Complet list of 1jei hssp file
Complete list of 1jei.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1JEI
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-05-02
HEADER MEMBRANE PROTEIN 18-JUN-01 1JEI
COMPND MOL_ID: 1; MOLECULE: EMERIN; CHAIN: A; FRAGMENT: LEM DOMAIN (RESIDUES
SOURCE MOL_ID: 1; SYNTHETIC: YES; OTHER_DETAILS: CHEMICAL SYNTHESIS
AUTHOR N.WOLFF,B.GILQUIN,K.COURCHAY,I.CALLEBAUT,S.ZINN-JUSTIN
DBREF 1JEI A 1 53 UNP P50402 EMD_HUMAN 2 54
SEQLENGTH 53
NCHAIN 1 chain(s) in 1JEI data set
NALIGN 98
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : EMD_HUMAN 1.00 1.00 1 53 2 54 53 0 0 254 P50402 Emerin OS=Homo sapiens GN=EMD PE=1 SV=1
2 : G1RVA1_NOMLE 1.00 1.00 1 53 2 54 53 0 0 254 G1RVA1 Uncharacterized protein OS=Nomascus leucogenys GN=EMD PE=4 SV=1
3 : G3R1T9_GORGO 1.00 1.00 1 53 2 54 53 0 0 254 G3R1T9 Uncharacterized protein OS=Gorilla gorilla gorilla GN=101136890 PE=4 SV=1
4 : H2PX83_PONAB 1.00 1.00 1 53 2 54 53 0 0 253 H2PX83 Uncharacterized protein OS=Pongo abelii GN=EMD PE=4 SV=1
5 : K6ZA08_PANTR 1.00 1.00 1 53 2 54 53 0 0 254 K6ZA08 Emerin OS=Pan troglodytes GN=EMD PE=2 SV=1
6 : A9CB58_PAPAN 0.91 1.00 1 53 2 54 53 0 0 258 A9CB58 Emerin (Predicted) OS=Papio anubis GN=EMD PE=4 SV=1
7 : F7GKI2_MACMU 0.91 1.00 1 53 2 54 53 0 0 258 F7GKI2 Uncharacterized protein OS=Macaca mulatta GN=EMD PE=4 SV=1
8 : H9EYA7_MACMU 0.91 1.00 1 53 2 54 53 0 0 248 H9EYA7 Emerin (Fragment) OS=Macaca mulatta GN=EMD PE=2 SV=1
9 : B0KWW4_CALJA 0.87 1.00 1 53 2 54 53 0 0 258 B0KWW4 Emerin (Predicted) OS=Callithrix jacchus GN=EMD PE=4 SV=1
10 : B1MTU9_CALMO 0.87 1.00 1 53 2 54 53 0 0 257 B1MTU9 Emerin (Predicted) OS=Callicebus moloch GN=EMD PE=4 SV=1
11 : B5FW91_OTOGA 0.87 0.98 1 53 2 54 53 0 0 256 B5FW91 Emd protein (Predicted) OS=Otolemur garnettii GN=EMD PE=4 SV=1
12 : F6T3F1_CALJA 0.87 1.00 1 53 2 54 53 0 0 255 F6T3F1 Uncharacterized protein OS=Callithrix jacchus GN=EMD PE=4 SV=1
13 : B7NZQ0_RABIT 0.85 0.98 1 53 2 54 53 0 0 256 B7NZQ0 Emerin (Predicted) OS=Oryctolagus cuniculus GN=EMD PE=4 SV=1
14 : I3MND9_SPETR 0.85 0.98 1 53 2 54 53 0 0 260 I3MND9 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=EMD PE=4 SV=1
15 : Q6PCU4_RAT 0.85 0.98 1 53 2 54 53 0 0 260 Q6PCU4 Emd protein OS=Rattus norvegicus GN=Emd PE=2 SV=1
16 : B2KIJ5_RHIFE 0.83 0.98 1 53 2 54 53 0 0 136 B2KIJ5 Emerin (Predicted) OS=Rhinolophus ferrumequinum GN=EMD PE=4 SV=1
17 : C3PT00_DASNO 0.83 0.96 1 53 2 54 53 0 0 228 C3PT00 Emd protein (Predicted) OS=Dasypus novemcinctus GN=EMD PE=4 SV=1
18 : D2I872_AILME 0.83 0.98 1 53 2 54 53 0 0 256 D2I872 Putative uncharacterized protein (Fragment) OS=Ailuropoda melanoleuca GN=PANDA_022242 PE=4 SV=1
19 : EMD_RAT 0.83 0.98 1 53 2 54 53 0 0 260 Q63190 Emerin OS=Rattus norvegicus GN=Emd PE=2 SV=1
20 : G1LKX5_AILME 0.83 0.98 1 53 2 54 53 0 0 260 G1LKX5 Uncharacterized protein OS=Ailuropoda melanoleuca GN=EMD PE=4 SV=1
21 : G1P472_MYOLU 0.83 0.98 1 53 2 54 53 0 0 257 G1P472 Uncharacterized protein OS=Myotis lucifugus GN=EMD PE=4 SV=1
22 : G3SXA5_LOXAF 0.83 0.96 1 53 2 54 53 0 0 242 G3SXA5 Uncharacterized protein OS=Loxodonta africana GN=EMD PE=4 SV=1
23 : J9P3Z7_CANFA 0.83 0.98 1 53 2 54 53 0 0 230 J9P3Z7 Uncharacterized protein OS=Canis familiaris GN=EMD PE=4 SV=1
24 : M1ES12_MUSPF 0.83 0.98 1 53 2 54 53 0 0 139 M1ES12 Emerin (Fragment) OS=Mustela putorius furo PE=2 SV=1
25 : M3WF13_FELCA 0.83 0.98 1 53 2 54 53 0 0 260 M3WF13 Uncharacterized protein OS=Felis catus GN=EMD PE=4 SV=1
26 : M3YCU9_MUSPF 0.83 0.98 1 53 2 54 53 0 0 260 M3YCU9 Uncharacterized protein OS=Mustela putorius furo GN=EMD PE=4 SV=1
27 : Q3SX08_BOVIN 0.83 0.98 1 53 2 54 53 0 0 261 Q3SX08 EMD protein OS=Bos taurus GN=EMD PE=2 SV=1
28 : Q6XZP8_BOVIN 0.83 0.98 1 53 2 54 53 0 0 260 Q6XZP8 Emerin OS=Bos taurus GN=EMD PE=2 SV=1
29 : B7FAU5_MOUSE 0.81 0.96 1 53 2 54 53 0 0 170 B7FAU5 Emerin OS=Mus musculus GN=Emd PE=4 SV=1
30 : EMD_MOUSE 0.81 0.96 1 53 2 54 53 0 0 259 O08579 Emerin OS=Mus musculus GN=Emd PE=1 SV=1
31 : H0UZ10_CAVPO 0.81 0.96 1 53 2 54 53 0 0 249 H0UZ10 Uncharacterized protein OS=Cavia porcellus GN=EMD PE=4 SV=1
32 : K9II00_DESRO 0.81 0.98 1 53 2 54 53 0 0 263 K9II00 Putative conserved plasma membrane protein OS=Desmodus rotundus PE=2 SV=1
33 : Q3THM8_MOUSE 0.81 0.96 1 53 2 54 53 0 0 158 Q3THM8 Emerin OS=Mus musculus GN=Emd PE=2 SV=1
34 : S9WII2_9CETA 0.77 0.98 1 53 2 54 53 0 0 161 S9WII2 Emerin OS=Camelus ferus GN=CB1_001506012 PE=4 SV=1
35 : H9H617_MONDO 0.60 0.85 1 53 2 54 53 0 0 268 H9H617 Uncharacterized protein OS=Monodelphis domestica GN=EMD PE=4 SV=2
36 : Q5HY57_HUMAN 0.57 0.70 1 47 2 48 47 0 0 219 Q5HY57 Emerin OS=Homo sapiens GN=EMD PE=4 SV=1
37 : G1KWW8_ANOCA 0.55 0.88 1 49 2 50 49 0 0 273 G1KWW8 Uncharacterized protein OS=Anolis carolinensis GN=EMD PE=4 SV=1
38 : T1E5V5_CROHD 0.55 0.87 1 53 2 54 53 0 0 277 T1E5V5 Emerin-like protein OS=Crotalus horridus PE=2 SV=1
39 : U3FZJ7_MICFL 0.55 0.87 1 53 2 54 53 0 0 278 U3FZJ7 Emerin-like protein OS=Micrurus fulvius PE=2 SV=1
40 : A8WGV3_XENTR 0.54 0.74 1 46 2 47 46 0 0 185 A8WGV3 LOC100127712 protein OS=Xenopus tropicalis GN=emd PE=2 SV=1
41 : F7D6N2_ORNAN 0.54 0.73 6 53 7 54 48 0 0 250 F7D6N2 Uncharacterized protein (Fragment) OS=Ornithorhynchus anatinus GN=EMD PE=4 SV=1
42 : F7DLA2_XENTR 0.54 0.74 1 46 23 68 46 0 0 207 F7DLA2 Uncharacterized protein (Fragment) OS=Xenopus tropicalis GN=emd PE=4 SV=1
43 : Q0P4X2_XENTR 0.54 0.74 1 46 23 68 46 0 0 206 Q0P4X2 LOC779487 protein (Fragment) OS=Xenopus tropicalis GN=LOC779487 PE=2 SV=1
44 : Q50EN5_XENLA 0.54 0.74 1 46 2 47 46 0 0 180 Q50EN5 Xemerin2 OS=Xenopus laevis GN=emd PE=2 SV=1
45 : B7ZPV1_XENLA 0.52 0.76 1 46 2 47 46 0 0 180 B7ZPV1 Xemd1 protein OS=Xenopus laevis GN=emd PE=2 SV=1
46 : F7GCL3_MACMU 0.51 0.70 1 47 2 48 47 0 0 223 F7GCL3 Uncharacterized protein OS=Macaca mulatta GN=EMD PE=4 SV=1
47 : W2SNJ8_NECAM 0.50 0.67 2 43 3 44 42 0 0 180 W2SNJ8 LEM domain protein (Fragment) OS=Necator americanus GN=NECAME_04946 PE=4 SV=1
48 : Q4RVS4_TETNG 0.49 0.70 4 50 106 152 47 0 0 159 Q4RVS4 Chromosome 9 SCAF14991, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00028192001 PE=4 SV=1
49 : H3C6L0_TETNG 0.48 0.70 6 51 1 46 46 0 0 165 H3C6L0 Uncharacterized protein OS=Tetraodon nigroviridis PE=4 SV=1
50 : Q4RVR8_TETNG 0.48 0.71 4 51 5 52 48 0 0 188 Q4RVR8 Chromosome 9 SCAF14991, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00028203001 PE=4 SV=1
51 : W5L3K5_ASTMX 0.48 0.66 8 51 9 52 44 0 0 166 W5L3K5 Uncharacterized protein OS=Astyanax mexicanus PE=4 SV=1
52 : E9QE49_DANRE 0.47 0.68 7 53 8 54 47 0 0 94 E9QE49 Uncharacterized protein OS=Danio rerio GN=emd PE=4 SV=1
53 : E9QFP7_DANRE 0.47 0.68 7 53 8 54 47 0 0 132 E9QFP7 Uncharacterized protein OS=Danio rerio GN=emd PE=4 SV=1
54 : E9QIK0_DANRE 0.47 0.68 7 53 8 54 47 0 0 134 E9QIK0 Uncharacterized protein OS=Danio rerio GN=emd PE=4 SV=1
55 : LAP2A_MOUSE 0.45 0.69 2 43 110 151 42 0 0 693 Q61033 Lamina-associated polypeptide 2, isoforms alpha/zeta OS=Mus musculus GN=Tmpo PE=1 SV=4
56 : LAP2B_MOUSE 0.45 0.69 2 43 110 151 42 0 0 452 Q61029 Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma OS=Mus musculus GN=Tmpo PE=1 SV=4
57 : LAP2_RAT 0.45 0.69 2 43 110 151 42 0 0 452 Q62733 Lamina-associated polypeptide 2, isoform beta OS=Rattus norvegicus GN=Tmpo PE=1 SV=3
58 : Q3TNH0_MOUSE 0.45 0.69 2 43 110 151 42 0 0 412 Q3TNH0 Putative uncharacterized protein OS=Mus musculus GN=Tmpo PE=2 SV=1
59 : Q3U7B3_MOUSE 0.45 0.69 2 43 110 151 42 0 0 452 Q3U7B3 Putative uncharacterized protein OS=Mus musculus GN=Tmpo PE=2 SV=1
60 : Q3UR33_MOUSE 0.45 0.69 2 43 110 151 42 0 0 452 Q3UR33 Putative uncharacterized protein OS=Mus musculus GN=Tmpo PE=2 SV=1
61 : Q78WP6_MOUSE 0.45 0.69 2 43 43 84 42 0 0 277 Q78WP6 Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Tmpo PE=2 SV=1
62 : R9PXU0_RAT 0.45 0.69 2 43 18 59 42 0 0 360 R9PXU0 Lamina-associated polypeptide 2, isoform beta (Fragment) OS=Rattus norvegicus GN=Tmpo PE=4 SV=1
63 : B0S5A4_DANRE 0.44 0.65 9 51 10 52 43 0 0 161 B0S5A4 Uncharacterized protein OS=Danio rerio GN=si:ch211-150o23.2 PE=4 SV=1
64 : V8NN61_OPHHA 0.44 0.67 2 49 103 150 48 0 0 404 V8NN61 Lamina-associated polypeptide 2, isoforms alpha/zeta (Fragment) OS=Ophiophagus hannah GN=Tmpo PE=4 SV=1
65 : E4WXM2_OIKDI 0.43 0.69 4 45 101 142 42 0 0 729 E4WXM2 Whole genome shotgun assembly, reference scaffold set, scaffold scaffold_4 OS=Oikopleura dioica GN=GSOID_T00011659001 PE=4 SV=1
66 : E4YGH5_OIKDI 0.43 0.69 4 45 101 142 42 0 0 729 E4YGH5 Whole genome shotgun assembly, allelic scaffold set, scaffold scaffoldA_250 OS=Oikopleura dioica GN=GSOID_T00024627001 PE=4 SV=1
67 : E9J005_SOLIN 0.43 0.57 4 45 4 45 42 0 0 824 E9J005 Putative uncharacterized protein (Fragment) OS=Solenopsis invicta GN=SINV_07462 PE=4 SV=1
68 : F7CPD9_HORSE 0.43 0.69 2 43 108 149 42 0 0 450 F7CPD9 Uncharacterized protein OS=Equus caballus GN=TMPO PE=4 SV=1
69 : G3I2N4_CRIGR 0.43 0.69 2 43 20 61 42 0 0 319 G3I2N4 Lamina-associated polypeptide 2, isoforms alpha/zeta OS=Cricetulus griseus GN=I79_017678 PE=4 SV=1
70 : G5B0Z8_HETGA 0.43 0.69 2 43 108 149 42 0 0 232 G5B0Z8 Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma OS=Heterocephalus glaber GN=GW7_17429 PE=4 SV=1
71 : G5B2K7_HETGA 0.43 0.69 2 43 19 60 42 0 0 598 G5B2K7 Lamina-associated polypeptide 2, isoform alpha (Fragment) OS=Heterocephalus glaber GN=GW7_08591 PE=4 SV=1
72 : I3MD17_SPETR 0.43 0.69 2 43 111 152 42 0 0 691 I3MD17 Uncharacterized protein OS=Spermophilus tridecemlineatus GN=TMPO PE=4 SV=1
73 : I7HJS1_MOUSE 0.43 0.68 1 47 2 48 47 0 0 223 I7HJS1 Emerin OS=Mus musculus GN=Emd PE=4 SV=1
74 : Q3U955_MOUSE 0.43 0.69 2 43 110 151 42 0 0 452 Q3U955 Putative uncharacterized protein OS=Mus musculus GN=Tmpo PE=2 SV=1
75 : C1C3V4_LITCT 0.42 0.77 1 52 2 53 52 0 0 280 C1C3V4 Emerin OS=Lithobates catesbeiana GN=EMD PE=2 SV=1
76 : D3YU56_MOUSE 0.42 0.63 4 46 11 53 43 0 0 940 D3YU56 Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=2 SV=1
77 : E9QP59_MOUSE 0.42 0.63 4 46 11 53 43 0 0 918 E9QP59 Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=2 SV=1
78 : F1LWZ8_RAT 0.42 0.63 4 46 13 55 43 0 0 914 F1LWZ8 Protein Lemd3 OS=Rattus norvegicus GN=Lemd3 PE=4 SV=2
79 : G1KBY2_ANOCA 0.42 0.58 6 53 13 60 48 0 0 821 G1KBY2 Uncharacterized protein (Fragment) OS=Anolis carolinensis GN=LEMD3 PE=4 SV=1
80 : G1SE16_RABIT 0.42 0.63 4 46 12 54 43 0 0 877 G1SE16 Uncharacterized protein (Fragment) OS=Oryctolagus cuniculus GN=LEMD3 PE=4 SV=1
81 : G3TIP7_LOXAF 0.42 0.63 4 46 11 53 43 0 0 923 G3TIP7 Uncharacterized protein OS=Loxodonta africana GN=LEMD3 PE=4 SV=1
82 : G3U260_LOXAF 0.42 0.63 4 46 11 53 43 0 0 905 G3U260 Uncharacterized protein OS=Loxodonta africana GN=LEMD3 PE=4 SV=1
83 : MAN1_MOUSE 0.42 0.63 4 46 11 53 43 0 0 921 Q9WU40 Inner nuclear membrane protein Man1 OS=Mus musculus GN=Lemd3 PE=1 SV=2
84 : U3KNB9_RABIT 0.42 0.63 4 46 13 55 43 0 0 877 U3KNB9 Uncharacterized protein OS=Oryctolagus cuniculus GN=LEMD3 PE=4 SV=1
85 : F7HUW9_CALJA 0.41 0.59 4 52 10 58 49 0 0 848 F7HUW9 Uncharacterized protein OS=Callithrix jacchus GN=LEMD3 PE=4 SV=1
86 : H2LMH9_ORYLA 0.41 0.71 3 51 4 52 49 0 0 177 H2LMH9 Uncharacterized protein OS=Oryzias latipes GN=LOC101156167 PE=4 SV=1
87 : M3ZQB6_XIPMA 0.41 0.70 8 53 9 54 46 0 0 72 M3ZQB6 Uncharacterized protein OS=Xiphophorus maculatus PE=4 SV=1
88 : J3S900_CROAD 0.40 0.67 2 49 103 150 48 0 0 446 J3S900 Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like OS=Crotalus adamanteus PE=2 SV=1
89 : V9L988_CALMI 0.40 0.60 2 49 2 49 48 0 0 237 V9L988 Lamina-associated polypeptide 2 isoform beta OS=Callorhynchus milii PE=2 SV=1
90 : F1NZS9_CHICK 0.39 0.63 2 50 98 146 49 0 0 446 F1NZS9 Uncharacterized protein OS=Gallus gallus GN=TMPO PE=4 SV=1
91 : G1NGA1_MELGA 0.39 0.63 2 50 20 68 49 0 0 368 G1NGA1 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=TMPO PE=4 SV=2
92 : G5E7W4_MELGA 0.39 0.63 2 50 20 68 49 0 0 179 G5E7W4 Uncharacterized protein (Fragment) OS=Meleagris gallopavo GN=TMPO PE=4 SV=1
93 : Q5ZKG7_CHICK 0.39 0.63 2 50 98 146 49 0 0 193 Q5ZKG7 Putative uncharacterized protein OS=Gallus gallus GN=RCJMB04_10o24 PE=2 SV=1
94 : Q5ZM54_CHICK 0.39 0.65 2 50 98 146 49 0 0 248 Q5ZM54 Putative uncharacterized protein (Fragment) OS=Gallus gallus GN=RCJMB04_3b18 PE=2 SV=1
95 : Q5ZMN6_CHICK 0.39 0.63 2 50 98 146 49 0 0 446 Q5ZMN6 Putative uncharacterized protein OS=Gallus gallus GN=RCJMB04_1i19 PE=2 SV=1
96 : G3NK35_GASAC 0.38 0.60 2 51 93 142 50 0 0 326 G3NK35 Uncharacterized protein OS=Gasterosteus aculeatus PE=4 SV=1
97 : S7N3X4_MYOBR 0.38 0.60 4 53 11 60 50 0 0 651 S7N3X4 Inner nuclear membrane protein Man1 OS=Myotis brandtii GN=D623_10022910 PE=4 SV=1
98 : W5NYJ7_SHEEP 0.38 0.60 4 53 10 59 50 0 0 856 W5NYJ7 Uncharacterized protein (Fragment) OS=Ovis aries GN=LEMD3 PE=4 SV=1
## ALIGNMENTS 1 - 70
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A D 0 0 138 48 14 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDEDDE EEEED
2 2 A N >> + 0 0 76 73 24 NNNNNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDNNEEEN NNNNDD DDDDDDDD D DDD
3 3 A Y T 34 S+ 0 0 64 74 68 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY YYYYYV VVVVVVVV I VVV
4 4 A A T 34 S+ 0 0 91 90 72 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAARAKKKK KKKKAAS T TTTTTTTT AAADTTT
5 5 A D T <4 S+ 0 0 140 90 80 DDDDDDDDGGVGVVVVVVVVVVVVVVAAVVLVVGRDGGGR RRRHDLA T EEEEEEEE EDDAEEE
6 6 A L < - 0 0 16 93 3 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLMMMLMMMMLLLMM LLLLLLLL LLLLLLL
7 7 A S > - 0 0 75 96 25 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTTTATTSTSSSSS SSSSSSSSSSS STTSTSS
8 8 A D H > S+ 0 0 87 98 29 DDDDDNNNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDDDDNDDNADDDDNNNNNNNN NNNDNNN
9 9 A T H > S+ 0 0 92 99 65 TTTTTTTTTTTTTTTAAATAAAAAAASSTTTATAQTNKKDHDDDDTSTEEQKKKEEEEEEEEEEDDSEEE
10 10 A E H > S+ 0 0 86 99 13 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEELEEEEEEEEEEEEEEEEEEEEEDEDDEEDD
11 11 A L H >X S+ 0 0 0 99 12 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLIIIIIIILLLLLLLLILIILLLL
12 12 A T H 3X S+ 0 0 47 99 94 TTTTTTTTAAAAAAAAVAAAAVAAAAAAAAAAAAITIIIIQIIIITRQRSGCCCLLLLLLLLRKIIRLLL
13 13 A T H 3< S+ 0 0 61 99 77 TTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAARTAAAETEEEEADKKKWQQQDDEDDDDELEKKTDED
14 14 A L H << S+ 0 0 34 99 82 LLLLLLLLVVVVVVVVVVVVVMVVVVVVVVVVVVMLRRRTLTTTTLELLLMLLLQQQQQQQQMQVVKQQQ
15 15 A L H < S+ 0 0 0 99 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
16 16 A R S < S+ 0 0 179 99 72 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKRKKKRTRRQQRTDDDDDDDVVVVVVVVDLRRRVVV
17 17 A R S S+ 0 0 140 99 63 RRRRRRRRQQQQQQQQQQQQQQQQQQQQQQQQQQLRKKKKLKKKKRKEKEDEEERRRRRRRRDRFFERRR
18 18 A Y S S- 0 0 40 99 13 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYCTCCCCYYYWYYYYYYYYYYYYYYYYYYYYY
19 19 A N - 0 0 103 99 49 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNSNNNNNNRGGGGGGGGGGGGGGGGGGGGGG
20 20 A I - 0 0 10 99 22 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIVIIIIIVIIIIIIIVVVVVVVVIVIIYVVV
21 21 A P S S+ 0 0 125 99 76 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPTQTTTTPNKKKKKKKNNNNNNNNKNRRPNNN
22 22 A H + 0 0 58 99 55 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHRHHHHHIHHHHHHHPPPPPPPPHPHHVPPP
23 23 A G + 0 0 45 99 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
24 24 A P - 0 0 92 99 3 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPWPPPPPPPPPPPPPPPPPPPPPPPPPPPPP
25 25 A V + 0 0 48 99 18 VVVVVVVVVVVVVVIVVVIVVVVVVVVVIIVVIVIVLLIIKIIIIVVVVVVIIIIIIIIIIIVIVVVIII
26 26 A V - 0 0 60 99 35 VVVVVVVVVVVVVVVVVVLVVVVVVVVVVVVVVVVVVVVVSVVVVVSVVVVVVVVVVVVVVVVVNNTVVV
27 27 A G S >> S+ 0 0 62 99 43 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGGGGGGGDGDDDEEEEGGGGGGGGDGPPQGGG
28 28 A S G >4 S+ 0 0 110 99 51 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSLTSSTSTTTTLTSSSTSSSTTTTTTTTSTQQTTTT
29 29 A T G 34 S+ 0 0 51 99 6 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
30 30 A R G X> S+ 0 0 63 99 7 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSRRRRRRRRRSRRRRRRRRRRRRRRRRRRRRRRRR
31 31 A R H S+ 0 0 82 99 26 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLRLLILLLLLLSLLLLLLLLLLLLLLLLLLVVILLL
33 33 A Y H <> S+ 0 0 22 99 12 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYGYYYYYYYYYGYYYYYYYYYYYYYYYYYYYYLYYY
34 34 A E H < S+ 0 0 17 99 39 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEEEEEEDEEEEEEEEEEEEEEEEEEHHVEEE
35 35 A K H >X S+ 0 0 86 99 16 KKKKKQQQKKKKKKKKKKKKKKKKKKKKKKKKKKKAKKKKKKKKKSKRRRKKKKKKKKKKKKKKKKKKKK
36 36 A K H 3X S+ 0 0 120 99 6 KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKDKKKKKKKKKDKKKKKKKKKKKKKKKKKKKKKKKK
37 37 A I H 3< S+ 0 0 11 99 28 IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIMVIILILLLLMLLLLLLLLLLLLLLLLLLIILLLL
38 38 A F H X4 S+ 0 0 91 99 80 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFYYYYYYYYYYYYLSSSRNNNLLLLLLLLRLRRKLLL
39 39 A E H >X>S+ 0 0 96 99 51 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEELEDEEEEEEEEEDKEEEEEEEKKKKKKKKEKEENKKK
40 40 A Y T 3<5S+ 0 0 25 99 67 YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYLYYYYYYYYYLLAAAAAAALLLLLLLLALAALLLL
41 41 A E T <45S+ 0 0 93 99 80 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEPEEEEEEEEEPRMMMMMMMRRRRRRRRIKQQMRRR
42 42 A T T <45S- 0 0 98 99 74 TTTTTTTTTTTTTTTTTTTTTTTTTTSSTTSTTTSKKTTRTRRRRKKSSSAAAAEEEEEEEEAEGGEEEE
43 43 A Q T <5S+ 0 0 110 99 49 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKEEESQSSSSKQEEEKKKKQQQQQQQQKPEEAQQQ
44 44 A R < + 0 0 128 84 74 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRERRRKRKKKKE EEEEKKK SSSSR
45 45 A R S S- 0 0 150 84 75 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRTDKITTTTTTTD KKKRTTT KQQQS
46 46 A R + 0 0 147 81 72 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKAPQQRKRRRRA WAAKKKK KE
47 47 A L - 0 0 113 68 62 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLFLLYY L L KAAVPPP PL
48 48 A S - 0 0 86 65 65 SSSSSSSSSSSSSSSSSSSSSSSSSSSSLLSSLSP SPP S KKTKSSS QS
49 49 A P + 0 0 101 65 52 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPA SSS P PPPRSSS PS
50 50 A P S S- 0 0 124 61 41 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPSPPG HP Q SPPPPPP Q
51 51 A S S S- 0 0 112 54 61 SSSSSGGGSSSSNNSNNNSNNNNNNNSSNNDNNNT GG K SSSDDD S
52 52 A S 0 0 92 48 55 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSG GE T KKK
53 53 A S 0 0 184 46 38 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS SS S TTT
## ALIGNMENTS 71 - 98
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....8....:....9....:....0....:....1....:....2....:....3....:....4
1 1 A D 0 0 138 48 14 D D
2 2 A N >> + 0 0 76 73 24 DDDDK DDDDDDDDE
3 3 A Y T 34 S+ 0 0 64 74 68 VVYVF F ITVVVVVVV
4 4 A A T 34 S+ 0 0 91 90 72 TTATKQQQ QQQQQQS AKTTTTTTTQQ
5 5 A D T <4 S+ 0 0 140 90 80 EEVENQQQ QQQQQQN EAEEEEEEDQQ
6 6 A L < - 0 0 16 93 3 LLLLLLLLLLLLLLLM LLLLLLLLLLL
7 7 A S > - 0 0 75 96 25 SSSSSSSSTSSSSSSS NTSSSSSSTSS
8 8 A D H > S+ 0 0 87 98 29 NNDNDDDDDDDDDDDADNDNNNNNNDDD
9 9 A T H > S+ 0 0 92 99 65 EETEAEEEEEEEEEEEAEEEEEEEEDEE
10 10 A E H > S+ 0 0 86 99 13 DEEQEEEEEEEEEEEEQEEDDDDDDDEE
11 11 A L H >X S+ 0 0 0 99 12 LLLLLLLLLLLLLLLIILLLLLLLLLLL
12 12 A T H 3X S+ 0 0 47 99 94 LLALIFFFFFFFFFFSSKKQQQQQQKFF
13 13 A T H 3< S+ 0 0 61 99 77 DDADKSSSSSSSSSSYDDEEEEEEEQSS
14 14 A L H << S+ 0 0 34 99 82 QQVQVQQQEQQQQQQLLQHQQQQQQQQQ
15 15 A L H < S+ 0 0 0 99 0 LLLLLLLLLLLLLLLLLLLLLLLLLLLL
16 16 A R S < S+ 0 0 179 99 72 VVRVRRRRRRRRRRRDTLMMTTMMMERR
17 17 A R S S+ 0 0 140 99 63 RKQRERRRRRRRRRREDRKKKKKKKKRR
18 18 A Y S S- 0 0 40 99 13 YYYYYYYYLYYYYYYHYYYYYYYYYHYY
19 19 A N - 0 0 103 99 49 GGNGGGGGGGGGGGGGGGGGGGGGGGGG
20 20 A I - 0 0 10 99 22 VVIVILLLFLLLLLLIIVIIIIIIIVLL
21 21 A P S S+ 0 0 125 99 76 NNPNNSSSSSSSSSSKKNTNNNNSNQSS
22 22 A H + 0 0 58 99 55 PPHPHPPPPPPPPPPHHPPPPPPPPPPP
23 23 A G + 0 0 45 99 0 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
24 24 A P - 0 0 92 99 3 PPPPPPPPPPPPPPPPPPPPPPPPPPPP
25 25 A V + 0 0 48 99 18 IIIIIVVVVVVVVVVVVIIIIIIIIVVV
26 26 A V - 0 0 60 99 35 VVVVLTTTTTTTTTTVVVVVVVVVVVTT
27 27 A G S >> S+ 0 0 62 99 43 GGDGDEEEEEEEEEEDNAAAAAAAAAEE
28 28 A S G >4 S+ 0 0 110 99 51 TTLTSSSSSSSSSSSSSTSTTTTTTSSS
29 29 A T G 34 S+ 0 0 51 99 6 TTDTTTTTTTTTTTTTTTTTTTTTTTTT
30 30 A R G X> S+ 0 0 63 99 7 RRSRRRRRRRRRRRRRRRRRRRRRRRRR
31 31 A R H S+ 0 0 82 99 26 LLALVVVVVVVVVVVLLLVLLLLLLLVV
33 33 A Y H <> S+ 0 0 22 99 12 YYVYYYYYYYYYYYYYYYYYYYYYYYYY
34 34 A E H < S+ 0 0 17 99 39 EEDEELLLLLLLLLLEEEEEEEEEEELL
35 35 A K H >X S+ 0 0 86 99 16 KKSKKKKKKKKKKKKRRKKKKKKKKKKK
36 36 A K H 3X S+ 0 0 120 99 6 KKDKKKKKKKKKKKKKKKKKKKKKKKKK
37 37 A I H 3< S+ 0 0 11 99 28 LLMLLLLLLLLLLLLLLLLLLLLLLLLL
38 38 A F H X4 S+ 0 0 91 99 80 LLYLVKKKKKKKKKKKKLLLLLLLLQKK
39 39 A E H >X>S+ 0 0 96 99 51 KKDKEKKKKKKKKKKEEKKKKKKKKKKK
40 40 A Y T 3<5S+ 0 0 25 99 67 LLLLFLLLLLLLLLLAALLLLLLLLLLL
41 41 A E T <45S+ 0 0 93 99 80 RRPRERRRRRRRRRRMMKMMMMMMMLRR
42 42 A T T <45S- 0 0 98 99 74 EEKEREEEEEEEEEEAAEGEEEEEEDEE
43 43 A Q T <5S+ 0 0 110 99 49 QQKQKEEEEEEEEEEKRPQQQQQQQQEE
44 44 A R < + 0 0 128 84 74 E KEEEEEEEEEGRKSGGGGGGGGEE
45 45 A R S S- 0 0 150 84 75 D KQQQRQQQQQMKTQPPPPPPPPQQ
46 46 A R + 0 0 147 81 72 A IQQQAQQQQQGQKESEEEEEEAQQ
47 47 A L - 0 0 113 68 62 L Y S VAPLVLLLLLLQQQ
48 48 A S - 0 0 86 65 65 P K RKSSPKKKKKKPQQ
49 49 A P + 0 0 101 65 52 S P PPSSPTTTTTTSHH
50 50 A P S S- 0 0 124 61 41 S R VSR PPPPPPPRR
51 51 A S S S- 0 0 112 54 61 E N SPK DSS
52 52 A S 0 0 92 48 55 A S G P GG
53 53 A S 0 0 184 46 38 S T GG
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 85 48 0 0 0.415 13 0.85
2 2 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 5 18 75 73 0 0 0.739 24 0.75
3 3 A 30 0 3 0 3 0 64 0 0 0 0 1 0 0 0 0 0 0 0 0 74 0 0 0.902 30 0.31
4 4 A 0 0 0 0 0 0 0 0 47 0 3 24 0 0 1 11 12 0 0 1 90 0 0 1.414 47 0.28
5 5 A 22 2 0 0 0 0 0 8 6 0 0 1 0 1 6 0 12 24 2 16 90 0 0 2.014 67 0.20
6 6 A 0 89 0 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 93 0 0 0.341 11 0.97
7 7 A 0 0 0 0 0 0 0 0 1 0 84 14 0 0 0 0 0 0 1 0 96 0 0 0.509 16 0.75
8 8 A 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 30 67 98 0 0 0.753 25 0.70
9 9 A 0 0 0 0 0 0 0 0 14 0 4 25 0 1 0 5 2 39 1 8 99 0 0 1.647 54 0.34
10 10 A 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 84 0 13 99 0 0 0.540 18 0.86
11 11 A 0 88 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.369 12 0.88
12 12 A 2 14 12 0 12 0 0 1 25 0 3 11 3 0 4 4 8 0 0 0 99 0 0 2.180 72 0.05
13 13 A 0 1 0 0 0 1 1 0 34 0 12 9 0 0 1 6 4 16 0 14 99 0 0 1.897 63 0.23
14 14 A 29 20 0 4 0 0 0 0 0 0 0 5 0 1 3 1 34 2 0 0 99 0 0 1.608 53 0.17
15 15 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.000 0 1.00
16 16 A 14 2 0 5 0 0 0 0 0 0 0 5 0 0 58 4 2 1 0 9 99 0 0 1.448 48 0.27
17 17 A 0 2 0 0 2 0 0 0 0 0 0 0 0 0 38 19 27 8 0 3 99 0 0 1.506 50 0.37
18 18 A 0 1 0 0 0 1 90 0 0 0 0 1 5 2 0 0 0 0 0 0 99 0 0 0.465 15 0.87
19 19 A 0 0 0 0 0 0 0 49 0 0 3 0 0 0 1 0 0 0 46 0 99 0 0 0.857 28 0.51
20 20 A 19 11 68 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.918 30 0.77
21 21 A 0 0 0 0 0 0 0 0 0 42 14 6 0 0 2 10 2 0 23 0 99 0 0 1.539 51 0.24
22 22 A 1 0 1 0 0 0 0 0 0 36 0 0 0 61 1 0 0 0 0 0 99 0 0 0.811 27 0.45
23 23 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 1 0 0 0 99 0 0 0 0 0 0 0 0 0 0 99 0 0 0.056 1 0.96
25 25 A 57 2 40 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 99 0 0 0.814 27 0.81
26 26 A 81 2 0 0 0 0 0 0 0 0 2 13 0 0 0 0 0 0 2 0 99 0 0 0.675 22 0.64
27 27 A 0 0 0 0 0 0 0 62 9 2 0 0 0 0 0 0 1 16 1 9 99 0 0 1.201 40 0.56
28 28 A 0 3 0 0 0 0 0 0 0 0 64 31 0 0 0 0 2 0 0 0 99 0 0 0.836 27 0.49
29 29 A 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 0 0 0 2 1 99 0 0 0.155 5 0.93
30 30 A 0 0 0 0 0 0 0 0 0 0 3 0 0 0 97 0 0 0 0 0 99 0 0 0.136 4 0.93
31 31 A 0 0 0 1 0 0 0 1 2 12 2 9 0 0 11 61 0 0 1 0 99 0 0 1.318 44 0.44
32 32 A 16 79 2 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 99 0 0 0.700 23 0.74
33 33 A 1 1 0 0 0 0 96 2 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.211 7 0.87
34 34 A 1 12 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 82 0 3 99 0 0 0.651 21 0.60
35 35 A 0 0 0 0 0 0 0 0 1 0 2 0 0 0 5 89 3 0 0 0 99 0 0 0.487 16 0.84
36 36 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 97 0 0 0 3 99 0 0 0.136 4 0.94
37 37 A 1 55 41 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 99 0 0 0.848 28 0.71
38 38 A 1 24 0 0 35 0 13 0 0 0 3 0 0 0 4 15 1 0 3 0 99 0 0 1.698 56 0.19
39 39 A 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 37 0 58 1 3 99 0 0 0.884 29 0.49
40 40 A 0 41 0 0 1 0 45 0 12 0 0 0 0 0 0 0 0 0 0 0 99 0 0 1.026 34 0.32
41 41 A 0 1 1 17 0 0 0 0 0 3 0 0 0 0 27 2 2 45 0 1 99 0 0 1.418 47 0.19
42 42 A 0 0 0 0 0 0 0 3 7 0 7 35 0 0 6 5 0 35 0 1 99 0 0 1.583 52 0.26
43 43 A 0 0 0 0 0 0 0 0 1 2 5 0 0 0 1 10 61 20 0 0 99 0 0 1.181 39 0.51
44 44 A 0 0 0 0 0 0 0 11 0 0 6 0 0 0 50 12 0 21 0 0 84 0 0 1.337 44 0.26
45 45 A 0 0 1 1 0 0 0 0 0 10 1 14 0 0 44 8 17 0 0 4 84 0 0 1.646 54 0.25
46 46 A 0 0 1 0 0 1 0 1 9 1 1 0 0 0 49 10 16 10 0 0 81 0 0 1.582 52 0.27
47 47 A 4 71 0 0 1 0 4 0 4 7 1 0 0 0 0 1 4 0 0 0 68 0 0 1.175 39 0.37
48 48 A 0 5 0 0 0 0 0 0 0 9 62 2 0 0 2 17 5 0 0 0 65 0 0 1.232 41 0.34
49 49 A 0 0 0 0 0 0 0 0 2 68 17 9 0 3 2 0 0 0 0 0 65 0 0 1.020 34 0.47
50 50 A 2 0 0 0 0 0 0 2 0 79 7 0 0 2 7 0 3 0 0 0 61 0 0 0.860 28 0.59
51 51 A 0 0 0 0 0 0 0 9 0 2 39 2 0 0 0 4 0 2 33 9 54 0 0 1.518 50 0.39
52 52 A 0 0 0 0 0 0 0 10 2 2 75 2 0 0 0 6 0 2 0 0 48 0 0 0.947 31 0.44
53 53 A 0 0 0 0 0 0 0 4 0 2 85 9 0 0 0 0 0 0 0 0 46 0 0 0.572 19 0.62
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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