Complet list of 1j7r hssp file
Complete list of 1j7r.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1J7R
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER METAL BINDING PROTEIN 18-MAY-01 1J7R
COMPND MOL_ID: 1; MOLECULE: CALCIUM VECTOR PROTEIN; CHAIN: A; FRAGMENT: N-TER
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; ORGANISM_CO
AUTHOR I.THERET,S.BALADI,J.A.COX,J.GALLAY,H.SAKAMOTO,C.T.CRAESCU
DBREF 1J7R A 1 86 UNP P04573 CAVP_BRALA 1 86
SEQLENGTH 77
NCHAIN 1 chain(s) in 1J7R data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CAVP_BRALA 1J7R 1.00 1.00 1 77 9 85 77 0 0 162 P04573 Calcium vector protein OS=Branchiostoma lanceolatum PE=1 SV=3
2 : G0Z388_BRABE 0.99 1.00 1 77 9 85 77 0 0 162 G0Z388 Calcium vector protein OS=Branchiostoma belcheri PE=2 SV=1
3 : C3YYW0_BRAFL 0.97 0.99 1 77 28 104 77 0 0 181 C3YYW0 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_123412 PE=4 SV=1
4 : CAVP_BRAFL 0.97 0.99 1 77 9 85 77 0 0 162 O01305 Calcium vector protein OS=Branchiostoma floridae PE=2 SV=3
5 : Q9NDR7_BRABE 0.96 0.97 1 77 14 90 77 0 0 167 Q9NDR7 Calcium vector protein OS=Branchiostoma belcheri GN=BbCAVP PE=2 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 8 A L > 0 0 144 6 0 LLLLL
2 9 A G G > - 0 0 41 6 0 GGGGG
3 10 A P G > S+ 0 0 124 6 0 PPPPP
4 11 A E G <> + 0 0 138 6 0 EEEEE
5 12 A E H <> S+ 0 0 19 6 0 EEEEE
6 13 A K H <> S+ 0 0 118 6 0 KKKKK
7 14 A D H > S+ 0 0 74 6 0 DDDDD
8 15 A E H X S+ 0 0 59 6 0 EEEEE
9 16 A C H X S+ 0 0 2 6 0 CCCCC
10 17 A M H < S+ 0 0 76 6 0 MMMMM
11 18 A K H >X S+ 0 0 78 6 0 KKKKK
12 19 A I H 3X>S+ 0 0 2 6 0 IIIII
13 20 A F H 3<5S+ 0 0 13 6 0 FFFFF
14 21 A D H <45S+ 0 0 96 6 0 DDDDD
15 22 A I H ><5S+ 0 0 109 6 0 IIIII
16 23 A F T 3<5S+ 0 0 22 6 0 FFFFF
17 24 A D T 3>XS- 0 0 7 6 0 DDDDD
18 25 A R T <45 - 0 0 98 6 0 RRRRR
19 26 A N T 45S+ 0 0 132 6 0 NNNNN
20 27 A A T 45S+ 0 0 77 6 0 AAAAA
21 28 A E T <5 - 0 0 74 6 0 EEEEE
22 29 A N < + 0 0 62 6 0 NNNNN
23 30 A I + 0 0 72 6 0 IIIII
24 31 A A B -A 62 0A 0 6 0 AAAAA
25 32 A P > - 0 0 23 6 0 PPPPP
26 33 A V H > S+ 0 0 43 6 0 VVVVV
27 34 A S H > S+ 0 0 65 6 0 SSSSS
28 35 A D H > S+ 0 0 20 6 0 DDDDD
29 36 A T H X S+ 0 0 0 6 0 TTTTT
30 37 A M H X S+ 0 0 78 6 0 MMMMM
31 38 A D H X>S+ 0 0 74 6 0 DDDDD
32 39 A M I X>S+ 0 0 0 6 0 MMMMM
33 40 A L I <5S+ 0 0 9 6 0 LLLLL
34 41 A T I <5S+ 0 0 99 6 39 TTTTC
35 42 A K I <5S+ 0 0 130 6 0 KKKKK
36 43 A L I < S+ 0 0 162 6 0 RRRRR
44 51 A E H > S+ 0 0 97 6 0 EEEEE
45 52 A T H > S+ 0 0 0 6 0 TTTTT
46 53 A E H > S+ 0 0 31 6 0 EEEEE
47 54 A A H X S+ 0 0 45 6 0 AAAAA
48 55 A I H X S+ 0 0 1 6 0 IIIII
49 56 A M H < S+ 0 0 31 6 0 MMMMM
50 57 A K H < S+ 0 0 142 6 0 KKKKK
51 58 A E H < S+ 0 0 95 6 0 EEEEE
52 59 A A S < S+ 0 0 4 6 0 AAAAA
53 60 A R S S- 0 0 59 6 0 RRRRR
54 61 A G - 0 0 41 6 0 GGGGG
55 62 A P S S+ 0 0 136 6 0 PPPPP
56 63 A K S S- 0 0 159 6 0 KKKKK
57 64 A G + 0 0 26 6 0 GGGGG
58 65 A D S S- 0 0 74 6 0 DDDDD
59 66 A K S S+ 0 0 170 6 0 KKKKK
60 67 A K + 0 0 78 6 0 KKKKK
61 68 A N - 0 0 51 6 0 NNNNN
62 69 A I B -A 24 0A 12 6 33 ILLLL
63 70 A G > - 0 0 10 6 0 GGGGG
64 71 A P T 4 S+ 0 0 59 6 0 PPPPP
65 72 A E T > S+ 0 0 121 6 0 EEEEE
66 73 A E H > S+ 0 0 60 6 0 EEEEE
67 74 A W H X S+ 0 0 1 6 0 WWWWW
68 75 A L H > S+ 0 0 16 6 0 LLLLL
69 76 A T H X S+ 0 0 59 6 70 TTVVV
70 77 A L H X S+ 0 0 2 6 0 LLLLL
71 78 A C H X S+ 0 0 1 6 0 CCCCC
72 79 A S H X>S+ 0 0 44 6 0 SSSSS
73 80 A K H <5S+ 0 0 106 6 0 KKKKK
74 81 A W H <5S+ 0 0 77 6 0 WWWWW
75 82 A V H <5S+ 0 0 51 6 0 VVVVV
76 83 A R T <5 0 0 210 6 0 RRRRR
77 84 A Q < 0 0 165 6 0 QQQQQ
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 8 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
2 9 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 10 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
4 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
5 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
6 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
7 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
8 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
9 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
10 17 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
11 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
12 19 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
13 20 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
14 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
15 22 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
16 23 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
18 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
19 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
20 27 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
21 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
22 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
23 30 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
24 31 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
25 32 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
26 33 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
27 34 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
28 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
29 36 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
30 37 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 38 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
32 39 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
33 40 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
34 41 A 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 0 0 0 0 6 0 0 0.451 15 0.61
35 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
36 43 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
37 44 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
38 45 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
39 46 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
40 47 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
41 48 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
42 49 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
43 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
44 51 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
45 52 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
46 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
47 54 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
48 55 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
49 56 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
50 57 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
51 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
52 59 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
53 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
54 61 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
55 62 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
56 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
57 64 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
58 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
59 66 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
60 67 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
61 68 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
62 69 A 0 67 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.66
63 70 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
64 71 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
65 72 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
66 73 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
67 74 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
68 75 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
69 76 A 50 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 6 0 0 0.693 23 0.29
70 77 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
71 78 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
72 79 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
73 80 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
74 81 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
75 82 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
76 83 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
77 84 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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