 1 54 554 607 54 0 0 608 Q9QVN9 KU70=DNA-dependent protein kinase 70 kDa DNA-binding subunit/DNA-PK Ku70 subunit OS=Cricetulus griseus PE=4 SV=1
51 : S7N1L0_MYOBR 0.76 0.96 1 54 554 607 54 0 0 607 S7N1L0 X-ray repair cross-complementing protein 6 OS=Myotis brandtii GN=D623_10013956 PE=4 SV=1
52 : S9YM94_9CETA 0.76 0.91 1 54 556 609 54 0 0 609 S9YM94 X-ray repair cross-complementing protein 6 OS=Camelus ferus GN=CB1_000168023 PE=4 SV=1
53 : K7GE42_PELSI 0.75 0.88 1 52 203 254 52 0 0 257 K7GE42 Uncharacterized protein OS=Pelodiscus sinensis PE=4 SV=1
54 : D2I285_AILME 0.74 0.93 1 54 529 582 54 0 0 582 D2I285 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_019481 PE=4 SV=1
55 : G1MAS4_AILME 0.74 0.93 1 54 554 607 54 0 0 607 G1MAS4 Uncharacterized protein OS=Ailuropoda melanoleuca GN=XRCC6 PE=4 SV=1
56 : G1NY13_MYOLU 0.74 0.94 1 54 554 607 54 0 0 607 G1NY13 Uncharacterized protein OS=Myotis lucifugus GN=XRCC6 PE=4 SV=1
57 : L9KWW0_TUPCH 0.74 0.93 1 54 458 511 54 0 0 512 L9KWW0 X-ray repair cross-complementing protein 6 OS=Tupaia chinensis GN=TREES_T100016919 PE=4 SV=1
58 : U6CRI9_NEOVI 0.74 0.94 1 54 554 607 54 0 0 607 U6CRI9 X-ray repair cross-complementing protein 6 OS=Neovison vison GN=XRCC6 PE=2 SV=1
59 : G5BH08_HETGA 0.73 0.87 1 52 304 355 52 0 0 358 G5BH08 ATP-dependent DNA helicase 2 subunit 1 OS=Heterocephalus glaber GN=GW7_10346 PE=4 SV=1
60 : G5BPQ1_HETGA 0.73 0.88 1 52 554 605 52 0 0 608 G5BPQ1 ATP-dependent DNA helicase 2 subunit 1 OS=Heterocephalus glaber GN=GW7_19439 PE=4 SV=1
61 : L5K8Y4_PTEAL 0.72 0.94 1 53 493 545 53 0 0 547 L5K8Y4 ATP-dependent DNA helicase 2 subunit 1 OS=Pteropus alecto GN=PAL_GLEAN10007223 PE=4 SV=1
62 : E9PT85_RAT 0.69 0.87 1 54 554 607 54 0 0 609 E9PT85 Protein Xrcc6 OS=Rattus norvegicus GN=Xrcc6 PE=4 SV=1
63 : G3WB04_SARHA 0.69 0.82 1 54 555 609 55 1 1 610 G3WB04 Uncharacterized protein OS=Sarcophilus harrisii GN=XRCC6 PE=4 SV=1
64 : M7BXF6_CHEMY 0.69 0.85 1 52 556 607 52 0 0 609 M7BXF6 X-ray repair cross-complementing protein 5 (Fragment) OS=Chelonia mydas GN=UY3_00904 PE=4 SV=1
65 : Q6AZ64_RAT 0.69 0.87 1 54 554 607 54 0 0 608 Q6AZ64 Protein Xrcc6 OS=Rattus norvegicus GN=Xrcc6 PE=2 SV=1
66 : Q8VIB1_RAT 0.69 0.87 1 54 554 607 54 0 0 609 Q8VIB1 G22p1 OS=Rattus norvegicus GN=Xrcc6 PE=2 SV=1
67 : XRCC6_MOUSE 0.69 0.85 1 54 554 607 54 0 0 608 P23475 X-ray repair cross-complementing protein 6 OS=Mus musculus GN=Xrcc6 PE=1 SV=5
68 : F6QFZ3_CALJA 0.68 0.74 2 54 506 554 53 1 4 554 F6QFZ3 Uncharacterized protein (Fragment) OS=Callithrix jacchus PE=4 SV=1
69 : F7ETX0_CALJA 0.67 0.71 3 54 171 215 52 1 7 215 F7ETX0 Uncharacterized protein (Fragment) OS=Callithrix jacchus PE=4 SV=1
70 : G3RRF9_GORGO 0.66 0.75 1 53 110 155 53 1 7 156 G3RRF9 Uncharacterized protein (Fragment) OS=Gorilla gorilla gorilla PE=4 SV=1
71 : G1KCX9_ANOCA 0.65 0.81 1 52 560 611 52 0 0 614 G1KCX9 Uncharacterized protein OS=Anolis carolinensis GN=XRCC6 PE=4 SV=1
72 : H9H703_MONDO 0.65 0.78 1 54 537 591 55 1 1 591 H9H703 Uncharacterized protein (Fragment) OS=Monodelphis domestica GN=XRCC6 PE=4 SV=1
73 : R7VY25_COLLI 0.65 0.85 1 54 548 601 54 0 0 602 R7VY25 ATP-dependent DNA helicase 2 subunit 1 (Fragment) OS=Columba livia GN=A306_00965 PE=4 SV=1
74 : F7GEQ8_ORNAN 0.64 0.85 1 53 360 412 53 0 0 414 F7GEQ8 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus GN=LOC100076555 PE=4 SV=1
75 : U3KBP9_FICAL 0.63 0.81 1 54 576 629 54 0 0 630 U3KBP9 Uncharacterized protein (Fragment) OS=Ficedula albicollis GN=XRCC6 PE=4 SV=1
76 : V8P268_OPHHA 0.61 0.80 1 46 131 176 46 0 0 189 V8P268 X-ray repair cross-complementing protein 5 (Fragment) OS=Ophiophagus hannah GN=XRCC6 PE=4 SV=1
77 : A8KC26_DANRE 0.60 0.87 1 52 556 608 53 1 1 610 A8KC26 Xrcc6 protein OS=Danio rerio GN=xrcc6 PE=2 SV=1
78 : E7FG57_DANRE 0.60 0.87 1 52 556 608 53 1 1 610 E7FG57 Uncharacterized protein OS=Danio rerio PE=4 SV=1
79 : F1QZ60_DANRE 0.60 0.87 1 52 556 608 53 1 1 610 F1QZ60 Uncharacterized protein OS=Danio rerio GN=xrcc6 PE=4 SV=1
80 : Q06IS3_DANRE 0.60 0.87 1 52 556 608 53 1 1 610 Q06IS3 Ku70 autoantigen OS=Danio rerio GN=xrcc6 PE=2 SV=1
81 : Q4S4B3_TETNG 0.60 0.88 1 49 531 580 50 1 1 580 Q4S4B3 Chromosome 2 SCAF14738, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00024253001 PE=4 SV=1
82 : W5N0L4_LEPOC 0.60 0.87 1 52 448 500 53 1 1 502 W5N0L4 Uncharacterized protein OS=Lepisosteus oculatus PE=4 SV=1
83 : Q6AZR6_XENLA 0.59 0.76 1 54 558 610 54 1 1 611 Q6AZR6 LOC398357 protein OS=Xenopus laevis GN=xrcc6 PE=2 SV=1
84 : Q9W626_XENLA 0.59 0.76 1 54 558 610 54 1 1 611 Q9W626 Ku70 autoantigen homologue (Fragment) OS=Xenopus laevis PE=2 SV=1
85 : U3I9T6_ANAPL 0.59 0.80 1 54 499 552 54 0 0 553 U3I9T6 Uncharacterized protein (Fragment) OS=Anas platyrhynchos GN=XRCC6 PE=4 SV=1
86 : V9KLQ0_CALMI 0.59 0.80 2 52 557 606 51 1 1 609 V9KLQ0 X-ray repair cross-complementing protein 5 OS=Callorhynchus milii PE=2 SV=1
87 : B5X1Q2_SALSA 0.58 0.87 1 52 555 607 53 1 1 609 B5X1Q2 ATP-dependent DNA helicase 2 subunit 1 OS=Salmo salar GN=KU70 PE=2 SV=1
88 : F1NED5_CHICK 0.58 0.83 1 52 569 620 52 0 0 623 F1NED5 X-ray repair cross-complementing protein 5 (Fragment) OS=Gallus gallus GN=XRCC6 PE=4 SV=2
89 : XRCC6_CHICK 0.58 0.83 1 52 578 629 52 0 0 632 O93257 X-ray repair cross-complementing protein 5 OS=Gallus gallus GN=XRCC6 PE=2 SV=1
90 : H0ZHX0_TAEGU 0.57 0.80 1 54 557 610 54 0 0 610 H0ZHX0 Uncharacterized protein OS=Taeniopygia guttata GN=XRCC6 PE=4 SV=1
91 : H2V3E5_TAKRU 0.57 0.83 1 52 559 611 53 1 1 613 H2V3E5 Uncharacterized protein OS=Takifugu rubripes GN=LOC101071100 PE=4 SV=1
92 : H2V3E6_TAKRU 0.57 0.83 1 52 576 628 53 1 1 630 H2V3E6 Uncharacterized protein (Fragment) OS=Takifugu rubripes GN=LOC101071100 PE=4 SV=1
93 : H3D5Y7_TETNG 0.57 0.87 1 52 540 592 53 1 1 594 H3D5Y7 Uncharacterized protein (Fragment) OS=Tetraodon nigroviridis PE=4 SV=1
94 : W5KJI9_ASTMX 0.57 0.87 1 52 556 608 53 1 1 609 W5KJI9 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
95 : G1NHT5_MELGA 0.56 0.77 1 52 567 618 52 0 0 621 G1NHT5 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=XRCC6 PE=4 SV=2
96 : G3URY6_MELGA 0.56 0.77 1 52 565 616 52 0 0 619 G3URY6 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=XRCC6 PE=4 SV=1
97 : H3AQW0_LATCH 0.56 0.77 1 52 557 607 52 1 1 610 H3AQW0 Uncharacterized protein OS=Latimeria chalumnae PE=4 SV=1
98 : E6ZGL6_DICLA 0.55 0.87 1 52 570 622 53 1 1 624 E6ZGL6 ATP-dependent DNA helicase 2 subunit 1 OS=Dicentrarchus labrax GN=XRCC6 PE=4 SV=1
99 : F7BBB7_XENTR 0.54 0.78 1 54 572 624 54 1 1 625 F7BBB7 Uncharacterized protein OS=Xenopus tropicalis GN=xrcc6 PE=4 SV=1
100 : F7E5D3_XENTR 0.54 0.78 1 54 558 610 54 1 1 611 F7E5D3 Uncharacterized protein OS=Xenopus tropicalis GN=xrcc6 PE=4 SV=1
101 : Q6DJB1_XENTR 0.54 0.78 1 54 558 610 54 1 1 611 Q6DJB1 Thyroid autoantigen 70kDa (Ku antigen) OS=Xenopus tropicalis GN=xrcc6 PE=2 SV=1
102 : G3NM92_GASAC 0.53 0.85 1 52 564 616 53 1 1 618 G3NM92 Uncharacterized protein (Fragment) OS=Gasterosteus aculeatus PE=4 SV=1
103 : M4A5I8_XIPMA 0.53 0.83 1 52 556 608 53 1 1 610 M4A5I8 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
104 : H2LAV8_ORYLA 0.51 0.85 1 52 178 230 53 1 1 232 H2LAV8 Uncharacterized protein OS=Oryzias latipes GN=LOC101159705 PE=4 SV=1
105 : H2LAW0_ORYLA 0.51 0.85 1 52 431 483 53 1 1 485 H2LAW0 Uncharacterized protein (Fragment) OS=Oryzias latipes GN=LOC101159705 PE=4 SV=1
106 : I3KUL9_ORENI 0.50 0.83 1 53 571 624 54 1 1 624 I3KUL9 Uncharacterized protein (Fragment) OS=Oreochromis niloticus GN=LOC100701153 PE=4 SV=1
107 : C3Z1F8_BRAFL 0.49 0.75 4 53 561 611 51 1 1 613 C3Z1F8 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_281658 PE=4 SV=1
108 : I3KUM0_ORENI 0.49 0.82 1 54 556 610 55 1 1 610 I3KUM0 Uncharacterized protein OS=Oreochromis niloticus GN=LOC100701153 PE=4 SV=1
109 : A7EBN1_SCLS1 0.42 0.60 3 50 593 640 48 0 0 645 A7EBN1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_02717 PE=4 SV=1
110 : G2Y6D4_BOTF4 0.42 0.62 3 54 597 648 52 0 0 649 G2Y6D4 BcKU70, protein involved in DNA reparation OS=Botryotinia fuckeliana (strain T4) GN=BofuT4_P111990.1 PE=4 SV=1
111 : K1WAB1_MARBU 0.42 0.69 4 48 605 649 45 0 0 657 K1WAB1 Putative ATP-dependent DNA helicase II subunit 1 OS=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) GN=MBM_07847 PE=4 SV=1
112 : M7TS17_BOTF1 0.42 0.62 3 54 597 648 52 0 0 649 M7TS17 Putative ku70 protein OS=Botryotinia fuckeliana (strain BcDW1) GN=BcDW1_4960 PE=4 SV=1
113 : F2STC0_TRIRC 0.41 0.70 9 52 601 644 44 0 0 646 F2STC0 Ku70/Ku80 beta-barrel domain-containing protein OS=Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) GN=TERG_05721 PE=4 SV=1
114 : B3SBI2_TRIAD 0.40 0.64 1 53 565 617 53 0 0 619 B3SBI2 Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_61626 PE=4 SV=1
115 : E4V2Y0_ARTGP 0.40 0.69 8 52 600 644 45 0 0 646 E4V2Y0 Ku70 protein OS=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) GN=MGYG_07362 PE=4 SV=1
116 : T1FUD3_HELRO 0.40 0.64 9 52 550 594 45 1 1 596 T1FUD3 Uncharacterized protein OS=Helobdella robusta GN=HELRODRAFT_192857 PE=4 SV=1
117 : K1R1F0_CRAGI 0.39 0.65 8 52 560 605 46 1 1 607 K1R1F0 ATP-dependent DNA helicase 2 subunit 1 OS=Crassostrea gigas GN=CGI_10005536 PE=4 SV=1
118 : R7QDZ0_CHOCR 0.39 0.63 1 54 668 721 54 0 0 729 R7QDZ0 Ku core domain, Ku70 family OS=Chondrus crispus GN=CHC_T00010267001 PE=4 SV=1
119 : G4VI70_SCHMA 0.38 0.67 4 54 556 607 52 1 1 608 G4VI70 Acylaminoacyl-peptidase (S09 family) OS=Schistosoma mansoni GN=Smp_211060 PE=4 SV=1
120 : H2KNU8_CLOSI 0.38 0.62 3 54 1195 1247 53 1 1 1249 H2KNU8 Acylaminoacyl-peptidase OS=Clonorchis sinensis GN=CLF_100798 PE=4 SV=1
121 : H2Y8Q5_CIOSA 0.38 0.65 1 52 184 235 52 0 0 236 H2Y8Q5 Uncharacterized protein OS=Ciona savignyi PE=4 SV=1
122 : U6IMA1_HYMMI 0.38 0.58 4 54 566 617 52 1 1 617 U6IMA1 X ray repair cross complementing protein 6 OS=Hymenolepis microstoma GN=HmN_000424300 PE=4 SV=1
123 : I0YW72_9CHLO 0.37 0.61 1 54 556 609 54 0 0 612 I0YW72 ATP-dependent DNA helicase ii OS=Coccomyxa subellipsoidea C-169 GN=COCSUDRAFT_42298 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 44 A K 0 0 226 109 21 KKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKQKKKKKKRKKKKKKKKKKKKKKKKKNNKKKKKKK K
2 45 A V + 0 0 66 111 41 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVMVVVVVVVLVVMVVVEMVMMMMVVTVMVLMVVVV M
3 46 A E - 0 0 140 116 20 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEVEEEEEQEEEEEEEEEEEK
4 47 A Y + 0 0 24 120 58 YYYYYYYYYYYYYYYYYYYYYYYYYYFFYVVYFYVLLLLLLFLLLLLVFLLVILLLFLLLLLLVLLLYYY
5 48 A S S S- 0 0 61 120 29 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSS
6 49 A E S > S+ 0 0 91 120 26 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEKEEEEEEEEAAEEEKKKEEKEEEEEE
7 50 A E H > S+ 0 0 93 120 35 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEEDEEEEEE
8 51 A E H > S+ 0 0 55 122 27 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEEDEEEEEEEEEEEE
9 52 A L H > S+ 0 0 0 124 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLPLLLLLLLLLLLLL
10 53 A K H X S+ 0 0 102 124 34 KKKKKKKKKKKKKKKKKKKKKKKKKKRRKKKKKKKKKKKKKKKKKRKKKKKRRRRKKKKKKKKRKKKKKK
11 54 A T H X S+ 0 0 65 124 70 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAAAAAAAAVAAAAAAAAASAAAAAVVADASDDATTA
12 55 A H H X>S+ 0 0 14 124 52 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLYHLLHHHN
13 56 A I H <5S+ 0 0 25 124 44 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIVVVVIVVVVAVFIVFVVIVVVIVAAVFFVFFFIII
14 57 A S H <5S+ 0 0 103 124 74 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSASSSSSSSSSTNATSASSKSSSSNTTSAEQAARSSS
15 58 A K H <5S- 0 0 136 124 41 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEKKKKKKKKKKRRKKKRKKKKQKKKKKKKKK
16 59 A G T <5S+ 0 0 54 124 6 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
17 60 A T > < + 0 0 33 124 24 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTMTTTTTTTTTTTTTTTTTTATM
18 61 A L T 3 S+ 0 0 4 124 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 62 A G T 3 S+ 0 0 32 124 24 GGGGGGGGGGGGGGGGGGGGGGGGGGGGVGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
20 63 A K S < S+ 0 0 162 124 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKN
21 64 A F S S- 0 0 49 124 12 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLLLLLLLLLLLLLLLLLLFLLLLLLLLLLFLLLFFF
22 65 A T > - 0 0 67 124 11 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
23 66 A V H > S+ 0 0 30 123 6 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVP.V
24 67 A P H > S+ 0 0 91 123 27 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPV.P
25 68 A M H >> S+ 0 0 69 123 65 MMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMMAATTTVVMMMMTVVTVTVMMVVVMMMAMVAATL.M
26 69 A L H 3X S+ 0 0 4 123 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLK.L
27 70 A K H 3X S+ 0 0 84 123 8 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKRRKE.K
28 71 A E H S+ 0 0 1 123 41 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCRV.
31 74 A R H <5S+ 0 0 193 123 44 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRWRLRRRRRRRRRRRRKRRKRRRRRRRRRRRKRRKKKAP.
32 75 A A H <5S+ 0 0 66 123 82 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAEEAAEVMMMMVAVVVVVAMVAVVVVVVVVVVVAVVAAAKT.
33 76 A Y H <5S- 0 0 21 123 56 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYHHYYYCCYCYYYHYYYHYYCCYYCYYYHSM.
34 77 A G T <5 + 0 0 59 123 39 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGWGGGGGGGGGGGGGGRGGGGGGGEGGGGGQGGGGGK.
35 78 A L < - 0 0 52 123 20 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLLLLLLLLLLLLLLLLLLE.
36 79 A K - 0 0 200 124 42 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQKKRKKRRRKRKRKKkKKKKRAA
37 80 A S - 0 0 27 115 61 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVVKG.GGGGGGGSGGGGSGSSGGGGGGSVGGGSnGSSS.CY
38 81 A G - 0 0 10 122 28 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGQG.GGGGGGGGGGGGGGGGGGGGGGEGGGGGGGGGG.RG
39 82 A L S S+ 0 0 160 121 87 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL.M.LLLLLMLMTLLLPVMPMLGLLMMLLLMPTGPPP.LL
40 83 A K S S- 0 0 174 121 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK.K.KKKKKKKKRKKKKKKKRKKKKRKKKKRKKKKKK.KK
41 84 A K S >> S+ 0 0 83 123 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK.KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
42 85 A Q H 3> S+ 0 0 145 123 28 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ.QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
43 86 A E H 3> S+ 0 0 97 124 10 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE
44 87 A L H <> S+ 0 0 0 124 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
45 88 A L H X S+ 0 0 19 124 30 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMLMLLLLMLLLLLLLMLLVLLLLLLLLLL
46 89 A E H X S+ 0 0 102 124 30 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDEDEADDDDDDDDNDDDDEDDDDDDDDDDDDEDDEEDEEE
47 90 A A H X S+ 0 0 18 123 51 AAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATAAVVVVAAAAMMIAAVAAAAVVAAAAATALVAAAAAV
48 91 A L H >< S+ 0 0 0 123 17 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLFLLLLLLLLLLL
49 92 A T H >< S+ 0 0 49 122 53 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSSTTSSITTS
50 93 A K H >< S+ 0 0 154 121 67 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKEEEEEKRQKEQKRRQRKREKKKQKQQKRQERRRKKE
51 94 A H T << S+ 0 0 95 120 45 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHYHHHHRHHHHHYHHHHHH
52 95 A F T < S+ 0 0 76 120 15 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFLFFLLLFLF
53 96 A Q < 0 0 101 88 49 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ QHQQQQQ QQQQQ QEQ EEEQQQ
54 97 A D 0 0 207 72 52 DDDDDDDDDDDDDDDDDDDDDDDDDDDDD D D DDE KKEEKDD NNDEN KK KKKDD
## ALIGNMENTS 71 - 123
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 44 A K 0 0 226 109 21 KRKKKKKKKKKRDDK KKKKRRKKKKEKDDDKKKKK K K R K K
2 45 A V + 0 0 66 111 41 ILVFVMVVVVAVVVIVLIIVVVALTTVAIIIVVVVV V Q G T E
3 46 A E - 0 0 140 116 20 EEEEEEEEEEEESSESEEEEEEEEEESESSSEGEEE EEE E E E DE A
4 47 A Y + 0 0 24 120 58 IVILVLIIIIVVIIVLMIIVVVVVIIFVIIIVALLLVLMMLM T LLFGLM
5 48 A S S S- 0 0 61 120 29 SSSSSSSSSSSSSSSSSSSSSSSSSSVPSSSATTTTTTDDSD S DSTTSA
6 49 A E S > S+ 0 0 91 120 26 EQKEKEEEEEEEEEEEEEEKEEEEEEEEEEEEAEEEEEKRNK E EEEELD
7 50 A E H > S+ 0 0 93 120 35 EEDQDEEEEEEEDDDEDDDDEEEEDDADDDDDDDDDADEEAE I LTEVKF
8 51 A E H > S+ 0 0 55 122 27 EEEDEMEEEEEGEESEESSEEEEESSDEDDDEEEEEDEEEQE DD DMEYNED
9 52 A L H > S+ 0 0 0 124 17 LLLLLVLLLLLLLLLVLLLLLLLLLLVLLLLLLLLLILLLLLIVIVVMCLILY
10 53 A K H X S+ 0 0 102 124 34 RKRRRRKKKKRRRRRRRRRRRRRRRRQRRRRRKRRKKKKSKSKKKEKLKRKQQ
11 54 A T H X S+ 0 0 65 124 70 NARDSNIIIIAATTSQGSSSAAAASSDASSSAAAAARANNVNAEAKKSEDEDG
12 55 A H H X>S+ 0 0 14 124 52 HHHHHHHHHHHHYYYHHYYHHHHHYYYHYYYHHHHHMHLLVLHYYEEMALAHL
13 56 A I H <5S+ 0 0 25 124 44 IAVVVVVVVVVLVVVVVVVVVVVVVVVVVVVAMVVVAVVVIVYAYAAFVYVFA
14 57 A S H <5S+ 0 0 103 124 74 KEQKQDAAAAQEKKQRQQQQQQQQQQRQEEDQQLLQQQASGSEQERENQSEEA
15 58 A K H <5S- 0 0 136 124 41 KKKKKKKKKKRKNNAKKNNKNNRKNNKNKKKNSNNNANNNSNKKKNEKSHNSK
16 59 A G T <5S+ 0 0 54 124 6 GGGGGGGGGGGGGGGDGGGGGGGGGGGGGGGGGGGNGNGGGGGGGGGGGGRGG
17 60 A T > < + 0 0 33 124 24 TTTTTTTTTTTTTTTSTTTTTTTTTTTTTTTTTTTTTTGGGGTLTKRTNETTT
18 61 A L T 3 S+ 0 0 4 124 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
19 62 A G T 3 S+ 0 0 32 124 24 GGGGGGGGGGAGGGGGGGGGGGAGGGGGGGGGGGGVGVEEGENSNNGGHKGTG
20 63 A K S < S+ 0 0 162 124 4 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKRKKKRKKK
21 64 A F S S- 0 0 49 124 12 LLLLFLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFFYFLLLLLLYLFLL
22 65 A T > - 0 0 67 124 11 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTKKTKTTTTTLTTTTK
23 66 A V H > S+ 0 0 30 123 6 VVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVIVVVVVVKIVVVV
24 67 A P H > S+ 0 0 91 123 27 PPPPPPPPPPPPPPPPPSSSPPPPSSPPPPPPPPPPPPTAPAANAPAAPPLPD
25 68 A M H >> S+ 0 0 69 123 65 VVVLVIVVVVVVAAAVVAAVVVVVAAMVVVVVVVVVVVDDEDVDVIVDVLQTE
26 69 A L H 3X S+ 0 0 4 123 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
27 70 A K H 3X S+ 0 0 84 123 8 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKQRRKKK
28 71 A E H S+ 0 0 1 123 41 CCCCCCCCCCCCCCCCCCCCCCCCCCSCCCCCCCCCCCLLMLLCLIVCILCIL
31 74 A R H <5S+ 0 0 193 123 44 RRRRRRKKKKKQRRRRKRRRKKKKRRKKRRRKKKKKKKLLHLTKIKKRKKKAK
32 75 A A H <5S+ 0 0 66 123 82 IVLTFIQQQQKQGGFQQHHFKKKQHHQQGGGRQQQQQQGATASTAKKASLEMA
33 76 A Y H <5S- 0 0 21 123 56 YCYFLYFFFFFLYYYYFYYLLLFFYYYFYYYFFFFFSFKKKKHAHLEHLLLLN
34 77 A G T <5 + 0 0 59 123 39 KGGGGKNNNNGGKKGGGGGRGGGGRRGGKKKGGGGGGGGGGGSDSNKGGNGNG
35 78 A L < - 0 0 52 123 20 LLLLLLIIIIVVLLLLVLLLFFVVLLLVLLLVIVVVVVLLLLLILIILLLVVL
36 79 A K - 0 0 200 124 42 TkKKRTrrrrrrKKRKkRRRrrrrRRRrKKKrkrrrkrNNSNPKPktNkvKkK
37 80 A S - 0 0 27 115 61 GsGGCGtttttt..S.tSSCttttSS.t...tttttttSSSSTCAtsEslSaL
38 81 A G - 0 0 10 122 28 GSGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGVVGGGAAAASQSGGRAGSST
39 82 A L S S+ 0 0 160 121 87 TTGGSGTTTTTTSSGGTGGSTTTTGGSTSSSTTTTTNTGGGGGGGTTGSTGNG
40 83 A K S S- 0 0 174 121 2 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
41 84 A K S >> S+ 0 0 83 123 0 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
42 85 A Q H 3> S+ 0 0 145 123 28 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAAAAAAAAAQSAAAD
43 86 A E H 3> S+ 0 0 97 124 10 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEDEDDDDDDDEDDDEDDE
44 87 A L H <> S+ 0 0 0 124 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLVLLLLLLLLLLLILILL
45 88 A L H X S+ 0 0 19 124 30 LLMLVLIIIIMIVVIMIIIVIIMIIIIIVVVIIMMIIIMVVVVVVIIVIVILI
46 89 A E H X S+ 0 0 102 124 30 DGDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEEEEEAEEDMEATAQ
47 90 A A H X S+ 0 0 18 123 51 VLAVA AAAAAAAAAAAAAAAAAAAAAASSSAAVVAAARRRRRARAAAKQSAR
48 91 A L H >< S+ 0 0 0 123 17 VLLLL LLLLLLLLLILLLLLLLLLLILLLLLLLLLILILVLVVVIIVIIIII
49 92 A T H >< S+ 0 0 49 122 53 TQTMT TTTTTTVVTSTTTTVVTVTTTTVVVISTTITIEE EEAENNEMNMIT
50 93 A K H >< S+ 0 0 154 121 67 NEEEE MMMM KEEEAAEEEAAAAEEKTEEEAESSAEAEQ QEAEEDDNKDDE
51 94 A H T << S+ 0 0 95 120 45 YHYHY QQQQ HYYYHQYYYQQRQYYHRYYYQRRRRHR W WHHHHHHHHYYH
52 95 A F T < S+ 0 0 76 120 15 FFFFF LLLL YFFFFLFFFMMLLFFFLFFFLLLLLFL V VFFFFFIFFYFI
53 96 A Q < 0 0 101 88 49 QNET KKN N KKK RQR E E N ATA DE
54 97 A D 0 0 207 72 52 KE E KKK K KKK S D D DEE TK
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 44 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 85 1 1 3 5 109 0 0 0.621 20 0.79
2 45 A 68 5 6 10 1 0 0 1 3 0 0 4 0 0 0 0 1 2 0 0 111 0 0 1.219 40 0.59
3 46 A 1 0 0 0 0 0 0 1 1 0 6 0 0 0 0 1 1 88 0 2 116 0 0 0.557 18 0.79
4 47 A 16 30 13 4 7 0 28 1 1 0 0 1 0 0 0 0 0 0 0 0 120 0 0 1.709 57 0.41
5 48 A 1 0 0 0 0 0 0 0 2 1 86 8 0 0 0 0 0 0 0 3 120 0 0 0.587 19 0.70
6 49 A 0 1 0 0 0 0 0 0 3 0 0 0 0 0 1 8 1 84 1 2 120 0 0 0.672 22 0.73
7 50 A 1 1 1 0 1 0 0 0 3 0 0 1 0 0 0 1 1 73 0 19 120 0 0 0.921 30 0.65
8 51 A 0 0 0 2 0 0 1 1 0 0 4 0 0 0 0 0 1 80 1 11 122 0 0 0.770 25 0.72
9 52 A 5 89 3 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 124 0 0 0.519 17 0.82
10 53 A 0 1 0 0 0 0 0 0 0 0 2 0 0 0 30 65 2 1 0 0 124 0 0 0.878 29 0.66
11 54 A 3 0 3 0 0 0 0 2 36 0 10 29 0 0 2 2 1 2 4 6 124 0 0 1.805 60 0.29
12 55 A 1 6 0 2 0 0 11 0 2 0 0 0 0 76 0 0 0 2 1 0 124 0 0 0.911 30 0.48
13 56 A 45 1 35 1 7 0 2 0 8 0 0 0 0 0 0 0 0 0 0 0 124 0 0 1.288 42 0.56
14 57 A 0 2 0 0 0 0 0 1 10 0 47 3 0 0 3 4 19 8 2 2 124 0 0 1.710 57 0.26
15 58 A 0 0 0 0 0 0 0 0 2 0 3 0 0 1 4 73 1 2 15 0 124 0 0 0.971 32 0.58
16 59 A 0 0 0 0 0 0 0 97 0 0 0 0 0 0 1 0 0 0 2 1 124 0 0 0.176 5 0.93
17 60 A 0 1 0 2 0 0 0 3 1 0 1 90 0 0 1 1 0 1 1 0 124 0 0 0.549 18 0.75
18 61 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124 0 0 0.000 0 1.00
19 62 A 2 0 0 0 0 0 0 88 2 0 1 1 0 1 0 1 0 2 2 0 124 0 0 0.606 20 0.75
20 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 97 0 0 2 0 124 0 0 0.165 5 0.95
21 64 A 0 62 0 0 36 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 124 0 0 0.730 24 0.88
22 65 A 0 1 0 0 0 0 0 0 0 0 0 96 0 0 0 3 0 0 0 0 124 1 0 0.189 6 0.88
23 66 A 97 0 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 123 0 0 0.177 5 0.94
24 67 A 1 1 0 0 0 0 0 0 5 87 4 1 0 0 0 0 0 0 1 1 123 0 0 0.594 19 0.73
25 68 A 34 2 2 39 0 0 0 0 10 0 0 7 0 0 0 0 1 2 0 4 123 0 0 1.533 51 0.34
26 69 A 0 98 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 123 0 0 0.094 3 0.97
27 70 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 94 1 1 0 0 123 0 0 0.264 8 0.92
28 71 A 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 2 71 0 24 123 1 0 0.801 26 0.75
29 72 A 4 0 7 2 4 2 2 0 75 0 0 2 3 0 0 0 0 0 0 0 122 0 0 1.065 35 0.42
30 73 A 2 6 2 1 0 0 0 0 0 0 1 0 88 0 1 0 0 0 0 0 123 0 0 0.552 18 0.59
31 74 A 0 3 1 0 0 1 0 0 2 1 0 1 0 1 64 26 1 0 0 0 123 0 0 1.048 34 0.55
32 75 A 18 2 2 5 2 0 0 5 36 0 2 3 0 3 1 6 13 3 0 0 123 0 0 2.064 68 0.18
33 76 A 0 8 0 1 13 0 59 0 1 0 2 0 6 7 0 3 0 1 1 0 123 0 0 1.459 48 0.43
34 77 A 0 0 0 0 0 1 0 79 0 0 2 0 0 0 3 7 1 1 6 1 123 0 0 0.877 29 0.60
35 78 A 12 79 7 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 123 0 0 0.728 24 0.79
36 79 A 1 0 0 0 0 0 0 0 2 2 1 2 0 0 25 64 1 0 3 0 124 9 26 1.084 36 0.58
37 80 A 3 2 0 0 0 0 1 23 2 0 45 18 3 0 0 1 0 1 1 0 115 0 0 1.528 50 0.39
38 81 A 2 0 0 0 0 0 0 84 4 0 4 2 0 0 2 0 2 1 0 0 122 1 0 0.714 23 0.71
39 82 A 1 40 0 7 0 0 0 17 0 5 7 21 0 0 0 0 0 0 2 0 121 0 0 1.625 54 0.13
40 83 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 97 0 0 0 0 121 0 0 0.145 4 0.97
41 84 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 123 0 0 0.000 0 1.00
42 85 A 0 0 0 0 0 0 0 0 10 0 1 0 0 0 0 0 89 0 0 1 123 0 0 0.412 13 0.72
43 86 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 89 0 11 124 0 0 0.353 11 0.90
44 87 A 1 98 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124 0 0 0.129 4 0.97
45 88 A 13 57 21 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 124 0 0 1.126 37 0.70
46 89 A 0 0 0 1 0 0 0 1 3 0 0 1 0 0 0 0 1 38 1 55 124 0 0 1.002 33 0.70
47 90 A 11 2 1 2 0 0 0 0 72 0 3 3 0 0 6 1 1 0 0 0 123 0 0 1.114 37 0.48
48 91 A 5 85 9 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 123 0 0 0.572 19 0.82
49 92 A 7 0 4 2 0 0 0 0 1 0 6 72 0 0 0 0 1 5 2 0 122 0 0 1.118 37 0.47
50 93 A 0 0 0 3 0 0 0 0 8 0 2 1 0 0 7 40 7 26 2 3 121 0 0 1.708 57 0.32
51 94 A 0 0 0 0 0 2 15 0 0 0 0 0 0 69 7 0 8 0 0 0 120 0 0 0.983 32 0.54
52 95 A 2 16 2 2 77 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 120 0 0 0.762 25 0.84
53 96 A 0 0 0 0 0 0 0 0 2 0 0 2 0 1 2 6 72 9 5 1 88 0 0 1.120 37 0.50
54 97 A 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 24 0 11 4 58 72 0 0 1.151 38 0.48
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
63 37 591 1 kTn
72 37 573 1 kPs
77 37 592 1 rTt
78 37 592 1 rTt
79 37 592 1 rTt
80 37 592 1 rTt
81 37 567 1 rTt
82 37 484 1 rTt
87 37 591 1 kVt
91 37 595 1 rTt
92 37 612 1 rTt
93 37 576 1 rTt
94 37 592 1 rTt
98 37 606 1 rTt
102 37 600 1 rTt
103 37 592 1 kTt
104 37 214 1 rTt
105 37 467 1 rTt
106 37 607 1 rTt
107 34 594 1 kVt
108 37 592 1 rTt
116 29 578 1 kSt
117 30 589 1 tAs
119 34 589 1 kIs
120 35 1229 1 vPl
122 34 599 1 kPa
//