Complet list of 1j7q hssp file
Complete list of 1j7q.hssp file
HSSP HOMOLOGY DERIVED SECONDARY STRUCTURE OF PROTEINS , VERSION 2.0 2011
PDBID 1J7Q
THRESHOLD according to: t(L)=(290.15 * L ** -0.562) + 5
REFERENCE Sander C., Schneider R. : Database of homology-derived protein structures. Proteins, 9:56-68 (1991).
CONTACT Maintained at http://www.cmbi.ru.nl/ by Maarten L. Hekkelman
DATE file generated on 2014-04-30
HEADER METAL BINDING PROTEIN 18-MAY-01 1J7Q
COMPND MOL_ID: 1; MOLECULE: CALCIUM VECTOR PROTEIN; CHAIN: A; FRAGMENT: N-TER
SOURCE MOL_ID: 1; ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; ORGANISM_CO
AUTHOR I.THERET,S.BALADI,J.A.COX,J.GALLAY,H.SAKAMOTO,C.T.CRAESCU
DBREF 1J7Q A 1 86 UNP P04573 CAVP_BRALA 1 86
SEQLENGTH 86
NCHAIN 1 chain(s) in 1J7Q data set
NALIGN 5
NOTATION : ID: EMBL/SWISSPROT identifier of the aligned (homologous) protein
NOTATION : STRID: if the 3-D structure of the aligned protein is known, then STRID is the Protein Data Bank identifier as taken
NOTATION : from the database reference or DR-line of the EMBL/SWISSPROT entry
NOTATION : %IDE: percentage of residue identity of the alignment
NOTATION : %SIM (%WSIM): (weighted) similarity of the alignment
NOTATION : IFIR/ILAS: first and last residue of the alignment in the test sequence
NOTATION : JFIR/JLAS: first and last residue of the alignment in the alignend protein
NOTATION : LALI: length of the alignment excluding insertions and deletions
NOTATION : NGAP: number of insertions and deletions in the alignment
NOTATION : LGAP: total length of all insertions and deletions
NOTATION : LSEQ2: length of the entire sequence of the aligned protein
NOTATION : ACCNUM: SwissProt accession number
NOTATION : PROTEIN: one-line description of aligned protein
NOTATION : SeqNo,PDBNo,AA,STRUCTURE,BP1,BP2,ACC: sequential and PDB residue numbers, amino acid (lower case = Cys), secondary
NOTATION : structure, bridge partners, solvent exposure as in DSSP (Kabsch and Sander, Biopolymers 22, 2577-2637(1983)
NOTATION : VAR: sequence variability on a scale of 0-100 as derived from the NALIGN alignments
NOTATION : pair of lower case characters (AvaK) in the alignend sequence bracket a point of insertion in this sequence
NOTATION : dots (....) in the alignend sequence indicate points of deletion in this sequence
NOTATION : SEQUENCE PROFILE: relative frequency of an amino acid type at each position. Asx and Glx are in their
NOTATION : acid/amide form in proportion to their database frequencies
NOTATION : NOCC: number of aligned sequences spanning this position (including the test sequence)
NOTATION : NDEL: number of sequences with a deletion in the test protein at this position
NOTATION : NINS: number of sequences with an insertion in the test protein at this position
NOTATION : ENTROPY: entropy measure of sequence variability at this position
NOTATION : RELENT: relative entropy, i.e. entropy normalized to the range 0-100
NOTATION : WEIGHT: conservation weight
## PROTEINS : identifier and alignment statistics
NR. ID STRID %IDE %WSIM IFIR ILAS JFIR JLAS LALI NGAP LGAP LSEQ2 ACCNUM PROTEIN
1 : CAVP_BRALA 1J7R 1.00 1.00 1 86 2 87 86 0 0 162 P04573 Calcium vector protein OS=Branchiostoma lanceolatum PE=1 SV=3
2 : G0Z388_BRABE 0.99 1.00 1 86 2 87 86 0 0 162 G0Z388 Calcium vector protein OS=Branchiostoma belcheri PE=2 SV=1
3 : C3YYW0_BRAFL 0.98 0.99 1 86 21 106 86 0 0 181 C3YYW0 Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_123412 PE=4 SV=1
4 : CAVP_BRAFL 0.98 0.99 1 86 2 87 86 0 0 162 O01305 Calcium vector protein OS=Branchiostoma floridae PE=2 SV=3
5 : Q9NDR7_BRABE 0.97 0.98 1 86 7 92 86 0 0 167 Q9NDR7 Calcium vector protein OS=Branchiostoma belcheri GN=BbCAVP PE=2 SV=1
## ALIGNMENTS 1 - 5
SeqNo PDBNo AA STRUCTURE BP1 BP2 ACC NOCC VAR ....:....1....:....2....:....3....:....4....:....5....:....6....:....7
1 1 A A 0 0 137 6 0 AAAAA
2 2 A A + 0 0 81 6 0 AAAAA
3 3 A P - 0 0 102 6 0 PPPPP
4 4 A K - 0 0 151 6 0 KKKKK
5 5 A A - 0 0 77 6 0 AAAAA
6 6 A R - 0 0 109 6 0 RRRRR
7 7 A A - 0 0 73 6 0 AAAAA
8 8 A L + 0 0 122 6 0 LLLLL
9 9 A G S S- 0 0 19 6 0 GGGGG
10 10 A P S > S+ 0 0 124 6 0 PPPPP
11 11 A E T 3> S+ 0 0 105 6 0 EEEEE
12 12 A E H 3> S+ 0 0 3 6 0 EEEEE
13 13 A K H <> S+ 0 0 89 6 0 KKKKK
14 14 A D H > S+ 0 0 67 6 0 DDDDD
15 15 A E H X S+ 0 0 19 6 0 EEEEE
16 16 A C H X S+ 0 0 6 6 0 CCCCC
17 17 A M H X S+ 0 0 61 6 0 MMMMM
18 18 A K H X S+ 0 0 123 6 0 KKKKK
19 19 A I H X>S+ 0 0 3 6 0 IIIII
20 20 A F H X5S+ 0 0 16 6 0 FFFFF
21 21 A D H <5S+ 0 0 66 6 0 DDDDD
22 22 A I H <5S+ 0 0 111 6 0 IIIII
23 23 A F H <5S+ 0 0 28 6 0 FFFFF
24 24 A D S - 0 0 25 6 0 PPPPP
33 33 A V H > S+ 0 0 39 6 0 VVVVV
34 34 A S H > S+ 0 0 69 6 0 SSSSS
35 35 A D H > S+ 0 0 41 6 0 DDDDD
36 36 A T H X S+ 0 0 0 6 0 TTTTT
37 37 A M H X S+ 0 0 81 6 0 MMMMM
38 38 A D H X>S+ 0 0 77 6 0 DDDDD
39 39 A M I X>S+ 0 0 0 6 0 MMMMM
40 40 A L I <5S+ 0 0 19 6 0 LLLLL
41 41 A T I <5S+ 0 0 107 6 39 TTTTC
42 42 A K I <5S+ 0 0 94 6 0 KKKKK
43 43 A L I < S- 0 0 116 6 0 TTTTT
49 49 A K H > S- 0 0 166 6 0 KKKKK
50 50 A R H > S+ 0 0 160 6 0 RRRRR
51 51 A E H > S+ 0 0 85 6 0 EEEEE
52 52 A T H X S+ 0 0 2 6 0 TTTTT
53 53 A E H X S+ 0 0 63 6 0 EEEEE
54 54 A A H X S+ 0 0 32 6 0 AAAAA
55 55 A I H X S+ 0 0 5 6 0 IIIII
56 56 A M H X S+ 0 0 38 6 0 MMMMM
57 57 A K H X S+ 0 0 116 6 0 KKKKK
58 58 A E H < S+ 0 0 84 6 0 EEEEE
59 59 A A H < S+ 0 0 0 6 0 AAAAA
60 60 A R H < S- 0 0 67 6 0 RRRRR
61 61 A G < - 0 0 29 6 0 GGGGG
62 62 A P S S+ 0 0 147 6 0 PPPPP
63 63 A K S S- 0 0 157 6 0 KKKKK
64 64 A G + 0 0 23 6 0 GGGGG
65 65 A D S S- 0 0 112 6 0 DDDDD
66 66 A K S S+ 0 0 142 6 0 KKKKK
67 67 A K + 0 0 69 6 0 KKKKK
68 68 A N - 0 0 33 6 0 NNNNN
69 69 A I B +A 31 0A 0 6 33 ILLLL
70 70 A G > - 0 0 6 6 0 GGGGG
71 71 A P T 4 S+ 0 0 92 6 0 PPPPP
72 72 A E T >> S+ 0 0 128 6 0 EEEEE
73 73 A E H 3> S+ 0 0 61 6 0 EEEEE
74 74 A W H 3X S+ 0 0 6 6 0 WWWWW
75 75 A L H <> S+ 0 0 29 6 0 LLLLL
76 76 A T H X S+ 0 0 38 6 70 TTVVV
77 77 A L H X S+ 0 0 14 6 0 LLLLL
78 78 A C H X S+ 0 0 6 6 0 CCCCC
79 79 A S H X>S+ 0 0 23 6 0 SSSSS
80 80 A K H <5S+ 0 0 75 6 0 KKKKK
81 81 A W H <5S+ 0 0 82 6 0 WWWWW
82 82 A V H <5S+ 0 0 58 6 0 VVVVV
83 83 A R T <5S- 0 0 163 6 0 RRRRR
84 84 A Q < - 0 0 123 6 0 QQQQQ
85 85 A D 0 0 59 6 0 DDDDD
86 86 A D 0 0 196 6 0 DDDDD
## SEQUENCE PROFILE AND ENTROPY
SeqNo PDBNo V L I M F W Y G A P S T C H R K Q E N D NOCC NDEL NINS ENTROPY RELENT WEIGHT
1 1 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
2 2 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
3 3 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
4 4 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
5 5 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
6 6 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
7 7 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
8 8 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
9 9 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
10 10 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
11 11 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
12 12 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
13 13 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
14 14 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
15 15 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
16 16 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
17 17 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
18 18 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
19 19 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
20 20 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
21 21 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
22 22 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
23 23 A 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
24 24 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
25 25 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
26 26 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
27 27 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
28 28 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
29 29 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
30 30 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
31 31 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
32 32 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
33 33 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
34 34 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
35 35 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
36 36 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
37 37 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
38 38 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
39 39 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
40 40 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
41 41 A 0 0 0 0 0 0 0 0 0 0 0 83 17 0 0 0 0 0 0 0 6 0 0 0.451 15 0.61
42 42 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
43 43 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
44 44 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
45 45 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
46 46 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
47 47 A 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
48 48 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
49 49 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
50 50 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
51 51 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
52 52 A 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
53 53 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
54 54 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
55 55 A 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
56 56 A 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
57 57 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
58 58 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
59 59 A 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
60 60 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
61 61 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
62 62 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
63 63 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
64 64 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
65 65 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
66 66 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
67 67 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
68 68 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 6 0 0 0.000 0 1.00
69 69 A 0 67 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.637 21 0.66
70 70 A 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
71 71 A 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
72 72 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
73 73 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 6 0 0 0.000 0 1.00
74 74 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
75 75 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
76 76 A 50 0 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 6 0 0 0.693 23 0.29
77 77 A 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
78 78 A 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
79 79 A 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
80 80 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 6 0 0 0.000 0 1.00
81 81 A 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
82 82 A 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0.000 0 1.00
83 83 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 6 0 0 0.000 0 1.00
84 84 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 6 0 0 0.000 0 1.00
85 85 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
86 86 A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 100 6 0 0 0.000 0 1.00
## INSERTION LIST
AliNo IPOS JPOS Len Sequence
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